Array 1 300249-301314 **** Predicted by CRISPRDetect 2.4 *** >NZ_AESL01000016.1 Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1 isolate FDA_2010_147_Black Pepper-3 SEEM201_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 300249 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 300310 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 300371 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 300432 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 300493 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 300554 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 300615 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 300676 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 300737 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 300799 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 300860 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 300921 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 300982 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 301043 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 301104 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 301165 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 301226 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 301287 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 317450-318943 **** Predicted by CRISPRDetect 2.4 *** >NZ_AESL01000016.1 Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1 isolate FDA_2010_147_Black Pepper-3 SEEM201_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 317450 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 317511 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 317572 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 317633 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 317694 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 317755 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 317816 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 317877 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 317938 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 317999 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 318060 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 318121 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 318182 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 318243 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 318304 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 318365 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 318426 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 318487 29 100.0 32 ............................. TTATCCACCAGCAATCAGGGGCCGGATATACA 318548 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 318609 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 318670 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 318731 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 318792 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 318853 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 318914 29 93.1 0 A...........T................ | A [318940] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //