Array 1 9633-7092 **** Predicted by CRISPRDetect 2.4 *** >NZ_UENE01000001.1 Streptococcus intermedius B196 strain G1555, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 9632 36 100.0 30 .................................... CGGGTAATTGTACCAGAGCAATTGACACAA 9566 36 100.0 30 .................................... CATTGCTCGAAAGTATGACAGTTCTAGTCC 9500 36 100.0 30 .................................... GGAGAGGTGCAGATAAAATTGTATGAATTA 9434 36 100.0 30 .................................... CAACAGGTAAAATTACATCCGAAACAACAA 9368 36 100.0 30 .................................... AAGAAATGTATGAATTAATATTTAAGTATG 9302 36 100.0 30 .................................... GCGCAGCATGTACTTAATAGCGTTGCCCCA 9236 36 100.0 29 .................................... ACTTAAGGAGCACAAATGAGAAAAACAAT 9171 36 100.0 30 .................................... TAGTATGGACAAAATGGCGTTGCTGACTGC 9105 36 100.0 30 .................................... GATTTAAACCGGATGTCAAGAGTTTTTACG 9039 36 100.0 30 .................................... TATTACTAGTTTAATATCACCACCATAAAA 8973 36 100.0 29 .................................... TTATTAAAATTCTATGTATTTAACATATT 8908 36 100.0 30 .................................... ACTGTATATAACGAGGAAAAGAACTTCTCT 8842 36 100.0 30 .................................... AAATTATGAAACTAACAAAATTTACACTAT 8776 36 100.0 30 .................................... GACACAATCTGAAAAAGATAACACATTATT 8710 36 100.0 30 .................................... TAAGTCAGTTGGTGAATTGAATGAACTTAT 8644 36 100.0 30 .................................... GGTGGAATTGGGGGTCTATAGGATGGAGTG 8578 36 100.0 30 .................................... AATATTGAGAAATAAAATCAACTTCTTGCG 8512 36 100.0 30 .................................... ACAATTTTTCAGCCGAAGCGTTCGAAACTC 8446 36 100.0 30 .................................... GAGATTTTTGTAACGGGATAGCAAGCAGCG 8380 36 100.0 30 .................................... AAAACGGGGTTGAGGATTTGAAGAAAGCCA 8314 36 100.0 30 .................................... AAATTAAGGGAGGACTTGCTTAATGCCATC 8248 36 100.0 30 .................................... GGAGATGTACACCCCAATCATTAGATTTTA 8182 36 100.0 30 .................................... TTTTTTCAAGTGGGAAGTGGTATTTCAACT 8116 36 100.0 31 .................................... CAACTACATTAAGCAGCCAAAAGCTCGGGAA 8049 36 100.0 30 .................................... TTTAATACTAACGTATCTTTTGAATCATTC 7983 36 100.0 30 .................................... CAGTAACCGATACACCAAGCGTTGATATGA 7917 36 100.0 30 .................................... GTTGGAATTGGGGGTCTATAGGATGGACTG 7851 36 100.0 30 .................................... AAACTTCTTGTGGGGTACCGATTTGTTCTA 7785 36 100.0 30 .................................... AATTGAGGGCGGCATGCAGCAAGATTTGTA 7719 36 100.0 30 .................................... TTAATAATATAAATGTTGACAATTGGATTA 7653 36 100.0 30 .................................... GCCACGTTAGCTTTGTGGATTAGAAACAGA 7587 36 100.0 30 .................................... GTAAAAAGTTCCAAGAAACTTGGGACGGCA 7521 36 100.0 30 .................................... GAACAAGCACACGCACACGGAAATCGATTT 7455 36 100.0 29 .................................... AAATGAGGGAAGAATGACAATGGCTATAG 7390 36 100.0 29 .................................... AAATGAGGGAAGAATGACAATGGCTATAG 7325 36 100.0 30 .................................... GTATCAAATGGGTACATTATTTCAAAACGT 7259 36 100.0 30 .................................... CCGGTTTATTGTTAGGTGGATTGTCTGGCA 7193 36 100.0 30 .................................... AAATTATTAAACGTAAAATGCCACGTCCTC 7127 35 77.8 0 ..................AA-..C.T.G.A.....T | C [7096] ========== ====== ====== ====== ==================================== =============================== ================== 39 36 99.4 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Left flank : ACGATTACTTGAATTATTGCTCATTTGTAAAATGTTGCGAGCAACTAGAGGAGATGGCCGACAATTACAATAATTTTAGTGTCATTATTTTCCCGTCAAATGAAGGCTATCTTTATTTGAATCGCGAGAATATGGAATACGTCAATATTGTTTCTGATTTGGTTGAACATTTTTATGAATTTTCTTTTATGTATGAAAGGTTTATTGGTCAATATCCTACTAACGACGTACCTACAGAAGATGATTTCATCGTCTCTTTGCAAAAGATTTCACCATATTTATTTAGTAAAGACGTGACACATATGAGTTTATCTATCCAAGATATGGTAACCTTGAAAATTATGAACAGTTTATACCATTACAACAAGAAAATTCATTTTGCTTATAATCCACCTACTCAATTATTAATTAATTTTTTAAAAAATTAAGATTGACAAGCTCATCAAAGGACTTTATAATCAATGTAAGGGTACAAAAATCAAAAAATTTTTTAATTTGAG # Right flank : TATAGAACTCATTATTGGGCATTATTTATGTAAAAGAAATTTAATCAAATAGTTATCTATGCAAGATATTAGTGGAATTGTAATTTAGGTTGAAATGTTTTATAATGAAAAGGAACAAGTAATATTAGGGGGATTTCTAATGGAGAGAAAAATAAAAAAATCAGTCGTTGCGACCGGCTTAGCTGCAACGACAATCATTTCAGGTAGTCTATCACATGCAGTAAATGCAGAAGAAGCAAAACCAAAATCCACTGAACCAAAGACATCTGAAAAAATTACAAAACCAGTTACAGAATCAGATATTCAATCAGCAAAATTGGAAGCAAATGCTGCGAAAGTTCAGAAAGATACGCAACAGAAAGTTGTAGATCAAGTAAAAGAGGATGTAAATACTTCAAAGGAAGCAGTAGCAAATAACAAGAAAGCCGTAGCAGATGCAGAAACAGAAAAAAATGCAGCGACCTCAGAAGTGATTAGAACTGCAAAAGAAAAAGTAAAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //