Array 1 4-188 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNIN01000041.1 Mycobacterium tuberculosis strain Bir 270, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 100.0 36 ..................................... CAGCGTTCGACACCCGCTCTAGTTGACTTCCGGGTC 77 37 97.3 38 ..................................A.. TGAGCAACGGCGGCGGCAACCTGGCGGCCACGGGTCTG 152 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 3 37 99.1 38 GTCAGACCCAAAACCCCGAGAGGGGACGGAAACCGGG # Left flank : GTCG # Right flank : GCAGCGTTCGACACCCGCTCTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACATGCGAATCCGCTGTCAGCACATGGGATTCCGAGTGTTCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTCAAAAACGGGGACGGCATGCTGCATGCCCTAACGTCGTGTTCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCTAGGCGGCCCCGGCGAGGCTGGGGGCGGTTTCACGCGTTCGTCCCCTCTCGGGGTTTTGGGTCTGACGACAGGCTGAAATTGAAGCCGGAAATGACGACGCATTGGTGTTCGTCCCCTCTCGGGGTTTTGGGTCTGACGA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGACCCAAAACCCCGAGAGGGGACGGAAACCGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 1404-440 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNIN01000041.1 Mycobacterium tuberculosis strain Bir 270, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ======================================== ================== 1403 34 100.0 38 .................................. TTAAAACCGTGTTGCACTGCAACCCGGAATTCTTGCAC 1331 34 100.0 36 .................................. TTTTTGCCTCATGCTTGGGCGACAGCTTTTGACCAA 1261 34 100.0 36 .................................. TTCGTCGACCATCATTGCCATTCCCTCTCCCCACGT 1191 34 100.0 39 .................................. ACATCCCACGCGTTACCGCCTTCCAGTGATCGCCTTCTA 1118 34 100.0 35 .................................. ATGTGCGCCGTCGCCGTAAGTGCCCCACGGCCCGT 1049 34 100.0 37 .................................. TCGCGGCGCGGCAGTGCCATCAGTCAGCGTCCTCCTC 978 34 100.0 37 .................................. TTGGAGCGTGTCACCGCAGACGGCACGATTGAGACAA 907 34 100.0 38 .................................. TTGAACACGGAGCCGTGCACATGCCGTGGCTCAGGGGT 835 34 100.0 39 .................................. CCATATCGGGGACGGTACTCGGGGCTGCCGTCTGCGCTG 762 34 100.0 40 .................................. CCTCGCAGAAAAGGGCATCGATCATGAGAGTTGCGTTGAT 688 34 100.0 37 .................................. ACCAATGCGTCGTCATTTCCGGCTTCAATTTCAGCCT 617 34 100.0 37 .................................. GCGTGAAACCGCCCCCAGCCTCGCCGGGGCCGCCTAG 546 34 100.0 39 .................................. ACGACGTTAGGGCATGCAGCATGCCGTCCCCGTTTTTGA 473 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ======================================== ================== 14 34 100.0 38 GTCGTCAGACCCAAAACCCCGAGAGGGGACGAAC # Left flank : TTCAGTACGCCCTCGACTTGCAACTGCAAAGCCTCGTGCGTGTTATCGAAGCCGGGCACCCGTCGCGGCTCGTCGATATCGATATCACCTCCGAGCCATCCGGAGCCTAAATGCCCACTCGCAGCCGTGAGGAGTACTTCAATCTCCCGCTCAAAGTGGACGAGTCCAGCGGCACTATAGGCAAGATGTTCGTCCTCGTAATATACGACATCAGCGACAACCGGCGGCGGGCTTCACTTGCGAAGATCCTGGCCGGGTTTGGCTATCGCGTCCAAGAGTCCGCATTCGAAGCGATGCTGACGAAGGGCCAGCTCGCGAAACTAGTTGCACGTATCGACCGCTTCGCCATCGACTGCGACAACATCCGGATCTATAAGATAAGAGGTGTTGCGGCAGTTACGTTCTACGGAAGGGGACGGCTTGTCAGCGCAGAGGAGTTTGTGTTCTTTTGACATCATCAGCAGGCATTGTTACCACACGCTGGACGAATTGTCCATAGA # Right flank : CACTCGGAATCCCATGTGCTGACAGCGGATTCGCATGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTAGAGCGGGTGTCGAACGCTGCCCGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACCAGACCCGTGGCCGCCAGGTTGCCGCCGCCGTTGCTCACCTGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCCGGAAGTCAACTAGAGCGGGTGTCGAACGCTGCCCGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 1-189 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNIN01000022.1 Mycobacterium tuberculosis strain Bir 270, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 1 38 100.0 37 ...................................... TCAGCTCAGCATCGCTGATGCGGTCCAGCTCGTCCGT 76 38 100.0 38 ...................................... AACCTCACCGCCTGCTGGGTGAGACGTGCTCGCCGCGA 152 38 71.1 0 ...................T..ACC.CCC...C.TGT. | ========== ====== ====== ====== ====================================== ====================================== ================== 3 38 90.4 38 GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACCC # Left flank : | # Right flank : CCGGAGACTCCAGTTCTTGGAAAGGATGGGGTCATGTCAGGTGGTTCATCGAGGAGGTACCCGCCGGAGCTGCGTGAGCGGGCGGTGCGGATGGTCGCAGAGATCCGCGGTCAGCACGATTCGGAGTGGGCAGCGATCAGTGAGGTCGCCCGTCTACTTGGTGTTGGCTGCGCGGAGACGGTGCGTAAGTGGGTGCGCCAGGCGCAGGTCGATGCCGGCGCACGGCCCGGGACCACGACCGAAGAATCCGCTGAGCTGAAGCGCTTGCGGCGGGACAACGCCGAATTGCGAAGGTCGAACGCGATTTTAAAGACCGCGTCGGCTTTCTTCGCGGCCGAGCTCGACCGGCCAGCACGCTAATTACCCGGTTCATCGCCGATCATCAGGGCCACCGCGAGGGCCCCGATGGTTTGCGGTGGGGTGTCGAGTCGATCTGCACACAGCTGACCGAGCTGGGTGTGCCGATCGCCCCATCGACCTACTACGACCACATCAACCGG # Questionable array : NO Score: 4.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.52, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 1581-3471 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNIN01000022.1 Mycobacterium tuberculosis strain Bir 270, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ========================================== ================== 1581 34 100.0 38 .................................. CTTCAGCACCACCATCATCCGGCGCCTCAGCTCAGCAT 1653 34 100.0 37 .................................. TCGACACCGACATGACGGCGGTGCCGCACTTGACGCA 1724 34 100.0 37 .................................. TTGGAGCGTGTCACCGCAGACGGCACGATTGAGACAA 1795 34 100.0 37 .................................. ACCAATGCGTCGTCATTTCCGGCTTCAATTTCAGCCT 1866 34 100.0 36 .................................. TGCCCCGGCGTTTAGCGATCACAACACCAACTAATG 1936 34 100.0 38 .................................. CCTTCGACGCCGGATTCGTGATCTCTTCCCGCGGATAG 2008 34 100.0 38 .................................. TCAATAACACTTTTTTTGAGCGTGGCGCGGTTGAGAGT 2080 34 100.0 41 .................................. CTGCATCCGGAAAGTCCGTACGCTCGAAACGCTTCCAACGT 2155 34 100.0 38 .................................. GCGGATGGTGGGCAAGTTGGCGCTGGGGTCTGAGTCAA 2227 34 100.0 41 .................................. TCCACATCGATTTCCTTGACCTCGCCAGGAGAGAAGATCAC 2302 34 94.1 41 .........................A.......A CTCGTCGACGATCGCGTCGATGTCGATGTCCCAATCGTCGA G [2332] 2378 34 100.0 38 .................................. ACGGAAACGCAGCACCAGCCTGACAATCTTATTCTCGC 2450 34 94.1 38 ...........T.....................A CATTTTGAGCGCGAACTCGTCCACAGTCCCCCTTTCAG G [2480] 2523 34 100.0 37 .................................. TTGGAGCGTGTCACCGCAGACGGCACGATTGAGACAA 2594 34 100.0 24 .................................. CTTGAATAACGCGCAGTGAATTTC Deletion [2652] 2652 34 94.1 41 .CG............................... CCGACGACGAGCAGCGGCATACAGAGCCACGGATACGCCAG A [2656] 2728 34 100.0 40 .................................. CCGACGATGGCCAGTAAATCGGCGTGGGTAACCGATCCGG 2802 34 100.0 38 .................................. TCGCGGGCTCTGGCCTAAGGGTGCTGACTTCGCCTGTA 2874 34 100.0 39 .................................. GCACACCAGCACCTCCCTTGACAATCCGGCAGATCAGAC 2947 34 100.0 36 .................................. TGGTAATTGCGTCACGGCGCGCCTGGCGGGCCGATT 3017 34 100.0 24 .................................. CTTGAATAACGCGCAGTGAATTTC Deletion [3075] 3075 34 94.1 38 .CG............................... TTGCATCCACTCGTCGCCGACACGGCGGACTTCCGCGA A [3079] 3148 34 100.0 35 .................................. CTGACGGCACGGAGCTTTCCGGCTTCTATCAGGTA 3217 34 100.0 37 .................................. TGGACGCAGAATCGCACCGGGTGCGGGAGGTGCAGCA 3288 34 94.1 42 ...............................G.A ACACACCGCCGATGACAGCTATGTCCGAGTGACATCCTCCCA 3364 34 94.1 39 ..................A..............A CTTGAACCGCCCTTCGCGCGGTGTTTCGGCCGTGCCCGA G [3394] 3438 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ========================================== ================== 27 34 98.7 37 GTCGTCAGACCCAAAACCCCGAGAGGGGACGAAC # Left flank : GGCCACCTCCATGGTCCTCGACGCGATCGAGCAAGCCATCTGGACCCGCCAACAAGAAGGCGTACTCGACCTGAAAGACGTTATCCACCATACGGATAGGGGATCTCAGTACACATCGATCCGGTTCAGCGAGCGGCTCGCCGAGGCAGGCATCCAACCGTCGGTCGGAGCGGTCGGAAGCTCCTATGACAATGCACTAGCCGAGACGATCAACGGCCTATACAAGACCGAGCTGATCAAACCCGGCAAGCCCTGGCGGTCCATCGAGGATGTCGAGTTGGCCACCGCGCGCTGGGTCGACTGGTTCAACCATCGCCGCCTCTACCAGTACTGCGGCGACGTCCCGCCGGTCGAACTCGAGGCTGCCTACTACGCTCAACGCCAGAGACCAGCCGCCGGCTGAGGTCTCAGATCAGAGAGTCTCCGGACTCACCGGGGCGGTTCACCCCGAGAGGGGACGGAAACTCGGGGAGCCGATCAGCGACCACCGCACCCTGTCA # Right flank : CTACGACGACTGGGTCGCCACCGCGTCTGTTGACCGGCATTCAGGATGAGCATGATGGCGGCGTTGACGGTGAGGACGTTTGGTCATGAAATGACCCCGCCGGGAGATGTCCGGCGGGGTCGGTGGTGTTCGGGGTGTCGGTGTGGTGTTCAGTCTGCCGTGACTTCGGCGATGGCGGTGCGGGTGGTGGATTCGTCGACGATGGCCTTGTCGGCGGCGAAGGCGGCGACGAGGGCTTGCAGGGCGAGGTTGTTGACCGCGCGGGGGTAGCCCCGGCTGGTCTGGTGGATCAACCCGATGGCGTCGTCGGAGAACAGGGCATCGTCGCGTCCGGCTAGCTTGAGGTGGTGGCGTAGGTAGCTGCCGGTGTTGGTGTCGGTCATGGGCGGCATGGCATATCGGAGTCCGATGCGCTGGTCAAGCGCGGCGAGCACGCCGAGTTTCATCCGCCGCCGCAGGGTGGGTTGGCCGATGAGCAGGCAGGCGAACGGGCTTGACGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //