Array 1 90612-91128 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVBX01000016.1 Cronobacter sakazakii strain MOD1_O26_1 O26_1_contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90612 29 93.1 32 .C.........A................. TCCCTTCGCATGTCTGGCGCTACGTTGATTAA 90673 29 93.1 32 .C.........A................. GCAACCCATTTCACGGCCTGCGCAGGCGTTCG 90734 29 100.0 32 ............................. GCCGCTGAATCAATAAAAGCTGGCGACTATCC 90795 29 100.0 32 ............................. GACTATGGCCCGGTCAAGGCCTGGCTCGACGC 90856 29 100.0 32 ............................. TTTTTGCCGTTCGCTGCGCCCTTATCGCTGTA 90917 29 100.0 32 ............................. TCAAAGCAGTAGCGTAACGTGAGGCATTTATG 90978 29 100.0 32 ............................. GGGCAGTATTTCGACTCTGTCGTCACCGCAAA 91039 29 100.0 32 ............................. TACGGCGCTTGCAGCTCTTGCGATCATTATGG 91100 29 89.7 0 .....................TA.....T | ========== ====== ====== ====== ============================= ================================ ================== 9 29 97.3 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGATCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCAAATCAGTACAAAGGGTTACCGTTAGT # Right flank : TACGCCACCTGATTCACGGCGCTGATGTGACATATGGATCACGATTTCAGTCATACCTTTATTGAACCCGCTTCGGCGGGTTTTGTCACATCCCGTTCCCTGTTACTCTTTTGGCACATTTATCAAAGGGAATAGGGATATGAAGAAGGTTGTCATGGCTATTATTTTAGGCTCTTTTCTAACTGGCTGCGCGCCTGGCTACGTTTATACGCCACCTTCTAAGGTGGAATATGATAAAACCATGCAAGAAGCAAAGCGCAAGGACGCAGAGTTTGCTGAAAAAGTAAAAAATATAAATTTAGATACTGCGGATGTTGGGGTAAAGCCGAAGGATTACCAATCTTTGGTTGAATCGGCGATTCGTGAAGGTTTGAAAGATCCAGACTCTGCTAAGTTCTACGACTTCACCTCGCCACGCAAAGAAGTAATGGTTGAACAGGGTGACTTTGTTTATGGCTACTCGACATGTGTTTATGTTAACGCCAAGAATTCATATGGTG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : CCGTTCCCCGCACGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 118206-119882 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVBX01000016.1 Cronobacter sakazakii strain MOD1_O26_1 O26_1_contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 118206 29 93.1 32 .T..........C................ GGTACGCCGTGTTGCAGGACTGGGCTGTTTCG 118267 29 93.1 32 .T..........C................ ATCACGACGAGATTCTGTTTACGCTGCTGACA 118328 29 93.1 32 .T..........C................ CTTGCTCTGGAGGAATATTGTCGAACTGTAGA 118389 29 93.1 32 .T..........C................ GCGCCGGGTTAACGCCTGCGGGTAAAGCGCTC 118450 29 93.1 32 .T..........C................ ATTCCGGGCGTCCATATATGCGCCACAAATCG 118511 29 93.1 32 .T..........C................ GCTGCTATCTCGGGTATTTACGACGCGATCCA 118572 29 93.1 32 .T..........C................ ACCTTCGACACCGGGTTTCAGACTGACCAGCC 118633 29 100.0 33 ............................. ATATTGACCGCCACGTATGACGCCGAGGCAGAC 118695 29 100.0 32 ............................. CTCGTCATACAGGGCATTTGCAAGACGGGTAT 118756 29 100.0 32 ............................. CATCTTGTTAAAGTCGTCGTGATCGGGCCAGC 118817 29 100.0 32 ............................. AGATCCTGAATGAGACCGAGCAGAACACCATC 118878 29 100.0 32 ............................. ATTTCATTGGTAACTGAGTTGACTGACGAGGA 118939 29 100.0 32 ............................. GATTACCGCCATCTCGTCACGCAACTTTTCAT 119000 29 100.0 32 ............................. TGGGAACGCATTCTGAAGGAAGACCCGGCATC 119061 29 100.0 32 ............................. GTGGCTTGACTCCGCGCAGGGTCTGCCGTGGT 119122 29 100.0 32 ............................. GGCCACATCATCAAACTGGATACCGTGTTTAC 119183 29 100.0 32 ............................. GCCGCATTGCAGGAACCACTTATTTTAAACTG 119244 29 100.0 32 ............................. CGTCGTCACTCGTTGGTAGTGCCAGCGCCGCA 119305 29 100.0 32 ............................. GCATTATCCAGGTGGGTAGCGTCATTCAGATG 119366 29 100.0 32 ............................. CTTCCACCGCCAGACTTACAGACTCCGCTCAA 119427 29 100.0 32 ............................. CTCAGCGATACGCGCGTCTTTCTCCCTGCAAT 119488 29 96.6 32 ............C................ GTAGTGACGCTGACGTGATGGTCTGCTTCGGT 119549 29 93.1 32 .T..........C................ GCTCATTCATTTGAGTTCTCTCCTTTATTATC 119610 29 93.1 32 .T..........C................ CAGTACGGAAAAATGACCCGCGCGGCGGTCTC 119671 29 89.7 32 .T......G...C................ GAGAAATAACCCTTGTGGTCTGTTCGCCCTAT 119732 29 89.7 32 .T..........C....C........... TCAAAACCTGAAATTTTTAATTTCGCGGGTGT 119793 29 89.7 32 .T..........C.....C.......... GCACCAGCATTAACGCCGAATACATAATTATG 119854 29 96.6 0 .T........................... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 96.4 32 GAGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : ACCGTACTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGATGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATTCCGGTGGATTTGGACGGCCTGCGGCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGAATGTTGTTGCGCGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GTTATTGAGTAGAATCGTCTGCCTTGGTGGCTGCGCTTTGCTTACCCAGCCTACATATAAACTGGCGGGCCTGCCCTTAACCGCCCCACAAAAATTTTCTCGCGCCTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGTGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATT # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : GTTCCCCGCGCGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //