Array 1 348275-348758 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIYQ010000001.1 Listeria seeligeri strain LS46 Scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 348275 29 100.0 36 ............................. TCAAAATGAATTCAGGAAAAAACATGGTTGAATATT 348340 29 100.0 36 ............................. AATCCCATATCTAGTTGTTGTAAAGCATCTAGACTG 348405 29 100.0 35 ............................. AGTGGTATATTTATCGTAAACGGCTTTGGGTTTTA 348469 29 100.0 36 ............................. TTTTTTATTGGTATTTTGCTAGTTTCGCCGCAAAAG 348534 29 100.0 36 ............................. AAATAATTCGCGCTAATGGATAGGTTTTTTGCAATC 348599 29 100.0 36 ............................. TGACACAGAGGGGGAATTTGAAGGACATGATATTAC 348664 29 100.0 37 ............................. GATGCTGCAGCGTATATAATTTAATTGAGCTAATTTT 348730 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 99.6 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGTTTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : TGTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGCGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGGGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATCTCTTGTTTTTAAGCGGAGGACATGACTGGGATAGAGTAAGTTCTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 375648-372514 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIYQ010000001.1 Listeria seeligeri strain LS46 Scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 375647 36 97.2 30 ..C................................. CAGTTAGTACGATTTGGTGCTCTGATGGTA 375581 36 100.0 29 .................................... ACAAAGCCGCGAAATTAGAAACGCAACTT 375516 36 100.0 30 .................................... TACCTGTCGATTTTTCTTCTGAAATGCAAG 375450 36 100.0 30 .................................... CAACGCTCGTATATTCTTTGTAATCCATTG 375384 36 100.0 30 .................................... TGTACGCTGAACAACTGAAGTGAAACGTAA 375318 36 100.0 30 .................................... CAGCCACAAATTGCGGAATAATTGGCAAAG 375252 36 100.0 30 .................................... AGTTTTCCGCACAAAGCCCGACTTATTTTT 375186 36 100.0 30 .................................... TCACTTTGGATGATTTAGATGAATCCTTAT 375120 36 100.0 30 .................................... CTTGGCGTTCTTCGGAAACAACTGCGTTTG 375054 36 100.0 29 .................................... ATATTGGTACAATTAACGCGGCTAAAAAT 374989 36 100.0 30 .................................... TAGTAGCTTCGTTTACCAGCTCGGGTATAA 374923 36 100.0 30 .................................... TGGGTTTTAATGCTTGGATAAAAAAGGAGC 374857 36 100.0 30 .................................... CCGGGTCCGGAACCTCTCCAATGGCGTTTT 374791 36 100.0 30 .................................... CTTCTCAGGAATCTTTTGAACAAATCGACA 374725 36 100.0 30 .................................... AGTCGGTATCTCGTTATGTCATGCCGTTTT 374659 36 100.0 30 .................................... ATAAATTATACGGTAAAGCTCATCCCGGTG 374593 36 100.0 30 .................................... ACAATCCATCTAGTGCTTCCGGTTTCTTCA 374527 36 100.0 31 .................................... GTATTTGATGACTATGGTACATTACAACGTA 374460 36 100.0 30 .................................... CACGAATCGGTGACGAAGAGACTCTTAAAG 374394 36 100.0 30 .................................... TGTCATTAGCGGTTTCATGTGCTACTACAA 374328 36 100.0 30 .................................... ACATGGAAAATGAATCTGATGCAGAAAAAG 374262 36 100.0 29 .................................... AAAACGCACTTGATTATTGCTATATCATG 374197 36 100.0 30 .................................... AACGGCGTAACAGCCACATCGAATTTATCA 374131 36 100.0 30 .................................... AGGGATAAGTGATTCATAACCCCAATTTCT 374065 36 100.0 30 .................................... TGCTAGCTAATCCGGCAATTTCCTCTCGAA 373999 36 100.0 30 .................................... AACAATTACGTAAAGACTTTGGCGAGGATA 373933 36 100.0 30 .................................... CCAGGGGTCACTATAATGCTCGCGTTGATT 373867 36 100.0 30 .................................... TTAAATCCTTGATTAACGTTACTACTTCCT 373801 36 100.0 30 .................................... CGGATAGTAAGGTTCTATATCGAACAACGA 373735 36 100.0 29 .................................... CTATGGGTATATTATTGCATAAACTATTT 373670 36 100.0 30 .................................... GCCCTACAAGATGATAAGATCGCATTGTTT 373604 36 100.0 30 .................................... CACCTTCATGGCTGTTTCATTATCTACAAT 373538 36 100.0 30 .................................... AAGTCTACAAGCCATCTATGAAGGACTTAG 373472 36 100.0 30 .................................... TGATTGAATCAGTTAGTAATCATAAACCGG 373406 36 100.0 30 .................................... CTTCTGCACGAGCGACATTTGTTTTTTCGA 373340 36 100.0 30 .................................... CAGGTCGAACCGAATACGGTATAAAACAGG 373274 36 100.0 30 .................................... CTGGTTCGTCGGGCAATGCCGTGCGAATAA 373208 36 100.0 30 .................................... ACCGAAAGGACATCAATTACCACCGCACTG 373142 36 100.0 30 .................................... CACGGACGGACCATATACGTTGCTTTATTA 373076 36 100.0 30 .................................... TAGCAGCTTCGTTTACCAGCTCGGGTATAA 373010 36 100.0 30 .................................... AACCTGTATTATAAGGCGGGTCAATGTAAA 372944 36 100.0 30 .................................... CAGCGTCGCGGTCCATAACTGGTGGTTCTG 372878 36 100.0 30 .................................... TATGACCAGCCTTTTAATAGCGCCAAGAGC 372812 36 100.0 30 .................................... AGCTAACGTTAGCGAATTTATGTCGCTCTG 372746 36 100.0 30 .................................... TGTCTTGTCTATTTAAATCAGGATTTTCGA 372680 36 100.0 30 .................................... GTTATGGTTCAGATAACGGCACACAATCTA 372614 36 100.0 29 .................................... ACCACCGACACTATAAGCCCCTCCAAATT 372549 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 48 36 99.9 30 ATTTCCTAATACCAAAACTTGAGAGAGTACCAAAAT # Left flank : TATTCCCATTTTTCCGTTTTCTATTTCTTCAGTTAGCTAATTTTGAAAAAATATTATATCTGACTCAATTACTACGTTCATTATAGTTATAGAGCTTCAACCTTGCAAGCGGTTACAAGTATTTCGAAAACGGTTTTCGCTGGACGAAAAAAAGGGATATGAGATGAATTAATGAAAAGATGCAGTTCTTTAGATGGAAATACCCCTAGAAATGGTTGTTGACTCTAGGGGTATCTCTTTATTAATTCGTTTTCGGAGCAGCTATTTTTTTATTGTTCAACTACTTTTTAATTTATATTCTAATTTTTCATCAGATAGATTTGTGTAGATAATTAGATTTTGACCGCGTTTTTCCAGAAAATATTGCAGGTCTTCATCACACTCCTACTTGCCAACTTTTTCAAATAGAGACCCGGTAATGGTTTCAACTCGTCATCGAAATAAAAATACATTTACATATTTTCATCAGTCACCTAACATCATTTTTGTTAAGTGTTGAA # Right flank : GTCTTTTCCATTATACCTCAACCTAAATCAACCTATCAAGGTAAACAATAATATTTGCGGGAATTCCTTTGTAGTCAATGATAATTCGCCATTCATTATAAATGAAAATAAAATAAACTAATACAAATACAACTAAGTTATCCACAGCTTCCAACTTTAATTCGACCGTTTTCCCACCATAGTTATCCACAGCTAACATAGACCAATTTATTGCTTTTATCCAATCCGATTCTTCTACGATTAAAGGTATCTTTGCAATAATTTGTTCTTTTTTAACCATAATTTGTAATTCATTAACAATATCACTAAAATAAAAATGGTTAATTGCACCATCCATCCAAATATGCTCAGAAATGATAAATACATTGATTCCTCTTGTTAACATTTTTTCAACATGTAATTGAAATTTCTTTATTCCCGCTTCTGAAATTATAGTTTTTTCTGGTATTTCTATAAAAAATAAAACTTGCTTATTAAATAATTCTTTTGCATACAGATTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCTAATACCAAAACTTGAGAGAGTACCAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //