Array 1 41650-45651 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCMW010000004.1 Lacticaseibacillus rhamnosus strain Lr-G14 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 41650 36 100.0 30 .................................... TGCGACTAACACCTGCGATCAAAGCGAAAC 41716 36 100.0 30 .................................... TGCCAGTTGCTGGAGGAGATCACAACGACT 41782 36 100.0 31 .................................... TGAAGACAAGGTTGCGCCCTGTACACTGTTA 41849 36 100.0 31 .................................... TGAAGACAAGGTTGCGCCCTGTACACTGTTA 41916 36 100.0 30 .................................... GCATTCAGCGTTGGGACAATCCTTCCAGAA 41982 36 100.0 30 .................................... TAATTCGCAGCTAAAACGTGTCACCGAGCA 42048 36 100.0 30 .................................... TAATTCGCAGCTAAAACGTGTCACCGAGCA 42114 36 100.0 30 .................................... TAATTCGCAGCTAAAACGTGTCACCGAGCA 42180 36 100.0 30 .................................... TAATTCGCAGCTAAAACGTGTCACCGAGCA 42246 36 100.0 30 .................................... TAATTCGCAGCTAAAACGTGTCACCGAGCA 42312 36 100.0 30 .................................... TAATTCGCAGCTAAAACGTGTCACCGAGCA 42378 36 100.0 30 .................................... TAATTCGCAGCTAAAACGTGTCACCGAGCA 42444 36 100.0 30 .................................... TAATTCGCAGCTAAAACGTGTCACCGAGCA 42510 36 100.0 30 .................................... TAATGTGCCGGTGGGAGCAATGGTGTTATC 42576 36 100.0 30 .................................... AGTAAGGTAGCCAAATACAACCATAAGGGT 42642 36 100.0 30 .................................... AACTATCTAACACGCTATACACAGAATGGC 42708 36 100.0 30 .................................... TTTAATATGCAGGCGGCGACTGATTTATTT 42774 36 100.0 30 .................................... TGATTTGCGAGATGTCGCGATAAGAAGTCA 42840 36 100.0 30 .................................... TGATTTGCGAGATGTCGCGATAAGAAGTCA 42906 36 100.0 30 .................................... GACAACAGACTCCGTCAACATCAGTCTTAA 42972 36 100.0 30 .................................... ATAAACATCGTATGCGAATCGTAACAACGT 43038 36 100.0 30 .................................... AGTTGATTGAGGCGCGGATGTACATTCCTG 43104 36 100.0 30 .................................... CGGCACGCTATTCCATCCGATTAGCTACTT 43170 36 100.0 30 .................................... CCGTTTTGGTTGCAAAACGAACCGATTACG 43236 36 100.0 30 .................................... AAGGTGTACTGCTTAGCTGACTCCCACGTG 43302 36 100.0 30 .................................... GAAAGTTCTTTAAGTTGACCACTCATTTCA 43368 36 100.0 32 .................................... TCAGGGTGCCGGCTACATATACACGACTTTCG 43436 36 100.0 30 .................................... TCTGGAAGCCCGCAATAGTCAATTGAAGCT 43502 36 100.0 30 .................................... AAATGGTTTGAATACCCTTATCCCGCCATT 43568 36 100.0 30 .................................... TAATGACGCTTAACGCTCTCCGGTTGGTCT 43634 36 100.0 30 .................................... TAATGACGCTTAACGCTCTCCGGTTGGTCT 43700 36 100.0 30 .................................... AGTCGTGCAAATCCACGTGCGCGCGTTGCA 43766 36 100.0 30 .................................... TTTTATGATGGGCTTGTATTTTCCCAAATA 43832 36 100.0 30 .................................... GGCAATTTTAAAGCCGTGACCGATGCCACG 43898 36 100.0 30 .................................... AATAGCAACCGAAAGCGCTCCAGTGTCGCC 43964 36 100.0 30 .................................... GTAGTGCATACCATCATCACGAGTGCCGTT 44030 36 100.0 30 .................................... GAATGATATACCATCGGAACGCGTGGTAAT 44096 36 97.2 30 .........C.......................... AATAGCCAAGAAAATACCGGCACGATTTAC 44162 36 94.4 30 ............................A..T.... TTAGTGCATACCATCATCACGAGTGCCGTT 44228 36 97.2 30 ...........................A........ TGAACACGATGACGTAAAAGAAATGTATGT 44294 36 100.0 30 .................................... TGAACACGATGACGTAAAAGAAATGTATGT 44360 36 100.0 30 .................................... GAATGTTTTACCATCGGAACGCGTGGTAAT 44426 36 100.0 30 .................................... AATAGCCAAGTCAATACCGGCACGATTTAC 44492 36 94.4 30 .........C.................A........ TGAACACGATGCCGTAAAAGAAATGTATGT 44558 36 94.4 30 ..............G...................C. GAATGTTTTACCATCGGAACGCGTGGTAAT 44624 36 100.0 30 .................................... AATAGCCAAGTAAATACCGGCACGATTTAC 44690 36 100.0 30 .................................... CAACATCAACAACAGCCGGCAATTGCTGCC 44756 36 100.0 30 .................................... ATGACGCAGTTGGCGAAACCTTTGCACGTT 44822 36 100.0 30 .................................... GCGAGTTAGTCGCTTGTGTGGCTTACCGTT 44888 36 97.2 30 ................T................... GCGGCATCTTCAAAATCAAAACGACGCGCA 44954 36 100.0 30 .................................... GCGAGTTAGTCGCTTGTGTGGCTTACCGTT 45020 36 100.0 30 .................................... TCGCTGACATTGACCATCAACGGCGCCGAG 45086 36 100.0 30 .................................... GCGTGTTAGTCGCTTGTGTGGCTTACCGTT 45152 36 100.0 30 .................................... TCGCTGACATTGACCATCAACGGCGCCGAG 45218 36 100.0 30 .................................... GCGTGTTAGTCGCTTGTGTGGCTTACCGTT 45284 36 100.0 30 .................................... GCGGCATCTTCAAAATCAAAACGACGCGCA 45350 36 100.0 30 .................................... CAATATTTTGCCCCTTGTTCCGTTGCGCCA 45416 36 100.0 30 .................................... GTTGACGCGTTGCGCTGTCGCTGGCCGTTG 45482 36 100.0 30 .................................... TGATGACGAAGTGAGTTTGCCCACCGCTTG 45548 36 100.0 30 .................................... ACTCGGGTATTGACAAAGATCGACGCGGCA 45614 36 86.1 0 .......................AA.C....T...G | C,G [45640,45646] ========== ====== ====== ====== ==================================== ================================ ================== 61 36 99.4 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : GAGCTGGATTTGGACAAGTTATTTCAACGCTTGATCATCAAAAAGGTAAGCCAATTGATAGAGGATCAGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAGGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTCAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTGCCAACATCAGTCATTATTTAGATGTTGAAAGTCTGAGCAAGCTGTTAGATCAGGTTAAGAACACATCGTTGGAATTACTTCTCATTGAATTTTCAGATGTCGAACGCAGAAAGTTTTTTGAGAAGTGCCAGTATATCTATATTGACAGAGATTTTATGGATAGCCGAGAACTGATTGATTAAGAGGCTGTGTGAAAACACCG # Right flank : GACTCACCTCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCAATGTCAAAAGCGAAACTAATCCTTTCGCCAGTATTTTACACTGATCTCAAAGAAATCCGTCACATGTACCAACAGGCGTTCAAATCACTTTACGGCAAATATCAAGATCGGGAAACCAATCCCTACTGTGAATCGTTGAAAAGCTTACAGAAAAAGTTCAAACGGCCTAACAATGCCTTCTTCTTTATAACCGTTGAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCTCAAAAATTCGGCAGCCCGTATTTCACCATTTTTAATCTTGCCGTTTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCCAAGTTGGTACATTTGTATCGCAAAGTCGGTTTTCAGCAGCTACCAGATCGGGAAACGACGATTAATGAGCAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //