Array 1 273592-274779 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYDU01000002.1 Escherichia coli strain 200232, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 273592 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 273653 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 273714 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 273775 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 273836 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 273897 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 273958 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 274019 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 274080 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 274141 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 274202 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 274263 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 274324 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 274385 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 274446 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 274507 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 274568 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 274629 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 274690 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 274751 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATGGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 300479-301543 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYDU01000002.1 Escherichia coli strain 200232, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 300479 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 300540 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 300601 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 300662 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 300723 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 300784 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 300845 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 300906 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 300967 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 301028 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 301089 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 301150 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 301211 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 301272 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 301333 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 301393 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 301454 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 301515 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //