Array 1 29331-30213 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIE01000017.1 Escherichia coli strain 2014EL-1181-1 Contig_0000017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29331 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 29392 29 100.0 32 ............................. TCACTGTATACCCAACTATTGGAGATCATGTA 29453 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 29514 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 29575 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 29636 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 29697 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 29758 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 29819 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 29880 29 96.6 32 ............T................ GCGACCACGCAGAGCGGCGACAACCTGACGTT 29941 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 30002 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 30063 29 96.6 32 .............T............... AATAGCAATAGTCCATAGATTTGCGAAAACAG 30124 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 30185 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 55763-57072 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIE01000017.1 Escherichia coli strain 2014EL-1181-1 Contig_0000017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 55763 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 55824 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 55885 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 55946 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 56007 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 56068 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 56129 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 56190 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 56251 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 56312 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 56373 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 56434 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 56495 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 56556 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 56617 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 56678 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 56739 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 56800 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 56861 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 56922 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 56983 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 57044 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCTGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //