Array 1 18776-17952 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMWN010000036.1 Phocaeicola dorei strain D55t1_190419_H8 NODE_36_length_55025_cov_25.6304, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 18775 33 100.0 34 ................................. GACTTCCAATCCGCCACTTCCGCTTCTTCGTGTG 18708 33 100.0 33 ................................. TGTCCGAGGAGTCTTTCTCCTGTTCGTTGAATA 18642 33 100.0 32 ................................. CCTTCGCCGATGGCGGTTATGTGCTGACGGGT 18577 33 97.0 32 ................................G TGCGTACTATCAATACATAACTTTAAATCATA 18512 33 100.0 32 ................................. CTATTTATTTGCACTTCCCGACCAAGGGCAGG 18447 33 97.0 33 ................................T AAAGAATGTTGAGTATGGTAAAGAAAAGGCTAT 18381 33 100.0 31 ................................. ATGATGAGGTGAACACGTGTATAGACAACCA 18317 33 100.0 31 ................................. ACGTGATTGGCAAGAAAAGATGTGGGGTATG 18253 33 97.0 34 ................................T CTCGAACTTGCCTTTAATGCGGATGGCTTCCAAG 18186 33 97.0 34 ................................G CCATGATATTTACTATATTTGTTTCTTCCTGGCA 18119 33 97.0 34 ................................C TCCAGTACCATGTTATGTACCCAAGGTATAGGAT 18052 33 100.0 33 ................................. TCAATGGCCCAGTATTCGGCAATATCGAAGATG 17986 33 84.8 0 ..........G.......A.A.......G.G.. | AA [17968] ========== ====== ====== ====== ================================= ================================== ================== 13 33 97.7 33 GTCACACCCTACGTGGGTGTGTGGATTGAAACA # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCATGTTTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTTTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTAGAAGTAATAGGTGTTGAAACGGCTTATAAAGTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAGAGTATTTCTTCGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAACTTGCTGATTTATAATATGTTATTAGATATAGA # Right flank : TTGTTCACTCGTCGGTCAAGTTTATGGAAGAACTGTAAGCATTCGGCCTCTTATGTATTTCTCTCCAGGCTTTTGATTTTGTTATGACTGGAAAAAACACGTACAAGCCCGAATGCTTATCTTTTGTCTGTTTTTTTTTGTTGTTTCACCTAGGTGACAATACATTGGCACCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGATTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGTGTTTGCACGATAAGGCCTTGTAAATGAAGTAAATGGATGAACCATCATGTAGGACACATCAAGAAGGAAAATCTATGAGTCTTCAGAAACAATGGTAAAAATCCACATACATACCAGTTAAGGGGAATTACGGATCCTTTTACACCACAAACCGTTGAAAATAAATGGTTTGTGGTGATAGAAACAAAAAAAGAACAGATGTCTTTTTAATACGCTATCTTATCCAATATCCCGTTCAAGTGTGCAATAGCCACTCC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTACGTGGGTGTGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //