Array 1 3031122-3029218 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038849.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014866 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3031121 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 3031060 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3030999 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3030938 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 3030877 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 3030816 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 3030755 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3030693 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3030632 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 3030571 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3030510 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3030449 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3030388 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3030327 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3030266 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3030205 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3030144 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3030083 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3030022 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3029961 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3029899 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3029796 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3029735 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3029674 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3029613 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 3029552 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 3029491 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3029430 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3029369 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3029308 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3029247 29 96.6 0 A............................ | A [3029220] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3048746-3047253 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038849.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014866 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3048745 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3048684 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3048623 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3048562 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 3048501 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 3048440 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3048379 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3048318 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3048257 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3048196 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3048135 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3048074 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3048013 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3047952 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3047891 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3047830 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3047768 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3047707 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3047646 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3047585 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3047524 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3047463 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3047402 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3047341 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3047280 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //