Array 1 598468-598838 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011114.1 Paenibacillus durus ATCC 35681 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 598468 32 100.0 36 ................................ TTTTGGAGTGGTATTCGTACAAAATATTTGCCGTAC 598536 32 100.0 35 ................................ ATGTAAAGATCCGACATTATTTAGCCTCCTTTGCT 598603 32 100.0 37 ................................ TTGGATCAGTATAGCCGGACCGCCGGAGCGATTGGTA 598672 32 100.0 36 ................................ AACGATGTAATCATCTAAGTGTTCGGGGGCATCAAT 598740 32 93.8 35 ......................A........A TTCGCTTGGCAGCTTACGGGTGGATACCGAATGTG 598807 31 75.0 0 .......G..-..GT....TA..A.......A | C [598811] ========== ====== ====== ====== ================================ ===================================== ================== 6 32 94.8 36 GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAT # Left flank : ATGAACGGGCAATTGCTGCCCCGGTCCAAAGTTCAAGACAAAAACTGTATGCTTGTCTTCTTTAAAGACAATGCGCTTGGTGAATCGGTCCGTTTGATATTCTTGAAATTGAACTAGCTCTTTCTTTTCCATTTGAAAATCACTCTCCTTGTTTTGAATTAATCAGGCCCTACAGCCGGATTTCGTATTCGCAGAACTAATTAGATTGTATAAGAATCAGACAGATGGCTAGTGATTTCAATCACATTATTTTCAATCGAATCGTGAAAGGCTTGTCTTGTTGCTGCTTTTTCCTGCTTATGATCACCCGTTCCAAGTGGCTGAGCCTTCTCAGGTGCGAACCCCAAGCGCACATAAAAACCCTGGGAGGTTCGCACCTCTTGCGGGGCAAGGGTTTTCGCGTTATTTTATAGAAGGAGCCCCCCTTTAAACGGTCATTTTAAGGGGTTCGCACTAAAGCGTTTGCATTCCCTTGCGCAGCAAGGGGTTACACTGATGCT # Right flank : ATGGCATTTGAACTATCACTAAGCGAAATGAAGGGGATCTTAATCAGAAAGAGGGACAAATGACTTTGAAAGCCAATAACACTATCTATCGGTTAGAAACCTGTTAAGGCTGATGCCGTCTTTTAGACCTTGCTTATACATCAATGTTTCTGCAATTCCTTGAAGTAGGGCAGTGCTCGTATCATAATTTTGCAGCATTTCTTTGTATTCTTGGGGAAGATCGGTCATTAGAGTTAAGAACAACTGATTGCATTCTTCAATCAATTGCCTGTATTCATTACAGTTAGACAAAATCGAGTTAGCTATATACTCCATACGAGCGGAAAGAAACTGGTTAAAAGCTTGCTCCATGTATGCCATGAATGTCCTCCGACAAAATAATATCAAGGGTTGTATAAAATAAATTATATAGTGACATCACTTAGATGTCAACATGAATGTATGAGCGGAAATTTCATAATGATACAATAATGACATCACTTTTGGGGAGTATTAAACAT # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 600041-601410 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011114.1 Paenibacillus durus ATCC 35681 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 600041 32 100.0 33 ................................ CTCCCACAGAACCGGAGCCGGAGCGTAAAGGGA 600106 32 100.0 36 ................................ CTTGGGCGTCGTCGATGCTTCGCCACTCTCGTACCG 600174 32 100.0 36 ................................ TTCACGGTTGAAGGCGATACTTCAAACTGTCTTGCC 600242 32 100.0 34 ................................ GGGTTAGCGGTTGGCGGATCGGAGTTTACGGATG 600308 32 100.0 35 ................................ ATCTTTGCCAAGTTATTTATCAGATCGCGAACAGC 600375 32 100.0 35 ................................ TTGGAGCCAGTACACACCAGCCTCTGCTGCTCCTT 600442 32 100.0 35 ................................ AACTGCACCGTTCCCGGCGATCCCGCCACAGCCAC 600509 32 100.0 34 ................................ CGTTAATACTCCGCCCGTATCACGCAAGTTGTAC 600575 32 100.0 33 ................................ ACTGGTGAAGCCCTACGGTCTTGGTCTTTATAA 600640 32 100.0 37 ................................ CATGTTACTTCTGTGCTTTGCTCTGACTCATCCCACG 600709 32 100.0 36 ................................ TGTCCAAGTGGATGCTTGTCGATCCTCGGCCTTGTC 600777 32 100.0 34 ................................ GAGACAACGAGAACGCTGATAAGCCATACTCAGA 600843 32 100.0 34 ................................ CATCTAAACCAAGAAGAAACATTATCGTGGCAAC 600909 32 100.0 33 ................................ AACCGAATGAACCAGCCAACGAGAAGTCCTATG 600974 32 100.0 37 ................................ TACACGAATTGGTTTCCCGTTTACATATTCCGTCGTC 601043 32 100.0 33 ................................ CTGAGCATGCAGCTATGGTAATTGGGAGCCCCG 601108 32 100.0 36 ................................ CCGTTGACTGATCTCATGGTCATTTTGGGGCTTGTC 601176 32 96.9 37 .......................T........ AGATCAACCTGGACAAGCTGGACATCCCCTCCTACAA 601245 32 100.0 35 ................................ AATTGAATCTCTCGAAATATTTTTGATAAAAAAAC 601312 32 100.0 36 ................................ CGCTATGAAATGGTTTATTGTGGGCGGGGCGTTATT 601380 31 93.8 0 ...................T.....-...... | ========== ====== ====== ====== ================================ ===================================== ================== 21 32 99.6 35 GTCGCTCTCCATGCGAGAGCGTGGATTGAAAT # Left flank : CTCTGCTTCCAGTAGACCCTAAATATAGCCGCGACAAAGTAAAAGTCTTTCCACAAGAAAACAAACGATACGGTTAGAGTATAAAACTTACACTTAAATAGAGAAGAGTATTCCTTCCTAAGCAATATTAATCCTCCGCATTTCGTGCTTGCCCATTATTTTTTATATTTAAAGATGACACTGACCCGTTCACAACAGAACTGGTCAACTTGACAAAGTTCGATTTCTTCAATCTTTCCAAAATTAGAAAAAATCGGTACCGAAGGCTCCGATTGAGAAGATAAAGTAAAATACTAGAACCGAGGTTAGGTTCAAAATGATTCGACTCCCCGGTGCGAACCCCAAGCGCACATAAAAATCCCGGGAGATTCGCACCTCTTGCGGGACAAGGGTTTTCGCGTTATTTTATAGAAGGAGCCCCGTTTTAAACAACCATTTTCAAGGGGTTCGCACTAAAGCGTTTGCAATTCCTTGCGTAGCAAGTGGTCGCAGCGGCTGCT # Right flank : TTGCGGCACCCAGTTTCACTGGCAATCTGACGGCCTAGTTTCGGCGCTTTATTAGCCTGAGGGAAGCTTACTCTTTGGGGCGCACCTCAAACAATTCGTTGGGACTGATATCGAAGTATAAACATAACTTCACGATCAGCGCTGCCGAGATTTTTTTCTTTTCCATATTGGTGTTATGCATCAATTCCATAATGGTTGTTCTACGGTGGCCTATCTCTTTAGACAATTTCAAAACGGACATATTATCGTGCTCTTTTAAAATCTCGTCCAATTTGCAATGGAGTGTATATCTGTTATATTCCATTTCGTCCTCCGAATTTAAGGTATTGCACTTCAAAAGTGCATATGGTATATTGTGGATACAAGGGTTGAACTTTAAAAGTGCAATCGTATTAAGAAAATCCATTTGCGGTTAGGTTGCCTTTTATAGATACCTATCTTTTAAAAAATTCAGTGGAGGATGCATATGCCCAAGCGTCGCCCCCGCAAGCTTAACTATC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCATGCGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 3 602581-604297 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011114.1 Paenibacillus durus ATCC 35681 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================================================================================================================================================================= ================== 602581 31 100.0 38 ............................... TATCGAAAGTATCAAATGTGCCGGTCTCTTCGCCCTCG 602650 31 100.0 38 ............................... ACTTGTTCGTCCTCCTTTTTTTGAAGCGCAGAATACAG 602719 31 100.0 36 ............................... GTTTGATTCGTCATCACTTATCCCTCCCGCGTATGG 602786 31 100.0 36 ............................... CAGCAACAGCGCTGATGTTTCCTGGTGTGAGATACG 602853 31 100.0 37 ............................... TTACGCTTAAACGGCCACATCCGTAATCACCTCCGCG 602921 31 100.0 34 ............................... AGGCGGCCATTAAGATGACGAATGACCAGCTTGG 602986 31 100.0 36 ............................... CATACCGCCTTGCCGCTTGCGTAGAACGTGTGTACG 603053 31 100.0 36 ............................... CATTCTGCAAATCTATCCCACCTTAATAGGCACGGG 603120 31 100.0 39 ............................... AGACCATTGCTAACGTGGACAGCCAGAGACGTATTCGAG 603190 31 100.0 35 ............................... AATGCTTTGAAGACACTGTCCAAAATCTTTTGTTG 603256 31 100.0 36 ............................... CTCAGACCAGTCTGCAAATTTTACGATGTTTTTCCG 603323 31 100.0 35 ............................... CGAACTCAAAGACGTTGCTGGAAAGGTTGTTAATG 603389 31 100.0 37 ............................... TTCGGTGCGGCGGATGTTACGGGCCAACATGAGGCCG 603457 31 100.0 37 ............................... CGAATCAACAAAGGCAATCGATACAAATGGGGATTGG 603525 31 96.8 34 ............C.................. TTCTATATAAATTAACATGTCCGTATCATATTAG 603590 31 96.8 34 ............C.................. CATAAATTCACATTAAAGTAAGTGATTTTTGTCG 603655 31 96.8 36 ............C.................. CATTCATGGTACAGGGCTTCTTGCAGCGTTTCGTAG 603722 31 87.1 37 ....A....G..C...T.............. AGCAATCCGACACTGGGCTAATCACTAAAACTTAGGG 603790 31 90.3 177 ....A....G..C.................. GTTAATGACACACCTTTGATTGCCCTCAATTCCGTCAAGTCGCTCTTGCTGCCCTGGGGGTAATTGCTAGTGCGAACCCCAAGCTCCCATAAAAATCCCGGGAGATTCGCACCTCTTGCGGGACAAGGGTTTTCGCGTTTGCAATCCCTTGCGTAGCAAGGGGTGGCAGCCGGTCTG 603998 31 90.3 38 ......T.....C.A................ TGAACTGCAATCCCAATAACACAACCATCCAAGAGTCG 604067 31 90.3 36 ......T.....C.A................ ATCGGCTGTGACGGCATTCGCTTGGATATGATTACG 604134 31 90.3 36 ......T.....C.A................ TTCGAGACCAATAACGTCATATTCTTGTCCTTGATG 604201 31 90.3 35 ......T.....C.A................ TTTTTGGCTGGCCAGAAGGCAACCTCTGACGCGTG 604267 31 90.3 0 ......T.....C.A................ | ========== ====== ====== ====== =============================== ================================================================================================================================================================================= ================== 24 31 96.6 42 TCGCTCCCCATGTGGGAGCGTGGATTGAAAT # Left flank : ATAAAATTGTTAATGTGAATCATTTCAGTGTCTTTAAGCTTTTGTATGAATTGAAAAATGAATACCTTGTACATGAACCGATGTCTCAGTAATCTTTTAAATCAATGTACAGTGTAAATCCAATTGAGGCACTTTCTCATTTTTTTCTTGAAAATGTGGATACTCTAGACTATTGGGAATGGAAACAGGCTGGCGGACCGCCGAACTGGCGATCTTTTATAGGAAAACAAATCCGGATCTCAGCCTGATTGAAGTCATAGAAAAAGCGGAAAGGTCCCGGGCAAAACAGTAGCTAAACATGTTGCTGCCCTGGTCTGTAAGCTTATGTTTGGTGCGAACCTCAAGCTCACATAAAAATCCCGGGAGATTCGCACCTCTTGCGGGACAAGGGTTTTCGCGTTATTTTATAGAAGGAGCCTCTTTTTAAACGGTCATTTTTAAGAGATTCGCACTAAAGCGTTTGCAATCCCTTGCGTAGCAAGCGGTCGCAGCGGGTGCTG # Right flank : TGATAAGAAAGAGTATGAACGATTGAAAGTGGAAGTTGCTCCCCATGTAGGAGCATTTTGCTCGGCTGATCTATAAAAACGACGACTCCTTTTTTTACAAAGAACATTATTCATAGGTTGACGAGTATGAAAATAACTGGAAATCGAAGTTCCGAAGCGATAAGATAGAAGTGCTGGAATTGTACATCAAATTGGAAAATCAATGAATTGGGGGCGTCTAACGATGAAAATTGCGGTTGCGGGCGATCATGCGGGTTTTTCCTTGAAAGAAGAAGTAAAAGCTTTACTAACCAGCCAAGGGCATGAGGTAGTGGATTTCGGAACGCATAGTGAGGAAGCTTCCGATTTGCCTGATTATATTTATCCTGCGGCTTTGGCAGTGGCTGAAGGGAAGGCGGACCGCGGGATTTTTATTGATGGTGTAGGCTATGGAAGCGCTATGATTGCTAATAAAATCTATGGGGTGTACGCGGCGGTCTGTCAGGACCCGTTCTGTGCGG # Questionable array : NO Score: 8.48 # Score Detail : 1:0, 2:3, 3:3, 4:0.83, 5:0, 6:0.25, 7:-0.58, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCTCCCCATGTGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.50,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 605813-606043 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011114.1 Paenibacillus durus ATCC 35681 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 605813 32 100.0 34 ................................ GCCGCATTATTAGAGGCGGGACGCTCATGCCGCA 605879 32 100.0 35 ................................ TAGTCAAACATCGTGGAAAGTCCCCATAGAACTGG 605946 32 100.0 34 ................................ ACCGAACCGCGTCTTGCCCGTCAGCAACCATCTC 606012 32 90.6 0 ..........A.A............C...... | ========== ====== ====== ====== ================================ =================================== ================== 4 32 97.7 35 GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAT # Left flank : CGATTCATGACTCGTCCTCCTGCAATAATGTCTGCAAAATCTCCCATCTTTCCTCATTAAGCATGGCATATTCTTTAAGCGACCGCATAAAAAGCTGTTGCCGTTTTAGCGGCTCGGCGTCACGCAGCAGTATCCCGATTCCGATAATTTGAGCGCGAAAGACAGGACTGTTGATAATATTTATTTTGAAAAAGATGGCAGTAACAATCCGCCTCAAGTATTCCGCTTTCTGAGGATAAGCTGGATAGGCTAGAAGCCAAGGGGGAGAGTATTAAGACAATAAACAGGTTTTTCTTGTCAGATCTTCTCGATTGTCTCTCGCTAATCAAAAAGTGCGAACCTGAAGCGAACATGAAAACCCCGGGAGGTTCACACCCCTTGCGGGACAAGGATTTTTGCGATATTTTGTAGTTGAAGAGTTATGAAGTGGACTGTTTTTACAGAGGTTCGCACTTTTTGGGCTTCAAACCCTTGCGGCGCAAGTGTTCTGTGGGCTACCT # Right flank : TACAAGCAAGCGGTACGCTACCAAACGGCGTAGTAGTCACTCCCTACCGGGAATGTGAAAGGAGGTTCACTGAATGGATAAACTAACTCTAACTGAAGCGCAACTACGAGAGATTGTCGACAGCTACGATATGCAGCATGAGGGGATCGATTCTTTTTTCAATCTGGAGAGCAAGGAGGTTGTCTTCGTCAATAATGAATTTTCTGATCCGGAGGACGAGGAATTGGAAGAGGAGATTGAAGAGGGGTTTGGCGAAATCTGGTTCCGCTTGCCAGAACGGTATTCCAGCGACGGGTACCGGGATATGGAGGATTTTGTAGATATTGTATCGGACGAACGACTGAGAGAGCTGTTGATAACGTCCCTTAGAGGGGGACGCGGGTTTTTTCGCCGTTTTAAAGATACGCTGGGCGACAACCCTGAAGAACTTGAACGTTACTATCAGTTTGTGTATGAACGCAACCGCGAACGGGTACTAAAGTGGATGGAAGCAGAGTTTG # Questionable array : NO Score: 8.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 614690-615734 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011114.1 Paenibacillus durus ATCC 35681 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 614690 32 100.0 34 ................................ CATCTATCTCACCGCCTGTATTCTGAATGATGGA 614756 32 100.0 35 ................................ CGCGAGATACCGCTCGCTCCCACCGTTTTCCAGAA 614823 32 100.0 36 ................................ GAAGCATCCATGTGGATTACTTGGGCGACGTAGACA 614891 32 100.0 34 ................................ TGTCTGTAGCGCGTTGTCCACGGCGATAGATCCG 614957 32 100.0 35 ................................ TGAGCATATAAATGGACTCTGCCGGGAGTAGACAT 615024 32 100.0 34 ................................ AATTAAGGAGCAAATACATATGAAAACTAAAACA 615090 32 100.0 36 ................................ CGCGATCCATGTTACTTGCACGCCACCATACACACC 615158 32 100.0 35 ................................ CGGAACAACCCCATCTGGCGGTATGATTCCGCAGG 615225 32 100.0 36 ................................ CCCTCGGCACAGTAATTTTTTATTGTTCCAGGTGTC 615293 32 100.0 35 ................................ TGGAAAACCATGACATAATTATTGTCCTCCTTTGT 615360 32 93.8 37 .........C..G................... GATAAGGAAACAAGTGACACGTTCACGAAAGCCATGC 615429 32 93.8 36 .........C..G................... CGCCGCCTCACTGTTACGTGCGGCGAGTGCTTCCTG 615497 32 93.8 37 .........C..G................... TCCGGAGCCACATCGCCGATAATCCGCAGCTCCGGCG 615566 32 90.6 38 .........C.AG................... CACTGCTCCCCCATGAGGCGCACCTGGTTGGCCCAACT 615636 32 93.8 35 .........C..G................... GGTTTCGTGGTAGTAAGTTTAGATGGTTATAAAAA 615703 32 68.8 0 ......TT.CG.G..A..A.TC.........C | ========== ====== ====== ====== ================================ ====================================== ================== 16 32 95.9 36 GTCGCTCCCTATACGGGAGCGTGGATTGAAAT # Left flank : AAATCGCAAAGGTCACGATTTTCGCTGGCGAAGCCATCGGTCGCTCCCCGTGCGGGAGCGTGGATTGAAATTCGACAGGTATGGCTGCAATGTGTAAAAAATCATGGTACGTATTCAACGTATCCAGATTAATTAGCGGAAAGGTTTCACTCTCCGTACAGGAGACAAAGTTTCCTCTCAGTTATAAAATATATCCTACCTTGGGGCTTAAGTCTTTCACAGAGACAAGAGAGATCTGAAAACTTAATATGTAAAGCACCGAGAGCTTCGCTTTTACAGCAGAGTTTTGTGCTTTTTTAGCCTACTAAAGGAGACCTTACTCTTTTAGTCTGGTGCGAACCCCAAGCTCCCATAAAAATCCCGGGAGATTCGCACCTCTTGCGGGACAAGGGTTTTCGCGTTATTTTATATTAGGATCCCCATTTTAAACGGTCATTTTTAAGAGGTTCGCACTAAAGCGTTTGCAATCTCTTGTGTAGCAAGTGATCGTAGCGAGTGCG # Right flank : CAATACCGCCTGGGCTTTATGGCTTTTTTGTTATTCATTGCTTGCTTTGCCGGAGTAGGGATTCAAATCGGACTTACCAGAAGCAGTGGAATGGTCATACTGCTCCCTTTGGTCAGTACGATCCTCCAATAAGATTTTCTACTAAATGCTTTACTCCAGTGCCTACTGGAGTATTTTTTTTGTTGAATTTTTACATAAAAAGAGGAATTAGGCCTAGTTCTGGAGAAGTATATCTGTGAATTTTAGGGTGATATTGGATATTTTGTTGAAACAAGGAGGATAGCATGGTAAGGGCTAAAGTTCTTGAATCAAGTAAGATTTGAGCAGTGGGTTCAGGCATCTGGAACAGAATTAATAACATATACAGGGAACATTGAGTGATATTGAAGATTTTTATAAAGGAATCGGCTCTTATTCACTTGAATTTCATGTACATTTCCAAAAGTGGTAAGGAGGAACTATGGAATATATTGCCCATATCCGCCAAAAGGATAAAAAAA # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTATACGGGAGCGTGGATTGAAAT # Alternate repeat : GTCGCTCCCCATGCGGGAGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 624951-626849 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011114.1 Paenibacillus durus ATCC 35681 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 624951 31 100.0 35 ............................... ATCCTCGACTTGTTGGTTTTTTACATTTTTTTGAG 625017 31 100.0 37 ............................... AAGGAAGAGTTGGAACTCCGGGCAAGGGCGCTGGCTG 625085 31 100.0 35 ............................... CATTTCTGCTTTTGCCGCTTCGCGTACCAGCCTGG 625151 31 100.0 35 ............................... ACTAGATAAAGCGGATAGGAACGGATCAGCTCAAG 625217 31 100.0 33 ............................... CTGCTGGTACTTCTTGACGCCTTCCGGGTATTG 625281 31 100.0 34 ............................... TATTACAATGACATCCTTGTAAATGTTATTTTCG 625346 31 100.0 35 ............................... TGTAGTAGTCGGCAGGTTGCAGAGGAATTCGAAAG 625412 31 100.0 34 ............................... ATGCCTGACCGCTTCCCGATAGCGTAGATTATAG 625477 31 100.0 35 ............................... ATATCCTCCTTTTGCTTGTGATAAGGTTTTCTTTG 625543 31 100.0 36 ............................... CCGATAGCGTAGATTATATAAATCAAGAGCGCGTCG 625610 31 100.0 35 ............................... CAGCATCGATGTTCGCCCGTGCTCTCTGGAGTGCG 625676 31 100.0 34 ............................... TCATTATTACTGTACGCTGGTCATCACTAAGCAG 625741 31 100.0 36 ............................... TGCGTCTGTGAGGATGGATAAGGATTCGGCGTTGTG 625808 31 100.0 34 ............................... GCGGAAAGTATCCTCCACCGGACTTTACGATTAG 625873 31 100.0 38 ............................... CCGTATGAGACGATATGATCTGGCGTGATCGTTCCTCG 625942 31 100.0 38 ............................... CTCGATGTTATAGGACTTTCCGGGAAATTCCGGGAATG 626011 31 100.0 36 ............................... TAGACGATCAGGAGTGGGAGCTGATATTCCGGGCGG 626078 31 100.0 34 ............................... TTTAATCTCGCTCTACCTTATGTAGACAAGCGAG 626143 31 100.0 38 ............................... CACACTCGGCAGTCCCGAGTATCTAAGGAAATGTCTAG 626212 31 100.0 36 ............................... CAAAATGTCTTGCACAGAAACGCCCAAGTACCCACG 626279 31 100.0 37 ............................... ATTCAAAACACTCAGCGGATCGCCGTCTGAGGTGTAG 626347 31 100.0 38 ............................... GTTGAAGATGTACGCCAGCAGAGCCGCTTCGCCATTGG 626416 31 100.0 35 ............................... GCCCGGCGTCAAGCCTCTGCGCGCTGGACAACTTG 626482 31 100.0 35 ............................... TCCCTGAACCGATGAAGGGTTATATACCGGCTGAG 626548 31 96.8 35 ............T.................. AGTACCGGGATGAAATATAAACTGTCCCGGCTGAG 626614 31 96.8 38 ............T.................. CCCGTAATGATCGACAATGTAGGACAGCAATTGTACGG 626683 31 96.8 38 ............T.................. CAGAGCCGCCGACAAAGGAGGAAATAAAAGATGATACG 626752 31 96.8 36 ....T.......................... TTATACTGTACCAGATCAACCAAACACTCAAACACG 626819 31 96.8 0 ............T.................. | ========== ====== ====== ====== =============================== ====================================== ================== 29 31 99.4 36 TCGCACCCCATGCGGGTGCGTGGATTGAAAT # Left flank : ATTTTTGTGGAAGTAGGTGTTTTCAGGTGCTGGTCTTGATTACGTATGATGTAAGTACAAAAAGCGCGGAGGGCAGAAGACGTCTGTCACAAGTCGCCAAGAAGTGTCTGGATTACGGTCAGAGGGTCCAAAACTCCGTATTCGAATGTATTGTGGATACGACGCAGTTCCGCCGGCTAAAGTTTGAACTGGAAGAACTGATCGACGAAGAGACAGATAGTCTGCGTTTCTATAACTTGGGAGACAAGTATAAAACCAAAGTCGAACACATCGGTGTAAAAAGCTCATATGACATGGAAAGCCCGCTGATCATTTAAGGTGCGAATGCCAAGCTCCCATGATTTCCCCGGGTCCTTCGCACCTCAAATTTTGTCGAAAAGTAGAAGAATAACGGTTTATTGAAAAAAGTCAATTCTGGATTTATACTTCTTTTGCAACGTTTTTGGCGGAAATTGAAGGAATTGATGTCTTTCTCAGATCAATCTTAATCATTTTCGCCG # Right flank : TTCGTAAAACCTAGCCGTATTATGCTCTTACTGAGTACCACCCCCGCACGGGTGCACAAATCGTAACTAATAACCAAACCTTATAACAAGATGACGCCCCCTTTTTTTATAAACGCAAACTGAAATTCATTTTCTATACGTTAATGTATAAAAACAAACCGACTCACTACCACGGCATGGAAGCAAAAAGTAAGCGTTCACAACTTTGTAACGAGGCTTGAAGATTTTTGATGGAATTTGGATAATAATGATTGTTTTTTGCTCGATTTATGTTACTATATGGTCAGTTGGAGGAATGAAGATGCTGACTGAAGAACGCCACGGAATGATAATACAGCGCTTACAAGAAAAGGGCGTCGTCAAAATGCAGGAGCTGACGGAAATGCTCGGGGCTTCGGAATCGACGGTACGACGGGATTTAATTGATCTTGAGAGCCGTAATTTGCTGAAAAGGGTACATGGCGGAGCTTCGCTGCTGCCTCATAAAAGCCAGGAGCTCG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCATGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.00,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //