Array 1 2759820-2760028 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRXB010000001.1 Klebsiella oxytoca strain KLO00017 KLO00017_c0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2759820 28 100.0 32 ............................ ATAGTGAGCTCAGGCGCTTTGATGCGGCCCTC 2759880 28 100.0 33 ............................ TTGCCGTCTGTTGCCAGAGCGAAACCACGGCTT 2759941 28 100.0 32 ............................ GGATGACCGATCGTATCGGCATTTTTGAATTG 2760001 28 82.1 0 ............T.C.....T.C..T.. | ========== ====== ====== ====== ============================ ================================= ================== 4 28 95.5 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCATCAGCAGCATGCTGGTGGCGAAAGGTCTGCCAGGCTTTATCGCTTATGGGGTTTTAGCTGGAGAAGTGGTTGCGCCATGTCTGCTGATTGTGGGGATCCTGACGCGCCCTGCGGCGCTGGTGCTGGCATTCACGATGGTTGTGGCCTGGCTGATGGTCGGGACGGGTAAAACCTTCGCGCTGGATGCGGTAGGTGCGTGGGCGATTGAGAGTCTGGTCTATTTCTTTGTTGGCGCGCTGGCGATTGCCTTCCTCGGGGCAGGCCGATATTCCATTGGCGGAAACTCGGCCTGGCGGTAAGTGCACCAGTGTTTTCTGCCTCACCCTGGCCACATCTTGTTTGCCGGGGTGTCGCCGCTCGTTTTTCAGACCCTTTTCTGGGGCGTTATTTTAAGATATTGATTTTTTAATATTTTTATTCTTGCCTAAAAAAGGGTAAAAGGGCCTTTTATTGATTATTGCATGATAAAACAATAAGGCAGGTGCGCCGGGCTAGT # Right flank : AGAGCCATGCTACCCGACGATTACCGCGTAGCATGGCCAGCAACAACATTAAGCCAGTACCAAATCTCCCTGCGGCTGGCAGGAGCAGGCCAGCACGTAGCCTTCAGCGATTTCCGCATCGGTTAACGTCATGGTGCTGCTGACGGTATATTCACCGGAAACCACTTTCGTTTTGCAGCAGCCGCAAACGCCCGCGCGGCAGGCGACGGTAACCGGCACCTTATTGCTTTCCAGCGCTTCGAGCAGCGTGGTGCCGACCGGGGCATAAAACGTTTTCGCCGGCTGCAGTTTGGTGAACTTCAGACCGCTGGTGGCCGCGACGGCGACTGGCGTAAAGAACTGCTCTTTAAAGAAGCGCGTAGCGCCCAGCGCTTTCACTTCCTGCTCGACGAGATCCATATACGGCGCCGGACCGCAGGTCATCACGGTGCGCGATGCCAGATCCGGCACGCTTTGCAGTAGTTCAGTCGTTAAACGTCCTGCCACGAAACCGTGGGTAG # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2773287-2773854 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRXB010000001.1 Klebsiella oxytoca strain KLO00017 KLO00017_c0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2773287 28 100.0 32 ............................ ATCCTGAACCCCTTCAATCTGGTTATCGTCAA 2773347 28 100.0 32 ............................ TACTCGACCAGCTGGAAACGGTGATGATTCCG 2773407 28 100.0 32 ............................ TTCCAAAACTGCTATTTCGGCATTGGTGTAAT 2773467 28 100.0 32 ............................ TCAGAAAATGGTCCATGGCCCTTACTAAGTCA 2773527 28 100.0 32 ............................ TCGGGGCGCTTGCGCGGTAAATAGATCTCCGG 2773587 28 100.0 32 ............................ CTCTTCGCGTCTGCGATACCGGAAACGGAGAC 2773647 28 100.0 32 ............................ GTAAAGACGCTACCAGGCACATCGCTGAATAA 2773707 28 96.4 32 ............G............... TCGACATCGCCGAGAGCGGCGTAGCCGTATAG 2773767 28 92.9 32 ............G.......A....... TGCCCGCCGAGCCGGAAAGCGACAGCGGTAAA 2773827 28 92.9 0 ....T.C..................... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTTATCCATCAGGTGGTGGATAAGTTTATCGTTGAGCTGCAGGTCCAGCTGGATCAGAAAGGCGTCTCTTTGGAAGTAAGCCAGGAAGCCCGCGATTGGCTGGCCGAGAAAGGCTACGACCGGGCCATGGGCGCGCGTCCGATGGCGAGGGTGATTCAGGACAACCTGAAAAAACCGCTGGCCAACGAGCTGCTGTTTGGCTCACTGGTTGACGGCGGTCAGGTGATCGTTGAGCTGGATAAAGAGAAAAATGCGCTGACCTACGCCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCGGCACATTAAGTCGCTTGCGTGAAACGTCAAACCGGCCTCAGGGCCGGTTTTTTTATGCCGATGTCCTGAACCCTTTTTTATTCCGCTTTTGTAAGCTATTGATTTGATTAAAGTGAAAATCTGGCGTGAAATTATGGTAGCAGAGAGGGGCTGTTGATTAATTTCAATGATAACAATATGGTAGGGTGTCGTTCGTTCA # Right flank : AAGAGCTTGCCCATACTGCGGTGCAGGCTAAAACGATTCTAAAGAATTTGCCAAAATAATAGGCTATTTTGCAATTTGCGATGAATGTCAACGTATTACCTCTAATATACTGTTTTTATAAACAGCTATCGACACTGAGCCACAGGATGTGACTATGCCCGCGAACTATATTGCCCCGTCGGATTTAAAAACGATTCTCCATTCGAAGCGCGCCAATATTTATTATCTGGAAAAGTGTCGGGTTCAGGTCAACGGCGGCCGCGTGGAATATGTTACGAGCGAGGGAAAAGAGTCATTCTACTGGAATATCCCAATAGCAAATACAACGGCTATTATGTTGGGAATGGGAACCTCCGTTAGCCAGGCTGCAATGCGTGAGTTTGCCCGAGCGGGCGTAATGGTCGGTTTTTGCGGTACGGATGGCACGCCTCTTTATGCTGCTAATGAAGTCGATATTGACGTTTCCTGGCTGTCCCCGCAAAGCGAATATCGACCAACTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2782284-2783872 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRXB010000001.1 Klebsiella oxytoca strain KLO00017 KLO00017_c0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2782284 28 100.0 32 ............................ TTCACGGTAACCAGCGCCAGCTTATCGCCGGT 2782344 28 100.0 32 ............................ AGTTACTGGGGTGCGGCGCTGACGGGTATGAC 2782404 28 100.0 32 ............................ GCTGTAAGCTCTCCCGGCGTGAGCTCTTTAAT 2782464 28 100.0 32 ............................ ATAGATGCTGGGTTTTTCTTTTTTAAAGCGCG 2782524 28 100.0 34 ............................ ATCTCATTTGCCGCAATGGACGACATCACATTTT 2782586 28 100.0 32 ............................ AGCAAGCCCAAGAAGAACGACCACCCCGCGAT 2782646 28 100.0 32 ............................ TTGCCAAAAAACGCCAAGTCGCTAGCCGGCAA 2782706 28 100.0 32 ............................ AGGTGGTCAGCAACCTGCCGGAGCGAACGCGC 2782766 28 100.0 32 ............................ CCAAACTTTCGACGCTGGCCGGTGGAAGTCAG 2782826 28 100.0 32 ............................ AGACCGCCGAGTAAGGCACGCCATCCGCTGAT 2782886 28 100.0 32 ............................ CATATCGACAATGGGGAAGTTGAGAATTTCTG 2782946 28 100.0 32 ............................ GGCTGCTGCGCGTGGCGATAGAGCGGGATACC 2783006 28 100.0 32 ............................ ATTCAGAAATATCATCTTCAGTGACAGAAGCA 2783066 28 100.0 32 ............................ ACAATTACCTCGGCTTACCGCTAAGATAGTTC 2783126 28 100.0 32 ............................ CTGAAGGAGGGAAGAGCAAAGCGCCAAAAGAA 2783186 28 100.0 32 ............................ GAAAGCACGTCGGCGGATTTTCAGTTCAGCAA 2783246 28 100.0 32 ............................ TGCGATACCTTCAGCGGCCAACATCATCGACT 2783306 28 100.0 32 ............................ GTAATCACTGGCGCTGCCTCGACACATGAGAA 2783366 28 100.0 32 ............................ TGAAGAATGTCAGTTCCTGGACGGATTCATCG 2783426 28 100.0 32 ............................ AGCAGCGCAGGGCCAACGTCCTCAGCGAGAAA 2783486 28 100.0 32 ............................ AGACTGGCCGTGGTATCACTCAGGGCGTTATT 2783546 28 100.0 32 ............................ TAAGTCCATGCTTAGCCCTCAGCTCTGCAATT 2783606 28 100.0 32 ............................ TAAATCCCCCGCAGAACGCAAAGCCGCGCAGG 2783666 28 100.0 31 ............................ TCATAAAAAAGCCCGCGATGCGAGCCTGTTA 2783725 28 100.0 32 ............................ GATCGCATCGTAGCCGGGATTAAGGCTGATGG 2783785 28 100.0 32 ............................ GTATTAAGGAGCAGGAATGAAAACGCCAGATA 2783845 28 92.9 0 .........................TG. | ========== ====== ====== ====== ============================ ================================== ================== 27 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACAAGGATGGCGTTGCGTCAGTCGGGTACAGGTAAAAAGCAGCCCCGAGCGGCTGATGCGCCGCTCGGTGAGAAAAGGCTGGCTGACGCAGGATGAAGCAAATGAGCGATTGCTTAGCATGCGGGGAGAGTCGACAGCGCTCCCCTGGTTGAATATGAAAAGCCTCTCAAATGGGCAGAATTTTCCGCTATTTATTTGTCACGGTGAGCTGCTGGCGCAGCGCGTCGCGGGAACATTCAATAGCTATGGGCTGAGCCATATCGCGACTATCCCCTGGTTTTAGCATGTTGGTGAGAGTTTTTTGTCGAGTGCTAAAACAAACTATAACCGGCGCGGTTTTTCGCGCCGATTTTTCAAGCGCTAATTAAAACCCTTTTTTATGATGAATCTCTATCTTATTGATTTTATATAGTGATTTTATAAAGGTCGGAAAAAGGGTTATGAAGAGGGGAAGGCGTTTTTTGGCTTTTTTATCAGATGGTTGTAGTGGTTAGGCAGCA # Right flank : ATCGTGGCGGTTACGGGCGCAGAGACAGGGCCGTCAAAGCCGAAGAGGGAAACGGCGTGAGAATAAAAGAAATGAAAAGACCGGGAATTATCCCGGCCTTCAGCATCTGGCGCGTTAAACGCGAAAACGATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATGTAGTTTTTACGCATTTTACCGGAAATATGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGGAACATAGTGTTAGGCAGCGTATCAAGTACGGTGCCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCTGGGGTATCACTACCGTAGTTTTGAACCGGCAAGATAATGCCGAAGTTCAGCAAGTATGTAAAGTTTTACGTCAAATCGCCGAAGTAGTTTTGGCGCATTGCCCGTAATTCACGCGGATAAACCGGGCGACAGGCGCAAACG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //