Array 1 2760-1512 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDLR01000135.1 Salmonella enterica subsp. enterica serovar Anatum strain 234 NODE_135_length_8068_cov_1.96726, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2759 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 2698 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 2637 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 2576 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 2515 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 2454 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 2393 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 2332 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 2271 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 2210 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 2149 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 2088 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 2027 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 1966 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 1905 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 1844 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 1783 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 1722 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 1661 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 1600 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 1539 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 97-614 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDLR01000054.1 Salmonella enterica subsp. enterica serovar Anatum strain 234 NODE_54_length_29546_cov_1.6386, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 97 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 158 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 219 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 280 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 341 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 402 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 463 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 524 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 585 29 93.1 0 ............TC............... | A [612] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGTG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //