Array 1 95277-94455 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNF01000006.1 Cronobacter malonaticus strain cro4164A3 contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95276 29 100.0 32 ............................. CGTTTTTTCATCAACTTACAATTGATTAAGGA 95215 29 100.0 32 ............................. CCTGTGCGCATAACGCCGTAGTGATCAATGAT 95154 29 100.0 32 ............................. AAATTCTCCAACGCTTCTCAGGTGACGTCACG 95093 29 100.0 32 ............................. CCAATCGCCGCAACGTTCATTATCGCGCTGCG 95032 29 100.0 32 ............................. CGCTGGATAATTTCTCTCTTGTTCCTGGAAGC 94971 29 100.0 32 ............................. CAGACCGCGTACGACGGGATGCCGAAAATCAG 94910 29 100.0 32 ............................. ATCTGGCAGGAGAGCGGGGGTAATCATTACGG 94849 29 100.0 32 ............................. CCGTCCCAGGACATCCCCTCGGTGTGAGACGG 94788 29 100.0 32 ............................. GTGCCGAATTACTGCGGCTGGCGCGGCTAGGC 94727 29 100.0 32 ............................. ACGCAGCGTTTATCGAGCGACTGATACTGCGA 94666 29 100.0 32 ............................. ATAAAAAAATAATTGATGAAATAAATGCTTTA 94605 29 100.0 32 ............................. AAGTCTATCTCGGTTTTTCACCCGAAATAGGC 94544 29 100.0 32 ............................. ACGCCGAATACGCTGCGGCAGACGCGTGGCAG 94483 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 100.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGCGTGCGTGAAATGATCTGGCATCAGATAAATAAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCTACGAATCATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAACCGTCGTATCCCGGTGGATTTGGATGGCCTGAGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTAAGCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGAATGTTGTTGCCCGAAAAAGTGTAATAAATACAGTTATATAGTTTTAGA # Right flank : GTATATCAATAACGTGGTTTATTGAATATGTGCAGGAGCATTATTTTATATGGCAATATATAAAAAACAATTCTGAGTTGGGGTATAAAGATAACGGCAATGCTTAAAGAATTAAAGATTATTACATCGCTTCTATTTTTGCTGATTATATTTATATGATTTTTATTGCTGGTTTTTATGTTGGTTAACTTAATTTCAAAGTTGAATACAGTATTTATTAATTTGTGCATGTAGAATTTATATGTTCTTCATTTAATAGGACTTTATAAATGACATGGGATAAATATGCAGCAATACGTCATGCACAGGATCGTGCCTACAGTAATAGCTATCATAAGTGCGAGTTATTTGTTAAAGAAGCTATTATTGCTGGTGGGGTTGATATACATCCAACGCCTTCTGCAAAAGATATGGGTAAGGCATTGATTCAAGCTGGTTTCTATGAGGTTTATGGTGAGCCCGTAGCTGGTGATGTCGCTGTTATTAGCTCGATCCCCGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 122818-121996 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNF01000006.1 Cronobacter malonaticus strain cro4164A3 contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 122817 29 100.0 32 ............................. TAAATTGCACGGATGGCATGCGGGGACGATAT 122756 29 100.0 32 ............................. CAGGGAGGCTGAGGCTCAATATCAGCGCGCTA 122695 29 100.0 32 ............................. TTATCGGCTAATTCAGCCGTTCCGCGTTTAAC 122634 29 100.0 32 ............................. AATTAAGCCGCGAACAGGCGATACTTAACGCA 122573 29 96.6 32 ............A................ CGCACCACTCTTCAACACCTACGGCCAGCGCC 122512 29 100.0 32 ............................. GAATACACAGACGACCAGTTATACGACGCGCT 122451 29 100.0 32 ............................. CGACAAAATAAAAACAAAAAACTTTGGCGACA 122390 29 100.0 32 ............................. TGGGCCGTTCAGCTCCGCTCTTACGTCCTGAA 122329 29 100.0 32 ............................. ATTAACTCCATATCCTTACCAGTTCTTCCTGA 122268 29 96.6 32 ........T.................... CCAGGAAGACATGCTCGACCAGATTATGCGCG 122207 29 100.0 32 ............................. GCTGGGCCTGTATGACCTGCCGGAATACCAGA 122146 29 96.6 32 ............A................ AACTATCTATTTCCTGATAAATGGGGGATTTA 122085 29 96.6 32 ............A................ AACACGTCGTCGTAGGCTTTTCCTGGCCACCA 122024 29 93.1 0 ..........G..............G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAGGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGCTTAACGTTAGT # Right flank : CGGCAGCGTCAATACAGACTTCTTTTGAGAGCCTGTTCTTCACGCCTGTCAATCGCCGCCCCATTTCCCCTCACATTCTTCATCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAACAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAACGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTACTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : CTGTTCCCCGCGAGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 62-456 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNF01000106.1 Cronobacter malonaticus strain cro4164A3 contig106, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 62 29 100.0 32 ............................. TTCGATAATCCGTTTGACCGGTATTTGCGTTT 123 29 100.0 32 ............................. ATAACGTGCGTGATGCTTTCCCCGATCTGCAT 184 29 100.0 32 ............................. TGAGGTAAAAACTTATGCTCCTGAATTTCAGG 245 29 100.0 32 ............................. CCGTTTTCGTTATCCACGGCGAAAACGACGGG 306 29 96.6 32 ..C.......................... GTTCTGCTGGCATTTCACCTCCATTGTTCGCC 367 29 100.0 32 ............................. GCGAGGTTGGGTTGATTGACCAGTTAATGCAG 428 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : AAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAAATACAAGTATATAGTTTTAGAG # Right flank : AGAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //