Array 1 1000173-1002275 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043667.1 Salmonella enterica subsp. enterica serovar Kentucky strain 162835 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1000173 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 1000234 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 1000295 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 1000356 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 1000418 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1000479 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 1000540 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 1000601 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 1000662 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 1000723 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 1000784 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 1000845 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 1000906 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 1000967 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 1001028 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 1001089 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 1001150 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 1001211 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 1001272 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 1001333 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 1001394 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 1001455 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 1001516 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 1001577 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 1001638 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 1001699 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 1001760 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 1001821 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 1001882 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 1001943 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 1002004 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 1002065 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 1002126 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 1002187 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 1002248 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1019908-1021889 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043667.1 Salmonella enterica subsp. enterica serovar Kentucky strain 162835 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1019908 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 1019969 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 1020030 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 1020091 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 1020152 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 1020213 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 1020274 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 1020335 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 1020396 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 1020457 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 1020518 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 1020579 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 1020640 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 1020701 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 1020762 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 1020823 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 1020884 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 1020945 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 1021006 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 1021067 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 1021128 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 1021189 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 1021250 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 1021311 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 1021372 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 1021433 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 1021494 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 1021555 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 1021616 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 1021677 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 1021738 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 1021799 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 1021860 29 100.0 0 ............................. | A [1021887] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //