Array 1 44358-44526 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMCB01000012.1 Staphylococcus muscae strain CCM 4175 sequence12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 44358 36 100.0 30 .................................... TCTTGATGTCAGTAGTCCTACATAGCCTTT 44424 36 100.0 30 .................................... ACAAAAGGTTGATTTATTTGAGTATTCTCT 44490 36 77.8 0 .....................T.T..C.TAC.TT.. | C [44517] ========== ====== ====== ====== ==================================== ============================== ================== 3 36 92.6 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Left flank : GATTTATTTTTAACTACATGATGTGTTGTTTTGCCTTTTGCTGCTTTAAATCATTTGGATACACAAAAAGCGCTCATGTCTCTATCATTTTAAGTGACTAAACCAAAAATAAAGAGAAAACATGATGCGCCTACATATAATGATATATTAAAACTAATAAAAATAAAAGATGGAAATATTCAAGTTATGAAGGTGGAAGAAGATGTAGAAGTGCGTGGTCGGTTTTCCACGGTTGTTTATGGAACACTTTCTTATACATCAAAGGTTGAATGAAGTGTGATTGTATCAATGATGGACAAATACATAAATGTGGTAACACTGTTAAAATCTTAAGAATCGTATATCTCAATTTAGTGAAAGAACGCTTTAAGTGTCTACATTGTTTAAAAAATTTATGGCTCAAGCAAGAACCATCTATGTAGAATATTTAAAAGCTGATATATTATTGCTAGAAATAAAAGCTGAATTATTGAAAACATTAGGGTATAATGATGCTAGAG # Right flank : CAAAAGACATGGTAAATTGAAAACAGACGAATTTATATGGAAATCAATTGATAGGAATATTAACTATGTTTAAACGATAATATGGTAATAGCTTTAAAAAGCAAATTGATTAATTAGTAGGACTTTTTCAAAAAGAAAGCGAATATTCAAAAAATATAAGTGAATTTATTTTAATATTAATGAGTTAGCTAAAACAATTGAATATTATAGTAAATCTCTCTCGAAAATCAAAATGAAAAGGTGATATGATGAGAAAAGAAATTGAAAAGTTATTAGAGTCTGATATATCGCATTATAAAATTTCAAAAGTAACAGGTGTAAACAGTAAGACAATTTCGGAATTACGAGCTGGGAAACGTAAGATTGGCAATATCACACTAGATACTGCTGAAAAACTATATAATTATCAAATACAGCTGGAAGATAAATGAATAAATCTCACTTATTAATTTGGGTGGGGTTAATTGTTGTTTAATTGATACCATTATGACGCGTAAAAT # Questionable array : NO Score: 4.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 42618-43048 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMCB01000009.1 Staphylococcus muscae strain CCM 4175 sequence09, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 42618 36 100.0 30 .................................... AAAAAAATTAAAAGATTACTAGACAGTGAT 42684 36 100.0 30 .................................... CATTAACAGTTTGTCGTGAATTAACACTTA 42750 36 100.0 29 .................................... TTTACGCCGCCACGCCCTTACGCTAAGTT 42815 36 100.0 30 .................................... AAAAAGAAAAAAACCGCTTGGGAAAGACGA 42881 36 100.0 30 .................................... TCACGCACTCTTGCCCCATATAGTTTTGCA 42947 36 100.0 30 .................................... TTCCATTTTTGGGGCGAAGCCGGGGGTGCA 43013 36 77.8 0 ...................CCG...G...A.T.GC. | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 96.8 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Left flank : GTATGATCAATGTTACAGATATTCCAGCATCATATCAAAAACAACTTCACACTGACAGCGGCGTTTATGTTGCAGAAGTTCAACGCAGTCAAAGCGGGTTGAAACGTGGTGATATCATCACTAAAATCGATGATCAGAAAGTTGAAAACGATTCTGATTTACGCTCGTATTTATACAAAAATAAACAACCGGGAGATTCTGTTAAATTTACAGTTATACGTAATGGACAATCCGAAAACGTAAATGTAACATTAGTTGAGTCTCAATAATTAGATAAAACCATTGAAATGTTATTTCTGGCATTTCAATGGTTTTTTTCAATAAACTAATGAAGATTGATGAAACCTTCTATACATATTTCACAAAGTTGATATATCATTTCTCATTAATATCGCTGCATAGTTATGTCTTTTAGAAAAAACTTCAATACTTCTATAATCGAAAAATAGTGAAAATAACTGCTGAATTATTAAAAAGGATAAGGTACAATAATGCTAGAG # Right flank : CGGAAATTGTTGCTTTTGAATACTTTATAATAGGTGTACCTGTCGTTTTTTTAAGTTCTTTCATTTTAAAATTCAATAATCTTTTCTAAATTCTTATTGTAGATACATATAAAAGTATAAGAATCAATAACTATCACGATTAATAATTTAAACTCTTCCCTATATTCTAGAGACTGTTACAATTCTCACTCCTACTTCTCATTTCTATATAACTAAAAAAGCCAGTGATGACTCAATTAGAATACATCACTGACTTTTTCGTTTTATTGATAATTTACCATGAAATATTTTTTCTTACCACGACGAACAATTGTGAATGCGTTGTCATATTTATCTGCTTCTGACAATTCATAAGCTAAATCCGTTTCGCGTTCACCATTAATATAAATCGCACCGTTTTGGACATCTTCACGTGCTTGACGCTTAGAAGATGAAATTTTTGTTTCAACAAGTGCTTCTACGATATTTGTCGTTTTATTTGATAATATAACTTGCGGTAC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //