Array 1 80157-75568 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADVOO010000002.1 Acinetobacter courvalinii strain ACIN00158 ACIN00158_c0002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 80156 28 100.0 32 ............................ TGAAACTGATGGTGAAGGTCAAAAACATCCGA 80096 28 100.0 32 ............................ AATCCTTGACCGTTTGCCAAAATGTCTTTTCG 80036 28 100.0 32 ............................ ACGATTGTTGATGTATGATGAGCATGCAGTAA 79976 28 100.0 32 ............................ TGTCAATTTGGATATGGGTGTAGGTGTTATCA 79916 28 100.0 32 ............................ TTTAGATTAGTCACTGGTAACATTGGTGCTGG 79856 28 100.0 32 ............................ TAAATGTCTATATTGAGAATTATCTTTAGCAT 79796 28 100.0 32 ............................ TAAATGTCTATATTGAGAATTATCTTTAGCAT 79736 28 100.0 32 ............................ AAGTAATAAAAGTATCCCCATCAGAAATAGAA 79676 28 100.0 32 ............................ AGAAAAAATAAATGTCATATTTTGCCAGTCGC 79616 28 100.0 32 ............................ AATTCGCGGACTGCAAGTAGAACACTTGATTC 79556 28 100.0 32 ............................ ACTAAGAGATAGCGAGATCGTACATATTCTTA 79496 28 100.0 32 ............................ AACAATAGCCACACAGAAAGCCAATACCATAA 79436 28 100.0 32 ............................ TGACAAACTCGAGTCGGAACAGATGTACTACC 79376 28 100.0 32 ............................ CAATGAGCCTTTTGTCTTGACTCATTAAACAT 79316 28 100.0 32 ............................ AGAAGGGCAGCCGTAAAACAGATGGCAAGGCC 79256 28 100.0 32 ............................ ACCGCCATCAGTATTCGGATCGTTTGGATTCG 79196 28 100.0 32 ............................ TGTCCAGCTAAAGGTTCTCTAAAAGTTTTTTA 79136 28 100.0 32 ............................ TCATGGGGATTTATGGTGTGGATCATGTTCTA 79076 28 100.0 32 ............................ GCACAGAAACAAAGTAGTTTTCCGTGCCCTGC 79016 28 100.0 32 ............................ GTCATTGGCCAACACTCGAAAGCATTCTGCAA 78956 28 100.0 32 ............................ AATCCCAAGTATCTTGCAAACCGATCAATGCT 78896 28 100.0 32 ............................ TTTGGTTCCGCCAACAAACTGTGCAAATGCAA 78836 28 100.0 32 ............................ CATTCGCAATGTACTAAGCTAGCCACCATTAG 78776 28 100.0 32 ............................ CCAGCTCAACAGTGTTAAAACGGGACAGACTT 78716 28 100.0 32 ............................ TTAACAATCGGATCAATACCACGAGCTTCATC 78656 28 100.0 32 ............................ ATGTAGCAGGGATATTAAAGTCTTTACATTGA 78596 28 100.0 32 ............................ AACAATAGAAAGTCCATTGCACACCTGAGCGA 78536 28 100.0 32 ............................ ATCAAAACCGTCTACACCACCTAATACTGATG 78476 28 100.0 32 ............................ TTACGGCAGTCTGAATCACTCACATCATGCAG 78416 28 100.0 32 ............................ TAAATGGTGTTTGTGGGCTGCCGATAATTGTG 78356 28 100.0 32 ............................ AACACTTTATTCAATGTTAGCCATTTCTGAAA 78296 28 100.0 32 ............................ AAAAGCGAAAGTTAGTAATTGCAGCAGGACGA 78236 28 100.0 32 ............................ ATTAAGGCTTTGATTGATTTTTGGTGGTCGAT 78176 28 100.0 32 ............................ CTTCACTTACTCAAGTTCGTCAAGCACTAAAA 78116 28 100.0 32 ............................ GTGTAGAGCGTGAAAATCTGTACAAAGCTTTG 78056 28 100.0 32 ............................ AAACTGCGTTAATTTTTCGTCCGGGATTTCAT 77996 28 100.0 32 ............................ GAATGAGCCGCATTCAATCATTGTTGGTGATA 77936 28 100.0 32 ............................ GTACAGTCGGGACCACTTAATTGTTTTATTAA 77876 28 89.3 32 ...CG.......A............... AAATCGGAGCGTAGGGGTGTTTTAGGGTCTAC 77816 28 89.3 32 ...AT.......A............... ATCTGGCGATGCAACTTCAACTCTTTTAAGTG 77756 28 96.4 32 ............A............... ACCACGCAGCCTTCAAGCTTTTCTGCTGCACG 77696 28 92.9 32 ...A........A............... TAAAATGGCAATGAAAGTGCTGATGGATGCTG 77636 28 96.4 32 ...........T................ TAAAACATGTGTGCAATAATACTTGTATACAT 77576 27 89.3 32 .....-......TC.............. CAAAGTAATTCTTGTCCCCGTTGTTGCTTGCC C [77574] 77516 28 92.9 32 ...C........A............... TAAATTGGGACGTATTGACTTAGCATTTGATG 77456 28 100.0 32 ............................ TTGTTCGCGAGCCTGTTGCATCTTAGCCCTGT 77396 28 100.0 32 ............................ TAAACAACAGGAATCTAAAGATAACTTGCTGA 77336 28 100.0 33 ............................ GACTTCCCTACTTGAGTTTTATTCGCCCCATCC 77275 28 100.0 32 ............................ AATATGGATCTACATTGAGAACTTTAGCAATT 77215 28 96.4 32 ............A............... AACTAGAAGCAGTCTATAGTGATGCTCTGGTA 77155 28 96.4 32 ............A............... ACACCAGCTAGCATGTAGTTCCACACCAAATA 77095 28 96.4 32 ............A............... AACCCGTATCGATAACGTTGTCCGTATCTCTC 77035 28 96.4 32 ............A............... TTGGTGAGCCTGATTGAGAAAGTCGGTGAAAA 76975 28 85.7 32 ...CG......TA............... ATTGAACACTTGACCAGCAGTCGGGATTTTGA 76915 28 85.7 32 ...CG......TA............... CATCGTCTGAAGCTTCTTCGATATTTTGCGCC 76855 28 85.7 32 ...CG......TA............... AAAGCTGCGACACTGATGTTAGAGCACATATA 76795 28 85.7 32 ...CG......TA............... CTGCCCAGAGGCTGAAACAGCAAACATTTCTG 76735 28 85.7 32 ...CG......TA............... TCTGTGTCCAGCTGCTCAAGACGTTCTTTAAC 76675 28 85.7 32 ...CG......TA............... ATACAAGTAAGTGCTTCTTTGGCGCCTTTGTA 76615 28 85.7 32 ...CG......TA............... AGCGTCCGTCCATTGCCAGACTCGACAACCCC 76555 28 85.7 32 ...CG......TA............... TCAATCTGCAAGATACGCCAGAACTGCGCAAG 76495 28 85.7 32 ...CG......TA............... AAAGCCTATTAATTGGCTTAAGCATCCAGCTG 76435 28 85.7 32 ...CG......TA............... TAGTTATGCTGCAAAACAATTTATGAATGCAA 76375 28 89.3 32 ...CG......T................ TTCAGCGTGATGATCTTGACACGTTACGTGCC 76315 28 89.3 32 ...CG......T................ TTTTTGCTTTTGAACACAACGTACTCTTTACC 76255 28 89.3 32 ...CT.......A............... ATAAACTCAGACATATCCGAAATAGCCGCATC 76195 28 89.3 32 ...CG......T................ AATTCCAAACGGTATTAAAACACCTGGCGTTT 76135 28 92.9 32 ...CG....................... CAGCCGAACGGGAAATCGAAAAGGCGCGTAAC 76075 28 100.0 32 ............................ CACCTGTAGGGAGTACGCCCAGGACGTTAGCC 76015 28 96.4 32 ...........T................ ATTCCATACAAATCACACACAACATTAAATTG 75955 28 92.9 32 ...CG....................... TTCATACACGGCGTATGAAATCTTAGCTGCCT 75895 28 100.0 32 ............................ CTCAGCGCTGCAACTACTTGCTTGATTTCTTC 75835 28 89.3 32 ...CG......T................ AACGTGTCGCACAAAAACTCAGTGAGTTTAAT 75775 28 85.7 32 ...CG......TA............... AGGAGAGCAAGAGATTTATAGTATTGATGAAA 75715 28 89.3 32 ...CG......T................ GTTAAGTTAGGACCTATCCTTTTATGGTCTCT 75655 28 89.3 32 ...C........AC.............. ATGAATAACCGCTTATGTGGCGGTGTATTAAC 75595 28 85.7 0 ...CG.......A...........A... | ========== ====== ====== ====== ============================ ================================= ================== 77 28 95.7 32 GTTGCTCATCGCGTAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAGCGTTATATAAACAACTTGCTAAAGGTTTTGGCCTTGAGTTTACGCGTGATGAAGGCAAAAACTCTCACGATACTATTGTTGATATCGCCAACAGTTATCTCGATCATGGTAACTATATTGCCTATGGCTATGCAGCAGTGGCTTTAAATGGCATGGGAATTAGCTTTGCCCTCCCTATTTTGCATGGTAAAACACGTCGTGGAGGTCTAGTCTTTGATCTCGCCGATCTGGTTAAAGATGCTTTTGTGATGCCAATCGCTTTTACATGTGCCGCAAAAGGATTAAATCAAAAAGAATTCCGGATGCAACTTATTGAAACCTGTCAAGATCAAGATATTTTGGATTACATGTTTAGCTTCATTACTGACATATGTAGCAAAATCAAATAAAATCATATAATTAAGACTTATACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTATTAACTTAACTCTA # Right flank : TCAAGTCTTTAATGCCCGTGCTTCAGCAATATTATGCTGTTCCACCAAAGTACGAATGGTATATTCATGGCTGCTTTTCTGATCACAGGCAAATTCACATTTCTGATCCAGCGGCAAAGCACTTCCGCCTAATAATGGACATCCTGCAAACAGCTCCGCCACCCAATCAACAAAAACCCGAACCTTGTGCGATAAATGTCGACTCTGCAAATACACCACCGAAATCGGCATCGGTGCAGGTGTCCATTGGGGTAATACTTCCTTTAAAGTCCCTGCCTCAAAGTGATTGGTCAGCATATAACGTGGTCCTTGAATCAGGCCAAAGCCTTGCAGCGCCAAATCGATATAGGCATCGCCATCATTGACAGACACCTGTCCATTGACACTGACACTCTGGATCAGGTCATCGACCACAAAATCCCAGTCAAAATTACGTCCAGTACGGCTGGAGAAGAAATGAATGGCTTGATGATTTTTTTGCAAATCTTCAAGTGTTTTCG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCTCATCGCGTAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [28-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 85249-86117 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADVOO010000002.1 Acinetobacter courvalinii strain ACIN00158 ACIN00158_c0002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 85249 28 85.7 32 ...GT......CA............... ATTATTATAATCATCTTCAACCCATTTTAAAT 85309 28 85.7 31 ...GT......CA............... GTCGGTATGCAGATGATGGTCGCTGGTATGG 85368 28 89.3 31 .G.........CA............... TTCCCATTTTTCCGATCCATAATTGATAGTT T [85373] 85428 28 89.3 32 .G.........CA............... TTAATCCTCCTCAGCGCTGCAACGACTTGTTT T [85433] 85489 28 85.7 32 ...GT......CA............... AAGCTCTTTAGACCGAGCAAGCATGATTTGGC 85549 28 85.7 31 ...GT......CA............... TGTGTTGGTTTTCCTTCAGTGGTTATATATT 85608 28 89.3 32 .G.........CA............... TTTAACAGAGCGTAGGTTAACTTTGGGTTTTC T [85613] 85669 28 100.0 32 ............................ TCTACCGTACAATGCTACCGTACCTCCAATCA 85729 28 100.0 33 ............................ CAGAAGGGAGAGTGGCCCACGCCCTAGAAGCTC 85790 28 100.0 32 ............................ TCAGGCAAGTCAACTGTTTGCCCTGCCAATGC 85850 28 100.0 32 ............................ TTTGGTCGGTGGATCCTTGCCATATTGGGGCA 85910 28 100.0 32 ............................ TTTGGTCGGTGGATCCTTGCCATATTGGGGCA 85970 28 100.0 32 ............................ AGGGAATCATCCAGCTACATGATCATATTGAC 86030 28 100.0 32 ............................ AGAACAGCTTTAATGTGACTCAACTCTTTTAA 86090 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 94.0 32 GTTTGTCATCGTGTAGATGATTTAGAAA # Left flank : TAAAGATAGAAGCCGTTTTGCCTACATTTGCCTGATAGTCCGTGGGAATCAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATCCCACCTTTCTCAATATTGGAATTAATCGTTTTTAAACTAAAGTGCACTGATTCTTCTAAGGCATTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAACCAATTTTTAACAGATTATTTAAAAAATGAAAGTGTTGAAGCAGAGATCTGCGACAAATTAAGTCGTAGAGACAATTGAAGAGAAATATTATATGCTCTTTAAATTTAGCCTAAGACGATTAGGTTATATTTTTTTAAAATTAGAAAAATTAATATAATTCAATATATTATATTGTTATTCTTTTTTTTTAAGGTTTTTGTTTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTGACTGAGCTCTA # Right flank : AACTTCATTCAATGTTTAAGGCGACATTTTCTGTCGTTAAAAACTGGTATTAAGCAGATTAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTCACTACATTTAAATTTTAACAATAAACTATGCATGTCATTCTGATCTCAGCTTGTGAAAAAAGAGCGTTAAAGAAAACTCGAGCGATCTTGGATAGCTATGCGATTCGTACAGGACATTCATCTTGGCAAGCACCCATGACCATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCCACCCGACAAACAGCGGTAGCCGCTTACACTAATTTTGGTGTACGAAGAATGAAGCTGGCATGGGTTGTAGGAGCAAAACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAAAAACAACAAAAGTTATTGATGCTAGATGAATGGGTCAAAGCAAGTAGCTTGTTGGCAGGTGCAGCAGGGGACATGCATGATATTGGTAAGGCCT # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTCATCGTGTAGATGATTTAGAAA # Alternate repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTTGTCATCGTGTAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //