Array 1 67491-67979 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYBT01000001.1 Listeria goaensis strain ILCC793, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 67491 30 100.0 34 .............................. TCATAATAATGAATATTGTTCGCATATTCTTCAT 67555 30 100.0 36 .............................. TGCGAGGAATAGACCTAGAACTAGACCTAGACCTAG 67621 30 100.0 34 .............................. TTGCGTAGCATCATTGGTATTAATCCAAGAACAT 67685 30 100.0 36 .............................. TTGATGAATTTTGTGACATCTATCCTAATGCTTCCA 67751 30 100.0 36 .............................. TTGATTAAAGGTTATTTACGTGGTTCTGAAGGCGAA 67817 30 100.0 35 .............................. GTGGCTGGGCTAAAGATAAATAGATTGCCCATGTG 67882 30 96.7 38 ..C........................... GTTGTTAGACCTGAATAGGCTACATCATCTTGAATGGA 67950 30 80.0 0 ..............CC.A....C....TG. | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 97.1 36 GTTTTAATCTATGTATTGTGAAATGTAAAT # Left flank : TCAAGCGAAGCGGCGCAGATGTTTTCGTGACGGGAGATATTTATTATCATACAGGGCACGACTTACTTGCGATTGATTTACCTACGATTGATGCGGGGCATAATATTGAAAAAGTGATGAAACGTTATTTAAAAACGGAATTTGAAAAAAGGGCGGAAAATTTAAAGTATGAGGCTGATTTTATCATTTCAGAAGTCGATACTGATCCGTTCACGTTCTTATGAAAACGAAATTAATTTTTTTAAGCGGCAACTCAGGCAGTGGGAAAGCAACGCTCTTTCAATGTCATTAGAGTAAATTTTTAATTCAATCTGTCGATGTCTAGTAATGTGAAAATGCTGGGACATCGACAGAAATCCGGAATTCATTGCGGGAGAAGGGAAGATGGCGGAAAGAGAGACAATGACTTTCTTTTTCTACTCCATTTTTCTCCAAAAATCCGGGGGTCGACAGAAAATCACTTTTGAGCTATGATGGGAGTAAGAGTCACGAGGGTACCT # Right flank : TTTAGCCAAATAAAAAGTTAAAGCACAATTAGAGCATATATTAAAACAAAACAAAAAGCATAAATCCAGTAGTGATTCCATTTCAGAAATGGTTTTTACTGGGTTTATGCTTATTTTTTATCGACCGCCGTTTTTTAAATGTTCTAATCGGGCGCGGCGTTTTTCTTCCATGTTTTTCTTTTTGGCACGCGGTAGAATGGCTTCGGCGCTTATTTGGTGGTGGCGTTCCCAAGTTGTGGGGTCATCTGGTTCGTACTGGTCTAAAAAGACGAGCACTTCTCGGATAATATGTGTTGGCGTGCTAGCACCAGCAGTTATCGCCACTTTTTTAGCATCTTTAAGCCAATCTAAATTAATTTCGCTCACATCGGCCACTCGATATGCGGGGACTAAAGCTTTTTCAATCGAAACTTGGGCGAGACGATTCGTGTTATTGCTCCGCGGGTCGCCTACAACAATTGTGACGTCAGCGCCGACAGCTTGTTCTGCAACGGCTTCTT # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCTATGTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 308673-309094 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYBT01000002.1 Listeria goaensis strain ILCC793, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 308673 30 100.0 36 .............................. TAGGGAATATCCATCACTAGAAACTCGATTCGGTAC 308739 30 100.0 37 .............................. GAGGGATTTAGACCAAGCGAACGACGCGCGCGAACAT 308806 30 100.0 35 .............................. TTGATTTGAGTCTTCATCGAGAGTGTATCAATGAC 308871 30 100.0 35 .............................. GCTGTATCTTTGATTTCAAATTGAACTCCAGACAG 308936 30 96.7 35 ................G............. AGCATTGGTGCGAATGTACTTGGTCAGTATCGAAT 309001 30 100.0 34 .............................. CCACGTCAGAACGTATCTGGCCCAATTCGGCAGT 309065 30 86.7 0 .............C...G...G...G.... | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 97.6 36 GTTTTAATCTATGTATTATGAAATGTAAAT # Left flank : TATCAAGGTTTTAAGATGTGGTGGTGATTTTATGTATATTATCTTAATCTATGATATTCCAAATGGCGAGGGCAGTGCGAAAGTTGCGCGTAAGATTTTTAAAACTTGTAAAAAATATTTAACACACATTCAAAAGTCCGTTTTTGAAGGGGAGGTTACACCAGCACTTCTCATGCAACTAAAGCTTGAACTTAATCAACATATTCGAAAAGAGATGGACTCTGTCATTATTTTTAATAGTCGCAATCAAAAGTGGCTAGAAAAAGAGTTTTTAGGTCTTGAAGATAGTAAGACATCTAATTTTTTCTAATCTGTCGATGCTAGATAGCGTAAAAACACCTGGGGGTCGACAAAAACTTGTTATCCGTTCTGGCAGAATGGATAACAAGTTTTTTTTGTTTGTGAAACTAAGGAAAACTTGAAAAATAACTCCCGAAAATCAGAGGTCGACAGAAAAGCCTTTTTGAGGTAAGATGGGAGTAGGGCTCGCGAGGGTACCT # Right flank : TACAGGAGGCGTATTTTTAGGGTGTTCCATACATAAAGTTTTAATCCATGCATAAAAACTACAGTTTCTGCATTTTTGTGGTATTCTAGTCTACATATTATGAAGTATGGCTGCAATTTAGCATTGGGAAACTAGTTTTTTTAACTACAAAACTACACATTCTAAAAAAGCAAAAATCATTAGAAGCGCAGTGCATCTGCGGAAATGATTTTTGCTTTTATGTGTGTTTGTATAGTGATTGCATATGCAATTTGTTTGCGGGGATAAAATGGGTAAAACCCGCTGTTTTTGTAATAATCCGCACTAGCTTTCTTCAAAATGAACAAAAAAGGGGATTATTTTTGCGCGATTGTTCAAAAAATGTCTACAGAAAATGGCGGTGAAGTCTGGTAAGATATTACTTGTGATGAGGAAAACACTGTATGCCTCATCATAAGTATTCCTTTAATTACAAAACGAGCTGTTCAACCTTTTGACCTAGCCATCTTATCTTGGCTAGG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCTATGTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 325640-325085 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYBT01000002.1 Listeria goaensis strain ILCC793, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 325639 30 100.0 36 .............................. TAGTACTTTCTCGTGTTTTTCATCAGCGTAATTATT 325573 30 100.0 36 .............................. AGACGTGCTTCTAAAATTAGAGCAAGGAAAAATTTC 325507 30 100.0 36 .............................. TTGAAATTGAATATACCTTTCATATGACTACCTCCA 325441 30 100.0 36 .............................. ACTGTGAAACATGAGATAAACGGTGAGTTTAGCTTT 325375 30 100.0 36 .............................. GCTATTTTGTCTTTTGCCGAAAACCAAGAACTTTGG 325309 30 100.0 34 .............................. ATTTTCGAAGCTTGGAAGATATTAAATCGGAGTA 325245 30 96.7 35 .............C................ CCATCTGTAATCTCTAGGATTTGCTTGTGCGAACT 325180 30 86.7 36 ...........CA....A.........G.. TCTGTTGTGATCTTACTTTCAAACTCATTCGCCGCT 325114 30 70.0 0 ....C...T.......CA.A..T.C...TC | ========== ====== ====== ====== ============================== ==================================== ================== 9 30 94.8 36 GTTTTAATCTATGTATTGTGAAATGTAAAT # Left flank : AAACAACGAACTGTGGTTCCACGTCAAGGATTTGCCTGGTTCGCATGTTGTGATCCAAGACCCGAATCCCGATGAAACAGCCATCGAAGAGGCCGCCATGATTGCCGCTTATTTCTCAAAAGCACGTCTATCAAGCACCGTCCCTGTTGACGCAACGCTCGTCAAGCACGTGAAAAAACCAAACGGCGCCAAACCCGGCTACGTCATTTACGATAATCAAACGACCTATTTCGTAACGCCTGACGAAGAAAAAGTCCAAGCATTAAAAAATAAATGAGCCATTGCCCCGGTATGATGTGTATCGGGGTTTTCTGTCGATGTTCGGTAACGTAAAATTGCTGGGGGAACGACAGAAAGTTGGGAATCATTGGGAGAGTAGGAGAACGAGGAGATAATGGAACAATCAATTCGTTTTTCCATCCCATTTTCCACCCAAAAATCTAGGGTCGACAGAAAACCACTTTTGAGCTATGATGAGAGTAGAGCTCGCGAGGGTACCA # Right flank : CCATTAAAATCCCCCGCCAAAATAAAAACTCTGGTGGGGGATTTTTTATGTTTGGTTTAAACAAACGATCGGAGCTCCTTGTTTTTTGCGAATTTGTAGCTGGCAATGCTGAAAAATAGGAGTGTGTAGCCGAGTAAAATGATGATGTTTAAACTTAAATCGGCAAGTGTTCCGTTTTGTTGGAGTTTTGAGACGGCGTCCATCACCCAGTATTGCGGCATGAAAGCGGCGATTTTTTGCATGATTTCTGGCATGATAGCAATCGGGATTAGTGCGCCAGAAAGTAGCGTTGAAATCGTGAAAATCGTCGTTTGCATCGCTGAAATACTCCTTCTGCTTCCTGCGACAAAGCCGAATGCGAGTGACAGCACGACCGCCATCAGTGAGAACACCGCAAGGATTGCAAATAAATCGACGTATGCAACACCCGGATTAATCCGGAAGGCAAAACGCATTGCAAAGAGACAAATCAGCACCTCAACAAGCACAATCACATAGGC # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCTATGTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 358561-359453 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYBT01000002.1 Listeria goaensis strain ILCC793, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 358561 36 100.0 30 .................................... AGGCAAGAAAGCTCTTCAATTTAAACTTAA 358627 36 100.0 30 .................................... TATACGTCATGCATACAATACTTCTCTACT 358693 36 100.0 29 .................................... CCATACGCGTTGTTCTACGTTCACTCTGT 358758 36 100.0 30 .................................... CTTGCCAATACAAACCTTTGTCCGTCAATT 358824 36 100.0 30 .................................... TATTTAATGGGTAAAAGACCAAATAAAAGA 358890 36 100.0 30 .................................... TCGTACTCATTATATTGTGATGAGGAATTT 358956 36 100.0 31 .................................... ATTTATCTGCCGTTTCTGGATACGTATAGTA 359023 36 100.0 30 .................................... ACTTTCTCCTGAGCAGATTGCGCAGTGTAT 359089 36 100.0 30 .................................... TTATAACTATTTAGCTAAGGGAGTTAGATA 359155 36 97.2 30 ...................................A CGGAAGATGGATTTTACATCGTATAAGACA 359221 36 100.0 30 .................................... CGTACAACATTCATTCGTCCTCCGGCATGT 359287 36 100.0 29 .................................... ACCGTTTGAAGTTTCAACAGCAGCATTTT 359352 36 100.0 30 .................................... GCACAGAGTCCGTATCAGGCATATCACCCG 359418 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 14 36 99.8 30 GTTTTACAGTAGCTAAAATTCTGAGAGTACTAAAAC # Left flank : GTCATATCGAAGCCATCATTAAATCCATGACAAAAATGGAAAAAGACAATCCAGATATCATTAACGCAAGTCGCAGAAAACGAATTGCAAGAGGAAGTGGCCGTCCAATTCAGGAAATAAACCGCCTCCTCAAACAGTTCAATGAAATGAAAAAAATGATGAAACAAATGTCCGGCGGCATGGGCGGAAAAGGTAAAAAAGGGAAAAATCCATTTGGTAATTTTAAAATGCCGTTTTAAAAATCTTAAAGCAAAAGAGCTTGGGACATAATCAGATTTTTCCCTCTATAAAAGGAAAAATAAAAAAGCATAAATCCAGTAATAATACCATCTTTTAAAATGGGTTTTACTGGGTTTATGCTTATTTTTTATTTATGTTCCAGATTCTTTGCTTGTAAAGCAGGATCGCCAATTCGATATTTGGGAATGTACCATTATTTAGTAAGTTTGTTGATTTGAGAGTACTAAAACAACTAGGCGCTGATGCAGACATGGGCAAAA # Right flank : CCTCAAATTCGTCAATTTAAGGTTCTATAAACTACTTTATTTTTATTATAACACAGAATATATTGGATTTTCTATTCGCTAAATTGTATAATTTGATTAGTACACAAGGTGAGAGGAGATCATCATATGAGAAAATTGGTTTTAGGCCTAGATATTGGTGTTGCTTCAGTAGGATGGGGAATTATAGACGCTACAAATGGGGAAGTAATAGATACTGGGGTAAGATTATTTAGTAGTCGGGACGCTTCAGCTAATGAAGATAGGAGAATTAACCGTCAATCTAGACGCTTAACTAGACGTAAAAAGCATCGAAGAGAAAGAATTAAACATTTACTTATGGAAAATGGTATAAGTACTTGTAATAAAGTGAATGAAAACCCTTACGAGTTAAGAGTGAAGGGGCTACATGAAGAACTAGAAGTATCAGAAATTTATACTGCACTAATGCACTTAGCTAAACGCCGAGGGATTTCTTATTTAGATGATGTAATTGAAGAAGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTACAGTAGCTAAAATTCTGAGAGTACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 4 365371-365733 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYBT01000002.1 Listeria goaensis strain ILCC793, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 365371 36 100.0 30 .................................... TTGAACTAAACGTTCTAACACATGACATGC 365437 36 100.0 30 .................................... CGACTTAGCAAAATGGTACGAGGGTAATGC 365503 36 100.0 30 .................................... ATTCGCTTTAAAAGTAAAAAGCAATGCGCC 365569 36 100.0 30 .................................... ATCTGTTATGGCTTCCGATTCTTTAAATGC 365635 36 100.0 30 .................................... GACGAAAAGTTAGAAGAGATTAAAGAGGTT 365701 33 86.1 0 ..........................C---....G. | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 97.7 31 GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAAC # Left flank : TGATTAAAAATATTGATGATACGTTACGTTATAATGAATTCGAGGAAGTCATGGATCTCATAAAACAACTTACACTAAAATATTCTAATTTTTACTGCATGGTATTTCCAAGTCAAATCGGATACGTTTATGTTAGCGAAGAATACATTGATAGTATATTAGTTATGGGTGAAGAAGCACACTCATTATTTGATAGCGTTACTTTATATGAACGTGTCTGTTCTCATTATCCGGATAAAATTATTCCAACTTACCATGAATTTTTATCATGTTTAAAAATTGTTGCGCCATATTTATTTACGAGCAAAAAACAAAGTATTCGAATGAATGTTAAAGAGTTAGTTTTAATTAAATTAATCAACGAATTATTCCAATACTTTGAGTTTACTCCAGCTCCGGCAATGCTTCATAGTCAACTAGAGTATAATTTTTTGTATGAAAGCTAATAAGTTTTATGATAAGATAGAAAATATCAGTAGTTTTTAAAACCTTAATTTGAG # Right flank : CTGATACATTTTTTGTTCGCTTGCTATGAAACTTAATATGTGAATTATTTCACGAATGAAGAAACTTGTTTTTTTGAAAAAAATTAACTGATTTGAAGTAGGTGTGCAATCTACTTCTTTTTAGTTGTATCCAAGTTACTATGAGCTAAAGGGACTAAAGACTATCGAATGTATTTAAAATCCTGATTTTATCCAACTTTTTATTCAATAAGAACCAAAAGAACTATTTTTATCAGAAAGCTACTTTTTACTTTATTTTTTCCACATTACTCATTATATTATAGATAATCAACTAGAGAATCTGGTAGTCAGGCGAAGGAGGGGTGCATAATTCTGAAAAATTAATATCGTGTTTTTAGGCAAAGAGATTGTTCGGTCTTTGTAGATGTTAAGGGGAGCATACGCAAATTTTTATGAACAGTTGTGATAAACATAGGGGGCCCTTTCATGGATTTTCAATACTCGCCGAAGGGATACGGCGATAGGGGGAAAAATGATGG # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //