Array 1 18783-18021 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUHP01000023.1 Clostridium sp. AF12-28 AF12-28.Scaf23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 18782 32 96.9 34 ..........................G..... ACCCGCTCACTTACAACGGCACCGAGCAGCAGCC 18716 32 96.9 32 ..........................G..... CAGTTGTTGACAATCTGCCCCGCGTGCAGCAC 18652 32 100.0 33 ................................ AATTCTTCCATGCTGTTCCTCCTTATGATCTGT 18587 32 100.0 36 ................................ AAGCTGCGCAAATGGCCGGTTCCCGATGAGGTGATT 18519 32 100.0 34 ................................ CAAGCTTAAGAACGGAATCGGAGACATCACGATT 18453 32 100.0 34 ................................ GTACATGGAAGTCCAGTTTCTGTCTCGAATCTAT 18387 32 100.0 34 ................................ CCTCTTCCGGTCCGGCGAACTGATCCAGCTCCTC 18321 32 100.0 35 ................................ AAAGGCACGGCGGAAAGAGTGGGGCAAGGTGGATA 18254 32 100.0 35 ................................ TCCTTTGACATGCCGCATTGATGCAAGAGATAATT 18187 32 100.0 36 ................................ CTTTCCTTGGTAGCTCATTCCTGCCTCACCTCTTTC 18119 32 100.0 35 ................................ TTATAAAAACCGGAATTGCCATATATATCACAAGT 18052 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 99.5 34 ATTTCAACTCACAGCCCCGCAAGGGGACTGAC # Left flank : TTCCTCACGCATTTTATTGATTGCGCATCATCTGAATAATAAAAAAAGCAGATGACGCCAAAACCATCATCTGCTCAAAACGATTCTATTCCATTGGGGTCTGGGGCGCGTCACTCCGCTCCCGTCTGCCTCTGAGCTTTATCGTTTTTTCTTCCAAGTCTGCAATCGCAAATATATTGTCCCTGCACTTATTGACCGATTCACAAGATGATGTGTTTTTCAAACACTGATTATAAAGTAATCAACTTATAAATTTGAGCTTTTAACTCAATCAATAATGTGGGCTTAACCCCACGCGGCGCTTGACCCGCCTGTCCGATGGGCTTAACTTCCGTAGTCTGTTCTGCGGGAGTGGTCATTACATACATTTGCATGAAAACGATAAATGTCTCTTCACACTATTTTTATCATACATGAAAAACACGGGAACTGTCAAGTAAAAAATATTTTACCGCAAGGGGGCTGACCAGAGTCATCCATTTTCCCATCTGGTTCTTTCC # Right flank : AGCAATTTTAGCCAAAAATATTGCCTGACCAAAATTGTTTTTTGTATTTATTTCACATATTTCTACTAATTTCCCCTCGCACTTTCAGGATTTCCATGGCCTTTAGGCTAAGATTTCCCTGTTTTTTCGGTGCGAATGTCCCGAGGTTTTTCTGTATACATACTTCTCGCACTATAATAGCAGCGTTTCCGTAACATCAAATCCCGGCTTAGCGCCAATATGTTCAACCTTATTTTTGTATTTCTCACCCAGATAATAGAATCTCAGACTGTCTACGTCTTTGTCGATGAGATTTTCAAGTATGTTTTTCACCTGTCTGCATTTTGCTGCATCCATCTGACATTCAAATACAGAATTCTGCACTCTCTGCCCATAGTTGGTGCATTCCTTTGCTACCTGACGCAAACGTTTTCTTCCTGCTGCCGTCTGTGTATTCACATCATAAGTAATCAAGACCAGCATTTATTCACCTACTTCCAGAAAAACGGCGGATATTCATC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAACTCACAGCCCCGCAAGGGGACTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 1 1816-1125 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUHP01000012.1 Clostridium sp. AF12-28 AF12-28.Scaf12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 1815 33 97.0 33 T................................ TCTTCCAAAAGTCGTTTTCTTATCCTGTCAGAC 1749 33 97.0 33 A................................ CTCAGAGATTCCGGCACATGCTTTTGATCCGTC 1683 33 100.0 32 ................................. GAGTATTTCGAGTTATAATCCTGAAGAAGCTT 1618 33 97.0 32 A................................ CACCTTCTGGCAGTTATACTTTTAGTTTTGAT 1553 33 100.0 33 ................................. CTTAATGATGCAGAACATTTAAAAGATGTCAAC 1487 33 97.0 33 C................................ TTTGAACGCGAATGCTTTGAGTGTTGCGCTCCC 1421 33 97.0 33 C................................ TTTTCCCGTCATTAGATAATCTACTGATACATT 1355 33 93.9 33 A...............................T CATCTCCGGGGACACAACGGATTTAACGTCAAA 1289 33 87.9 32 A...A.....T.....................T AGGTTCTTGGCCGTTTTTCCGAGATAGGAGTC 1224 33 100.0 32 ................................. GGTTTTGTTTTGATTATTACATCAAAAAACAA 1159 33 78.8 0 A....T.......A.....T....A...A...T | AC [1130] ========== ====== ====== ====== ================================= ================================= ================== 11 33 95.1 33 GGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC # Left flank : ACATTTTTATGGAAATGAGGTGAGACATATGTTAGTATTAATTACCTACGATGTAAACACAGAAACAGCAGCAGGGCGTGCGCGTCTTAGGAAAGTTGCCAAGCAGTGTGTAAACTATGGAAGACGCGTACAGAATTCTGTTTTTGAATGTATCGTGGATAATGCACAATGTATCATGTTAAAATCACTTCTTGCAGACATTATTGATGTCAGCGTTGACAGTCTTCGTTTTTATTACTTGGGAAACAAATATGCAACCAAGGTGGAGCAGATCGGTGTTGACAAGGGAATAGCTGCCGATGATGTGCTGATCGTTTAAATACAAGTCGGTGCGAACCAAAAGCATACATGAAAATGCTAAGGGATTCGCACCTGAAAAAATGCACAAAAATTATGAAATACATTGATTATTGGAATGGATAATTCACATTGAATGGAGATTTATGTACAGTATGCTAAAAGGAAATGTGATGTTTTAGATGGATTTTAGTAATCAATGC # Right flank : CCATACCCCCATTGCAATTTTCCGCTATTTTGTATATACTTAAAATATGAGTGGATAGATGCAGCCGCTATGTGTTGGGCATTTTGCCTGCCGTAGTAGAACGGGGCACTATTCACTCTTTATGCTTATGAACAATCAATAGCCCTCACGCGGACTCCCGCAGCAGCCGGATCAGCTCCTCCATCGCCGGAAGTGTCTGTTTTCCTTTCAGCGTAACGATGAAGTAGCTGGTAGTATCAGCCGGATTTCCGATTCGGAAGCAGCGGACAGGCTTGGGATAGCGGAAATTTTTCATGTACTGGTAGAAGTTGAATGCGATCCCATAGCCCTCCGCGGCGAGCTGACAGGCAGATTCAAGATTTTCGAGGAGAAAGACTTGTCCCGGTTCGGCGTGATCATAAGCAATGGCAAGGTCTGTGTAATGTCTGGAGGACTGATCCGGCTTTTGCAGGATAAAACGTTCCCCGTTAAATTGTTTGAGATCGATCCTTGGACATGGA # Questionable array : NO Score: 8.46 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //