Array 1 190300-188990 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQQO01000011.1 Sphingomonas hankookensis strain CN3 contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 190299 29 100.0 32 ............................. GTATATTTAGTCGACGCGAACCCGGCGTTCCA 190238 29 100.0 32 ............................. CGACTGGCCGGCCTGATATACCTGCCCGCCCT 190177 29 100.0 32 ............................. TGTCGTGTCGCGCTGGCAGTTGTCGGGGCAGG 190116 29 96.6 32 A............................ AGTTCCTCATAGGTGAATTTGACCCCGGTATT 190055 29 100.0 32 ............................. CACGATATCAAATCGGCAACGTCGATCGCTTC 189994 29 100.0 32 ............................. GCCGGAGGTCAGGTCGAGCTTTTCGCCGTAGC 189933 29 100.0 32 ............................. CGTGCCTGCGGAAGCCGTGACGATCGCATATC 189872 29 100.0 32 ............................. GCCAGAGAGGACGAACAATGACCTTCCGTTCC 189811 29 100.0 32 ............................. TCAAGCTCCCGATGGATGCGCTCGAGGGGATC 189750 29 100.0 32 ............................. GACGTCCTCGACGAGCAGATGGTCGTCATCTA 189689 29 96.6 32 C............................ AGCATTCCCCTTTACCTCTCAGCTCTTGAACG 189628 29 100.0 32 ............................. GCGCTTCCTTCCGCGCTGCTTCCGCGCAGGGT 189567 29 100.0 32 ............................. TTCGCATACGGACGTGCCGCTTCTGCCGCATC 189506 29 100.0 32 ............................. CCATCGCCAACGGCGACGATCCCGGCGAACCT 189445 29 100.0 32 ............................. TATGTCTCTGTCTCTGTCTCTGTCTCTGGTGA 189384 29 100.0 32 ............................. GCGTTGCGCGGGCGGTGACGCATGAGCCGCTG 189323 29 100.0 32 ............................. GGGCTGGTGGCCTCGGAGGGACTGCAATTAGC 189262 29 100.0 32 ............................. ATTATCCCAAGTCATCCCCGGAAGGAACTGGC 189201 29 100.0 32 ............................. TTGGTCGGATGCGCGACGATCCAGACCGCGAC 189140 29 100.0 32 ............................. CTTCTGCTTGTGCGGCTTCATCTTGCGCATTT 189079 29 100.0 32 ............................. GCCTGGCACGGTGCGTGTGGCGGAGGGGGCGC 189018 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.7 32 GGGTGGATCCCCGCGGGGGCGGGGGAGAC # Left flank : CCCCTGTCGCACACCGCCCGACAACTGCGGCAGTTTGGTCGAGAAATCCTCGATCGTCAGCGCGGATTGCAACCGGATCTGCTGTTCGCTGGTCGACGCGACCGGGCTGCTCGACACCAGTCCCGGCGTGGGGATGCGTGTCCCGGTGACGACGATTTCGCCATCGCCCTGATCGTCGCTGGCGGTCGAGGCGCCGGCAGGGACGGGAGTCGTGGCGGTTGTGCTTTGAGCCATCGCGATCCCGGGTAACTGGGGCAGCGCAATGGCTAGCGCCGCCAGCGCGGTCGAATGCCGGAACGATGGTGCCATGGTCTGCTCCTCTGTCGCACCGCCGGTTTTGTGTTCGGTGCCCTTATTCGCGAATCAGCGACGGAGTTGAAGTGTGTATACCTGCAGCTATCATGTAAAGGGGCGGTATTAATTTGGTATTGTAATAATTGAGCAGTTCTCTGCGGGGGCGGGGAGACTCGGCATTGAGGTGACGGCGCGCGCGCAGGATG # Right flank : ACTTGGCGTTAGGTTGGTGAAATTGTTTACCTTTTCAAAGATCGTTGGTCGAGGCTGATTATCTAGGGGTTGCGGGAGCTTAGCGCCCGGCGGACCAGAAGAATGCCGTCATGGGCCACGACGTCCTTGGGCGGTTCGCCGAGCACGGAAAGGCCCAGACCGCCTGCGGAAGCGGGTTCGGCCCAGCACATTACGATGCTGCCGCGGCGCAGGCGGCCATGCCATTCCTCGACCACCGTCCAGATGCGGCCGCGCACGCCGGCGCTCATGCGCGGCTGGGCATAGACGCCGGGGGCGAGTTCGAGCATCGCCGAGCCGAGGAAGCCGCGATAGCGGTCCTCGACGCCGCGGGTGATGACGACGGTCAGCGGCATCAGGTCGTCGCCCCCGCCGCCTCGCCGGGCATCAGCAGCCCCTTGATCCGGTCGATCATGCCGGGAATGACGCTGCGCTGCCGGAACAGCAGGGCCGCGCGCTTGCGCACCAGCCGTTCGATCGGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGTGGATCCCCGCGGGGGCGGGGGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 1 87707-87452 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQQO01000034.1 Sphingomonas hankookensis strain CN3 contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ==================================== ================== 87706 25 92.0 36 ...........GG............ AGCCGCGATGGATCGAAGCCGCCGGTCATCACATCT 87645 25 100.0 36 ......................... GGGCGCCCGAAGCACTGGTATCGTGCCCTTGCTTGT 87584 25 100.0 29 ......................... GGGTTACAAAGCGCGACGCCTGTGGCTCT 87530 24 80.0 28 .G........-.T.........A.G GCCTGTTGCAGGCCGAACCCAATTCTTC C [87516] 87477 25 80.0 0 ..CA.......A.......AG.... | T [87472] ========== ====== ====== ====== ========================= ==================================== ================== 5 25 90.4 32 GTATCCCCGCGCAGGCGGGGATCCA # Left flank : GGACGCAGGGCGCGCGTGCCACGCTGTCGGACCATGTCGCGGTGCCCGGCGTCTATCCCGCCGGGCGGCTTGACCGCGACAGCGAGGGGCTGTTGCTGCTGACCGACGACGGCCGCCTGCAGGCGCGGATCGCCGATCCCCGGTTCAAGCTGCCCAAGACCTATCTCGTGCAGGTAGAGGGCGCGCCCGACGCCGCCGCGCTCGACCGGCTGCGGCAGGGCGTCGCGCTCAACGACGGCCCGACCCGCCCGGCGGAGGTGATGGCGATCGACCCGCCCGACCTGTGGGAGCGCGTGCCGCCGATACGCTTCCGCAAGAGCGTGCCCGACCATTGGCTGTCGCTCACCATCCGCGAAGGGCGCAACCGGCAGGTGCGGCGGATGACGGCGGCGGTCGGCCTGCCGACGCTCCGGCTGGTGCGCTGGCGGATCGGGCCGTGGAGTGTCGAAGGGCTGGCGCCGGGGGAATGGCGGGAGGTGGTCGCCTGACGCAGCTGATCC # Right flank : TAGACGCTGACGTCCCGGATCACGCAGAACCGTTGCGGCAATGGATTCCCGCCTTCGCGGGAATGACGATGGAAGCAACCCCACCCGTCACCCCGGGCTTGACCCGGGGTCCCGCTTCTTCTGCCGCCGTAGCAAGCAAGCGGGACCCCGGATCAAGTCCGGGGTGACGACCTTTCGAAGGGGGGGCGAAAATCCCTCAAGCGGCGTTCTGGTCGATCCCCAATTCGCCCAATTTCCGATACAGCGTCGACCGCCCGATCCCCAGCCGCCGGGCGACCTCGGTCATCCGCCCGCGATAATGGCCGATGGCGAGGCGGATGACGTCGGCCTCGATCTCCTCCAGCGCGCGCAGGTTTCCGTCGGGGCGGAACAGCGTGACACCGCCCGCAACATCGTGGCGTTGCGCGGGCAGCACCGGCTGCGGCGCGCCGCCTTCCGCGATCTGTGCGATCTCGGGGAAATCGGCCCGGGTCAGCGCGTCCCCGTCGCACAGCACCGCC # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:0, 3:0, 4:0.52, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCCCCGCGCAGGCGGGGATCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 66357-66505 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQQO01000007.1 Sphingomonas hankookensis strain CN3 contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================== ================== 66357 27 96.3 34 ......................G.... GCCCAGCAAGGAGGGCGAGGTCGATGGCGACACC 66418 27 100.0 34 ........................... GCGTCGGCGTCCAATGCCGCTGGAAGTGCCAGCA 66479 27 96.3 0 ........................T.. | ========== ====== ====== ====== =========================== ================================== ================== 3 27 97.5 34 CGTACCCCCGCGCAGGCGGGGGTCCAG # Left flank : CGCGCCTTGTGGTCGGCGTTCGTCGTCGAACTGCCCGGCGGCAATCTGTTCTTCGCGGGCGACACCGGCATGGGCGACGGCAAGTGGGTGCGAGAGGCCGCCGCGCTCGGCCCGATCCGCCTCGCATTGATCCCCATCGGCGCCTTCCGCTTCCAGCCCGGACAGATGGCGAGCGGCGCGCATATCGGCCCGGTCGATGCGCTCGACGTCTTCGGACGGCTGGGCGCATCGCAGGGGCTGGCGATCCATTGGGGCACCTTCCGCCTGTCCTATGAAGGCTGGGCGACGCCGCCCAAATTGCTCACCGAGGCGAAGCGTTGCGCAGGGCAGGGCGACCGCCGCTTCGGCGCGGCCACCATCGGCCGCCCGGTCGACATCGCCCCGACGACCGCGCCTGCCGCAGCGCCGTTCGATCGTGCCGCCGTCCTGCGCTGTCTCGACGGTCCGGCTGGCAATGCGTTGCGATGAATGGTCGTTCCGACCGCCGAGCAGAACCGTAC # Right flank : GCGCCACACAAAGCGAGGGCTGGTGCTGGTCGCTCTGGATCCCCGCCTGCGCGGGGATACGGAATGGAGGGCTGGCCGCCGGTCTTACCTTGCTTCCGGGCTGACGATGCGATGCTTGCGTTGACCAGGCCTGCCGGCCTAATAGTAACGACAGATACGATCCGGCGGAGACCGGACCATTGGAGAGAGACATGCTCGATTTCGCGCTCGGCGAGATGGCCGATGCCATTCGCGAGACCACGCAGCGCTTCGCGACGGACCGCATCGCACCCGTAGCGGCGGCGGTCGATGCGGAGGATCGCTTCCCTATCGAGCTATGGCCCGAAATGGGCGCGCTCGGCCTGCACGGCATCACCGTCAGCGAAGAGGATGGCGGCCTCGGCCTCGGCTATCTCGAACATGTCGTCGCCTGCGAGGAAGTGGCGCGCGCCTCCGCCTCGGTTGGCCTGTCCTATGGCGCCCACTCCAACCTCTGCGTCAACCAGATCGCGCGCTGGGGC # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTACCCCCGCGCAGGCGGGGGTCCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA //