Array 1 4369121-4364216 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007810.1 Xanthomonas oryzae pv. oryzicola strain YM15 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 4369120 31 100.0 35 ............................... CCACATCTCCATATCTGCAATGTCCCAAATGAACA 4369054 31 100.0 35 ............................... TCCTTTTTCGCAATTTACCAGCAGTCTTTTTGCCT 4368988 31 100.0 36 ............................... CGAAGCAACACGCGCACGGCAGCGCCTCGCAAAAAC 4368921 31 100.0 34 ............................... AACAGTCCCATGAAGACTATAAGCGCGAGCTGGG 4368856 31 100.0 36 ............................... TCCGGGGGCAGCTAAAGCTGGCTAAGGATCGTGGTC 4368789 31 100.0 35 ............................... CCCCGCTGGTCCTATGCCAACAAGATCAAGCTAGA 4368723 31 100.0 35 ............................... ACCCCCGCGCCGCTCGCCGGCCCGATCCGCTCGGT 4368657 31 100.0 35 ............................... CGTAGCCAGCGAGGTCTCTCAGATGATCCCGCAAC 4368591 31 100.0 34 ............................... CAGTAGGTCTGGTTGGACCACTTGCAATCTGAGC 4368526 31 100.0 34 ............................... TTCGTCGTTGTGCTGCTAAAGGTCAGCTGCACAC 4368461 31 100.0 35 ............................... TCTACCTCTCTTGAATGTGCCTTCTCCGCCGATAG 4368395 31 100.0 37 ............................... AAATCAGCATCCGGCGTAATACCTACAACACGTACAG 4368327 31 100.0 34 ............................... TATCCTCATCCTGGAGCGATCCACCCGGTTGGCT 4368262 31 100.0 34 ............................... TTTTTACAGCGGCCAACTACAGAAAGTCCCAAAA 4368197 31 100.0 35 ............................... GAGAGTGGTTGGCGGCGGTGTTCGAGAGCGAGCCG 4368131 31 100.0 35 ............................... TCGCGACGACGCAGCAGACCCCCTGGACCGCCAAT 4368065 31 100.0 37 ............................... GCAGGCAGCGGTCGCCGGTACGGATACGGTAGCCCGC 4367997 31 100.0 34 ............................... AACTACTGTTAAGAAAAGAAAAATTCGGAATCCG 4367932 31 100.0 35 ............................... ACCTACTGCTATTGAGTACACCCTCAAACATGATG 4367866 31 100.0 35 ............................... TGGGTGTAAGCACTGAGGATGAGGACTATCTGGGG 4367800 31 100.0 34 ............................... TCAGATCGCATTTGTCCAGTCGCTCGTCGAGAGT 4367735 31 100.0 35 ............................... AGGTAGTAGTTGTACCGATAGTCATTTGCCTCACA 4367669 31 100.0 35 ............................... CTCAGATGCTGCGGATTACTTCGATCTTGATGGAT 4367603 31 100.0 36 ............................... CCTGACTGAGGCCCCGGACGACGGCAGCTACGCCGC 4367536 31 100.0 35 ............................... ACGTATGCCAGCGACGGCAGCTCAGTCCCTTATAG 4367470 31 100.0 35 ............................... CACGTTGACCCGGAGCCGCACACGTTCTTCGGCCT 4367404 31 100.0 36 ............................... AGCTGCAAATCAAAAAACAAACCGGGCATCGTCGGG 4367337 31 100.0 33 ............................... TGCGGCGATCGGAAACCCATCCGCCCAGGGGTC 4367273 31 100.0 35 ............................... GGCTTATCCTTTGTGCTGCCCCACATCACAATCGC 4367207 31 100.0 35 ............................... ACATCAAACCCCCTTCACGAATCCTTGCAGCTGTC 4367141 31 100.0 35 ............................... CCACGGTGGTCATATGCCAATAAGATTAAGTTAGA 4367075 31 100.0 35 ............................... TTCACGAGCTGTCAAGGGGCCGAGGCCGGAACCTC 4367009 31 100.0 35 ............................... CTCGCATGGTGTTTTGAGTACATAGACTTTATTGA 4366943 31 100.0 34 ............................... ATTGCATCCTTGCCAAAGGATGAATACAACGATT 4366878 31 100.0 35 ............................... CTTGCCAAACATGCCAATATTGAAATCGGAATGAA 4366812 31 100.0 35 ............................... ATACGGGTCGCAAAAGGCCAGTGAATCACCAGAGG 4366746 31 100.0 35 ............................... AAAGGGTGGTGGCTACAAGCCCCCGGAGGCTGGCC 4366680 31 100.0 36 ............................... AGGATGTTTGCCGGCGTGCATGTTGTGTGGCGAACA 4366613 31 100.0 34 ............................... GATGAGGTATCCACAGAGCTTGCAAAGGTACACG 4366548 31 100.0 34 ............................... CAGGGTGCGCAAAATCTTGGCGTGTTTGAACACA 4366483 31 100.0 34 ............................... ACTCTTGCCCAATGTTTGGTGCTGTGCCTTGGCC 4366418 31 100.0 34 ............................... AGAGGACACAGGTTATTCAACAGCCCAGCAGGTC 4366353 31 100.0 34 ............................... AACTTAGGAGTATTGGCAATGGCAGAAAATCAAA 4366288 31 100.0 35 ............................... AGCTGACAGATTGCCAACAGTGGTAAACAGCTCAT 4366222 31 100.0 36 ............................... CGACCCACCACCACAAAGGCAACCTGAGAGGACCAA 4366155 31 100.0 37 ............................... AACGTCATCAACCGGATCGGCGCTGGCGCGGTTGCAC 4366087 31 100.0 34 ............................... AAATAACCGGCATCGTTGGTAAGCAGCCTGACGG 4366022 31 100.0 37 ............................... AAGCACGACCGTGTGCGGGTGGCGGCATCGTGGGCAA 4365954 31 100.0 36 ............................... GTCGAGTGGGCCGAAAAGTGGGAAGGCAACGGCACC 4365887 31 100.0 36 ............................... AGCCCGGTGAGCGCGTAGCCTGTCAGGCGTTGCAAG 4365820 31 100.0 35 ............................... AGAGCCTGGTTACCGAGGTGGACAAAGCATCCACT 4365754 31 100.0 34 ............................... GCGGTCGAGCTTGCGGTAGATGCCGCCGGGAACC 4365689 31 100.0 34 ............................... ATACATGGGTTCCTTTGGTTGCGCCGAGTAGCGT 4365624 31 100.0 34 ............................... TGCACAACAACGCCACAGCAATATCCACAGACCT 4365559 31 100.0 33 ............................... GGAAGCCGAGCGCATCATCAACCTGTACCGCGA 4365495 31 100.0 34 ............................... TTCCCCACATCCCTTGCATAGGAGAACACACCCG 4365430 31 100.0 37 ............................... TCATGGTCAAAGAACAAGTCCACATCCCCTTGATGTG 4365362 31 100.0 34 ............................... AGATGATAGCGGGTCGATTTGGACGACAGCAGCT 4365297 31 100.0 33 ............................... CTTTTCCCACCGAGGGGCATCCGAATCTGGCAC 4365233 31 100.0 36 ............................... AGGAAACCAGCAGATGCACTGCCGGACCAACCTTCG 4365166 31 100.0 34 ............................... GGCACAGGTGGTAGCCCGTCTGCTGCTGTTGAGA 4365101 31 100.0 34 ............................... AGTAAGGTCAACGCGAACTTCGCCGATGTTCAGG 4365036 31 100.0 35 ............................... TGGTGCAGATACAAGGCGGCCAAAACCCACTGACA 4364970 31 100.0 34 ............................... CGGAATGGTCAGCTACAGAGTGTGTATTATCAGA 4364905 31 100.0 37 ............................... CGCCCAGACACCCTCATCATCGATGAGGCCCATTACC 4364837 31 100.0 34 ............................... GCGCTCCCATAACCACTTTGGGGCCTGTGTCTGG 4364772 31 100.0 36 ............................... GGCGCGATGGCTTCCGAGCCGCAATGCGTGCAGCCA 4364705 31 100.0 36 ............................... GCGTTCCGGGCCAGCGGTGCGCCCGCGCGCTCTAGT 4364638 31 100.0 35 ............................... TGGACGGGCCAGTTCCTTGAGGACTCTTCCGGCCG 4364572 31 100.0 36 ............................... ACCTCCGACGGTGCCTGGTCGCGTATGTGGCCCGGT 4364505 31 100.0 34 ............................... TGGAACGTCGTGGAAAGTGTCAATGGCGTAGATG 4364440 31 100.0 34 ............................... ATTTGTTGGTTGAGCTGATCACTTCGTGGGATGC 4364375 31 96.8 33 ...............A............... CAGAACAGATCACCCGTCTCTGGGTCATATCTT 4364311 31 100.0 34 ............................... TAGTGCCGCCTCGCCCGCCATATCCATTTGTGCC 4364246 31 96.8 0 ..............A................ | ========== ====== ====== ====== =============================== ===================================== ================== 75 31 99.9 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATCGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTTATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCAGG # Right flank : AACCGAACTGAAACCCGGCGACCGGGTCCGCATTAGGGAACCTCTGAACAACGCACCACAAATGCGAGACACTATTTGTTCGGAATGAGGAGGCATCCATGCAACTGCAGCATTTTTGCTGTCATTGAAATGCAAGAAGCTGGAATTTTAGAGGTTTGATGGGTTGTTCAGACCTTCCCTAGGTGATCCTGCAGGTCGGTGACTGGCGTCTGGCTTTCCACCAAGACTTTGCGAATCAGCGGTGTCGTGATGCTGTCGAAAAACCGTTCCAGATCTGCTTGGAAGAATGCCCGGCTCTTTGCGTGGGGTTCGACCGCCTGTATGAGGGATGCGCCTCTGCGGTAGGCAAAGGAGACCGAAGCGTTGATAGGTAGATGATCTAGAACAACACGATTCAGGAAGACGTGGAAGTCCTTCAGGGTGCTGGACGGCTTGTAGATGGTGCGGCTCTTCCAGCGGACAAGACTGTGGTTCTCTTCAGCAGAGATCGCCAAAAAATC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //