Array 1 1889950-1889249 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009313.1 Streptomyces nodosus strain ATCC 14899 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1889949 30 96.7 31 .............................C CAGCCAGTGCTTGAGGACGGGGGCGGTGCGC 1889888 30 96.7 31 .............................A AGGGGGAGATCTGGCTGGTCGGCCACGGCCG 1889827 30 96.7 31 .............................T CCTCCACGTGAGTCTTCGGGATGACCAGCGT 1889766 30 100.0 31 .............................. TGTACAGCCCCGGCAGCAACTCCGGACGCCC 1889705 30 96.7 31 .............................T CTTCGACGTCAAAGAGTCGGTCGATGAGGCA 1889644 30 100.0 31 .............................. TCCGTCATCACCTGCCGTAGTTCCCGGGCGG 1889583 30 96.7 31 .............................C CACAGACGCGCGCGGGTGAGGCAGCGAAAGA 1889522 30 96.7 31 .............................A ACTGGGCCGTCGTCGCCCGCATGGCACAGGG 1889461 30 96.7 31 .............................C AGGTGGCGGCATGAGCGCCCGCCCGCACGGT 1889400 30 100.0 31 .............................. AGGTGCGGGCGCCCGTCCGCGTGCAGGAGCT 1889339 30 96.7 31 .............................T TCTGCCGGGCTATCAGCGCGGTCGCGAAGAG 1889278 30 90.0 0 ........A.................TT.. | ========== ====== ====== ====== ============================== =============================== ================== 12 30 97.0 31 GTCCTCTCCGCGCGAGCGGAGGTGAACCGG # Left flank : ACACGTACGCGGGCTCGTCGCGCACCGCGTCGAACAGTTTGGGAATCTGAGCCTGGAATGCCGGTGTGATTTTTCCCAAGTCATGCAGCCCCGCCCAGAGGGACAAGACCGACCGGCAATCTTCCCCGTGCAGACCCAGCTGCTTGGCGAAACGCAGACGCGTCCGCTCGCCCAGCAACTCGTCCCATAGCGTCGTGAACGCCGCTGCCACATCCAGCAGGTGACACATCACTGGGTAGGGCTGGCTCAGCCCATGCTCCTTCCCCCACAGCCGAGGGTCAGGGCACGCGGGGACCGAGGGCACGCCTTGAGCTTCCGTCATGCACCCACTTGCTATCAGCAGCCACTGACAATGCCCCTGAACAGCAAGAACACCAACCGAATCGCAAGCGGGCGCCTTACACTGACCGCAAGAGCTAACCACCCGGGAAGTGTTGATGCCTGCCGTTGGCACGAGTAAAGAATTGGCAATGCCCCTATAGCAGTGCAGGTCGCAAAGG # Right flank : TGACGGTCTGGAAGCGCGAAGTGGATCAGCCTCGGAGTCTGGCGGAGTCTGTGCTGGTGGGGTGAGTTTTCAGGGCCTCGACGAAGGTGGTGAAAGCTCTGGTCGGGAAGGAGAGGGTTGCCTTGGCCAGAGCCTTGGAGTCGCGTATGGATACGTGGGTGGGTGACTTGGCGATCTCCACACAGTCGTTGCCGTCGCCGGGGCCCGAGTAGGAGGACTTTCGCCAGTTGCTGGGGGTGGCCATGGTCATGACGCCTCATAATTCCTTCGCCAGCCTGTGGATGAAGTCACGGGACTGGTCGGGTGGGAGCGATACGGCTTCCACTTTACGGAAGAGCGTTCGAAAGGCGTCCAGTTGATCCTCTGAGTCGATGAACGCGGTGCCGTGGGGTGCGTCTCGAACCACCGTGTCGAGCCTGGGCATCGCGCCGCCCGCGTATTTCATCGTGCTGGTGGCTCCGGCGAAGCCGTCCAGATCGAAGGGGATGACGCGCAGGGTG # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGAACCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAACCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1899684-1900688 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009313.1 Streptomyces nodosus strain ATCC 14899 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1899684 29 100.0 32 ............................. TCTTCGACGTGAAAGAGTCCGTCGACGACGCT 1899745 29 100.0 32 ............................. GTCCCGGAGGTGGTCCTGTCACCGTCCGCGAA 1899806 29 100.0 32 ............................. TCGGTGAAAAGTACAGCTGTCATCGCGTGCCA 1899867 29 100.0 32 ............................. ACCGCGTGACTGCTCCCGTTCGGGTGGGCCCG 1899928 29 100.0 32 ............................. TAATCGGAGCAGAACATGCCCTACATCACCGT 1899989 29 100.0 32 ............................. CAGGCCCCCAGGTTGCTGCGGGTGATGCGCAA 1900050 29 100.0 32 ............................. TACAGGTCGAAAGCGAGCCTGCGGAGGTCGGT 1900111 29 100.0 32 ............................. CGTTCATCACCGCCGCCCGGCAGGCGCAGCAG 1900172 29 100.0 32 ............................. ACGTCGCCACCACCGTAGACGGCCCCGGCCCG 1900233 29 100.0 32 ............................. GCACTCCGAGACCAGGCAAAGGCAGCCGAGCG 1900294 29 100.0 32 ............................. TTTCTCGGGTCCGAAGTCGTCGGGCGTCTCGA 1900355 29 100.0 32 ............................. GACACTTCGCCCCCGCCTCCGCCGAGAGGTTC 1900416 29 100.0 32 ............................. GGAGTACCGATACGGTCAGCGCTCGCACAGGC 1900477 29 96.6 32 ...............A............. GTGTCCGACGCCGTGATCGGGGTGCTGTTCGG 1900538 29 100.0 32 ............................. ATCACTGCGAGGCACCCGCCGAGGTCCCGGAG 1900599 29 100.0 32 ............................. TCCACGTCAGTCTCCAGTCGTTGGGGGCTGGT 1900660 29 93.1 0 ..........................CA. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.4 32 GTCCTCTCCGCGCGAGCGGAGGTGAGTCG # Left flank : ACGCATCGTCCACGACCTCCAGGATCTGCTCGACCCCAGCGGCGACAGAGAGGTCCCCGATCCCGAGGAACAACTGGTCGACCTGTGGGACCCGGTAGCCGGGTCTCTCCCCGGCGGGGCCAACCATGGAACCGGATCATGAGCCCCGCCCAAGGGGAGGTACAGCCGCCGTGGCCTCGATGATCGTCCTCGCAGCCTCCGCCGTCCCCGACCACCTACGCGGTGCCCTCACCCGCTGGCTCCTCGAAGTCACACCCGAGCTGTACATCGGCACGGTCTCCGCTCGCGTTCGCGACGAACTCTGGGAATCCGTCACCGCCTGCGCCGACAGCGGCACCGCCGTTCTGGCCTATCCCAGCGACAACGAACAGGGCTTCGAACTTCGCACTGCCGGCGACCAACGCCGCGTCCCGGTCGATTTCGACGGACTGACACTCGTATCATTCACACGAGATAGCAAAGAGATGGCAAACCTGCTTTAGCCCTGCAGGTCACAAAGG # Right flank : GGCGGTCACGATGTCGAGATCACCGATGGCGTGAACCGGCCCTCACCCCGTTGGACGGGCAGGGGCTGTGGGTCTCGGGGCCCCGAAAGGGCCCCAGCAGGTTGTCAGCCGACCACCCGCCCATTCAGCACCACCCGTCGCGGGGCCGCCAGGACGCGTACGTCGGTGCGGGGGTCCTCGTCGTAGACCACGAGGTCGGCCGGGGCGCCCTCCTCCAGGCCGGGGCGGCCCAGCCAGCGGTGGGCGGACCAGGTGGTCGCCGAGAGGGCCTGGAGGGGCGGGATGCCGGCCGTCACCAGTTCCTCGACCTCAGCCGCCACCAGGCCGTGAGGGAGCGAGCCCCCGGCGTCCGTCCCCACATACACCGGGATCCCGGCGTCATAGGCGGCGCGCACGGTGTCGTAGCGGCCTTCGTGGAGTCGTCGCATATGGGCCGACCAGCGCGGGAACTTGGTCTCGCCGCCGTCCGCGAGGCGGGGGAAGGTCGCGATGTTGACCAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGAGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //