Array 1 80506-81013 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLTF010000009.1 Pseudomonas aeruginosa strain 2021EL-00150 NODE_9_length_186997_cov_21.360818, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 80506 28 100.0 32 ............................ CCGCCTCGGCGCCCTGCTCTCCTCGTCTCAAC 80566 28 100.0 32 ............................ TCGTATTCCCCGCCGGCTACACTTTCCCATGC 80626 28 100.0 32 ............................ TTCCGGTCGATGAAGATCAAACCGTTCGGGCA 80686 28 100.0 32 ............................ CGTTCGTGCGCAAGCTGTGCCAGCAGCACGTG 80746 28 100.0 32 ............................ TCGTATCTTGCCGCCTTGGCCGAGGCGCCGAC 80806 28 100.0 32 ............................ ATATGCCTGGCGAGGTGGTTGCGCAGGCCGTC 80866 28 96.4 32 A........................... TCCGGCCCCACTCGGTCCGGACTGTGCAGCGC 80926 28 100.0 32 ............................ AGTCAAATACAGCCTGTAAGAGAACCCCCATT 80986 28 78.6 0 .C..........A....TG..C.G.... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 97.2 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACCGCTTCCCGCACAACGCCACGCTGTACCTCGACACCCAGGCGCCGCCCGGCCAGTTGTTCGAGAGCGCGAAAACGCGCCTGAAGTCGGCGATCAACGTCCTCGCCATGACCTGCCTGCTCGACGAGAACGAAGAACCCGGCGAAACCCTCGCTTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGAAGCGGCCCACCCACGCCAGTAGCGCCGTCCCAAGCGCGACGCCCCCGGCCTGGCCAGGGGCTTTGAGACGCGATCCCTTCGAGGCCCATTTGCGCGTAAACGGCGAGGCTCACCGCCCGTCCCGCCCATCGCGAAATGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGGCTTCTTACGCCCTTTAAAATCAATAACTTACCAAGACACGAAAAAAGAGGGTTGCAGACCAGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTA # Right flank : AGCCGGCTGCGTATCCCAGTGATGATGGGGGTTCCAGAGTCCACACACTGGAAGTTCCGCCTCGCCGACTTCATTGATTGCGCCCCACCGTGCCGATGATTTTGCCCCCGGCAGCGGCAAGGAGCGGCTACTCCGCTCGCCCCATCATCAATGAAAGTTAAAGAATCGTGCGGTCTCGTATCTACGACAGCAGTAGTCGAAGTGCAAAGGAAGTTGCGCCTTTCATCTCCATTACTTTCGCGCGAGATATATCGCGCATGAACGAATGCAAGGATTCGCACATGAGTGGAAAACCCGCCGCCCGCGCCACCGATCCCACGGCCTGCTCTCTGCCGGGTCACGACACCAGCCCCATCGTTCAAGGCTCTCCCGATGTCATTTTCGATGGCCTGCCCGCCGCACGACAAGGCGACGCCTCGGCATGCGGAAGCCCGATCGCCTCGGCCGTTTCATCGACGGTCTTCATCAACGGCCAGCCCGCCGCCACCCTGGGCAGTGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 12361-11792 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLTF010000014.1 Pseudomonas aeruginosa strain 2021EL-00150 NODE_14_length_156848_cov_20.500118, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12360 28 100.0 32 ............................ AGGGTCGCAAACGGACGGTTTCTGTAACTATC 12300 28 100.0 32 ............................ AGTCCGGACGCTGGGCGATTTTCCGGACTGGT 12240 28 100.0 32 ............................ TTGGCGAAAAATCGAAGGTACTGTTGCGTACG 12180 28 100.0 32 ............................ TCCGGTCATAGGGTAGGGGGAAGCTTTTCTCC 12120 28 100.0 32 ............................ TGCTGGCGAAGCTGGATCGACCGGTACTGACT 12060 28 100.0 32 ............................ CTGCTGATCGAGGCGGCCAAGCGCGCCGGCAG 12000 28 100.0 33 ............................ TGGATAAACCCGCAGTTGGCCACCTGCCGGAAT 11939 28 100.0 32 ............................ TAGCGATTAAGCCGGCTGGCCCTTGGGGGCAA 11879 28 100.0 32 ............................ ACGGGGAGCCGGCATGAAGCTGATCGACAACT 11819 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================= ================== 10 28 99.6 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCGCGCACTTGTTCGACAACGCGAAAGGGCGCTTGAGGTCGGCAATCAATGTCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTCTCGCCCTCGAACGGCGCGGTTGACCGACGTCCCGGCCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTAGGAGGCCTCGAAAAAAGAGGGTCTCTGGCAGGAAAGGCTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : TCGCGAGCGATATAGTCCCGTAGGGCGGATAACGCCACGGGCGTTATCCGCCGATGTCACGGAAAGCGGCGGATAACCGCAAGCGGTTATTCGCCCTACGGATCAGGACTTCGGAATGAACTCTTCTCTCAGGCTCATAGCGTCTCTCGTGGTCTCTCTCCGGCAACTCCGCACACCTGTCAGCCACGTCTCCGGTCCGTACAGACGCTTGCAAAAGGGACTGGCCTGGGAGGGCGAAACGAGAAGCCGAGGCAGGCAAGGAAATCAGCTTGCCCAGCACATTCAGACTCAAGACCACGAGGGCAGAAAACTGCCAGCCTCAGGCCGGCAACAACGGCCGACAGGCTTCGACGAAGCGCCGGCAGGCACCCGCACATTCGCGCTCCAGCGGCTCGTCGCCATCGCAACGCTCCGCGCATGCCAGGGCATAGCGCGCCGCCAGCTCGCAGGCGGCCGGCGCCCATGGGCTGCGGCGCTCCAGCAGCAGGGCAGCGAGGCGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 29412-28784 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLTF010000037.1 Pseudomonas aeruginosa strain 2021EL-00150 NODE_37_length_59105_cov_23.074926, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 29411 28 100.0 32 ............................ GAGGCACTCCCTGCGCCCGACTTCGTCTGCAA 29351 28 100.0 32 ............................ GCTTGTGTCGAGCAGTCTCGACAAGTCATGAG 29291 28 100.0 32 ............................ GTCATCATCAGGCGGTAGCGCGTTGTCCCAGC 29231 28 100.0 32 ............................ AGCAAAGCCGTAGACCGTGAACTCCGGCCCGA 29171 28 100.0 32 ............................ GCCTGCTTTGACTGCATGCGCTCATGCATGGC 29111 28 100.0 32 ............................ AGCCACAACGGCGAGGCACCAAGAAGGATCGA 29051 28 100.0 32 ............................ GTCACCAGTTCCAGAACATCGGGCGCGTATCG 28991 28 100.0 32 ............................ GGTAAGCCGGGTCCGTGACTTGCTGCCCAAGG 28931 28 100.0 32 ............................ ATCAGATGCATAGAACCGCTCAAGAGCCGTCG 28871 28 100.0 31 ............................ CGGTCCCTTGCTCGCGCCGACCAAGCGCCCC 28812 28 82.1 0 ......................G.CTTC | C [28787] ========== ====== ====== ====== ============================ ================================ ================== 11 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CCGCTTCCCGCACAACGCCACGCTGTACCTCGACACCCAGGCGCCACCCGGCCAGTTGTTCGAAAGTGCGAAAACGCGCCTGAAGTCGGCGATCAACGTCCTCGCCATGACCTGCCTGCTCGACGAGAACGAAGAACCCGGCGAAACCCTCGCCTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGAAGCGGCCCACCCACGCCAGTAGCGCACATCCCAGGCGCGACGCCCCCGGCTTGGCCGGGGGCTTTGAGACGCGATCCCTTCGAGGCCCATTCGCGCGCGAACGGCGAAGCTCACCGCCCGTCCCGCTCATCACGAAATAGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGGTTTCTTACGCCCTTGAAAATCAAAGACTTACAAAGCCTCGTAAAAAGAGGGTTTCAAACTGGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTA # Right flank : CACTCGGACTCGCAAATGGACGCTGGAAGGCAAGAGACGATCACCGTGGAACGACTGGAAGACAATGCCGTTCACACCCGGCTTTCCCCTGACGAAACGAATAGCCTGTCCGTCTCCGTAACGCCCCTGTCAACTTGCCCCGGTAAACCGGACCTTCGTGAAGCCTGCGGAGAACTCCGGTATGAGTGGGATGGACCTCAAGCGCCGTCGCGTCGTGCAAGGCCTGGGCGCTGGACTGCTGTTGCCGGCGCTGGGAGCGCCGGCGCTGATCGCCTCGCCCAGGGCGCGGCCGAAGCTGACCGATGGCGTGCAATCCGGCGACGTGCAGGGCGACCGCGCGCTGGTCTGGAGCCGCACCGACCGCCCGGCGCGGATGATCGTCGAATGGGACACCCGTAGCGTCTTCAGCGAGCCGCGCCGGCTAGTCTCGCCGGTCACCGACGAGCGCCTCGACTACACCGCGCGCATCGACCTGCGTGGCTTGCCTGCCGACCAGTCGA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 445-177 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLTF010000052.1 Pseudomonas aeruginosa strain 2021EL-00150 NODE_52_length_38237_cov_19.504146, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 444 28 100.0 32 ............................ ACTACCCGCAAGCGCCGCCGCTACAGCGGCCC 384 28 100.0 32 ............................ CTGAGCCGAGAGGCTCACATCGCTCATAGCGT 324 28 100.0 32 ............................ TACCGGGAGCGTGAGCAGCGCCTGGACCGAGC 264 28 100.0 32 ............................ TGGGTGGTGTGCCTGCGCAGTGGCTCCAGGTC 204 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTGGGTGGGTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGCCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGTTTTTGGTCTA # Right flank : AAAGAAGAGATGCGATCTTCCTGAAAATCAGGAGTTCACTGCCGTATAGGGTAAGCGTCCAGCCAAGTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCGTCCTTAACGTTAGGATTTCCATGCGCCAACGAAGCTCTTACCCCAAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 118-686 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLTF010000078.1 Pseudomonas aeruginosa strain 2021EL-00150 NODE_78_length_10205_cov_25.653999, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 118 28 82.1 32 AGA.G..A.................... GGTGCGCGGCTGGGATTCCTGCCAGGTTGAAC T [121] 179 28 100.0 32 ............................ TGGCAACCGGCTGGGGCAGCACGCCGCTGACC 239 28 100.0 32 ............................ TCACTGTTCTGCGGTACGTCGTGCCATCTCAT 299 28 100.0 32 ............................ TGTACGAGCCGGAGAAGAAGAGCCTGCGCGCC 359 28 100.0 32 ............................ TTCAGGTCCCGCTGGCTGTTGGCGACGGCCCG 419 28 100.0 32 ............................ TTCGAGTTTCGCACCGGATTGGTTCCGTACCG 479 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGCGGTCCAGGCG 539 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 599 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCCTAGGGCGA 659 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 95.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CCGTACGCCTACCTGAAGGATGTGCTGATGCGGCTGCCGACACAGCGGGCCAGCGAGATTGGCCAACTACTGCCGCATCAATGGGCACCCGCCTGAATTACGCAAGGTGAGTTCGGCA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTCTCGGCCGGGGCCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAACCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGGTCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGATTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCTCGAAGGTCTTCCGCC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10016-9568 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLTF010000078.1 Pseudomonas aeruginosa strain 2021EL-00150 NODE_78_length_10205_cov_25.653999, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10015 28 100.0 32 ............................ TACTGGGGAGCGAAAGAGTCCCGTCTAAAGCG 9955 28 100.0 32 ............................ CAGGATTACCCGAATCAGCCGCACACGAATTA 9895 28 100.0 32 ............................ TATTCGAGAACGATTATGGCCGACTTCTACGG 9835 28 100.0 32 ............................ GAAGGCCTCGCTGTGGATTGCGCAATCCACAT 9775 28 100.0 32 ............................ AAGAGTCGCGGCGACAACTACCAGACGTCCGC 9715 28 100.0 32 ............................ GTGGAGCGGTTGAACGCAGCCAACCGCGCCTT 9655 28 100.0 32 ............................ TCAACTAAATGGGTCGTACGTGGATTGGTGCG 9595 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : AACACCAGGGCCGCGGCCTCTCGTTTGAACTCGGCGGAAAACGTACGTCGTTGCTTGCTCATCAGACACCTCTCTCACGGCGAGGATTCTCGCCTAAATCGGTGTCCGGGATCAGTAGACCACTACAGGCTCTGGCAGGAAAAACCCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGTTTCACTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTCCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCCTGGAAGCTCACGCTCCTCATACAGACGCAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGTATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATCTCCCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGATGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //