Array 1 239046-237375 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBHV01000001.1 Campylobacter fetus strain CIT01 NODE_1_length_297163_cov_7.46867_ID_1467, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 239045 30 100.0 35 .............................. TTTGTTTTAGATATTACAGTTATAGGGCTATTTAT 238980 30 100.0 35 .............................. TCTCCGTTATCTACCTCTGGCGCCATGCTCTCTCC 238915 30 100.0 36 .............................. ACCATATCATCTATGCTGATACTTTTGCCATTTATC 238849 30 100.0 34 .............................. GAAGCTAAATGACCATTAACAATAAACATATAAA 238785 30 100.0 36 .............................. AATTCTCCTGTGCAGTCCAATACACTTCCTTTATCT 238719 30 100.0 37 .............................. CACAATCCTTGCAAAACGCATAATTCAGCCCAAGCCC 238652 30 100.0 36 .............................. AATGATACGTCTTTAGCACTTAGCAAATTCGGTGCT 238586 30 100.0 35 .............................. AATTGCAAATTTAATCCAAGGTAGTCTAATCTCTA 238521 30 100.0 34 .............................. TTTTAGCCCCTTACGTAGTCTACTACCTTACCGG 238457 30 100.0 36 .............................. GAACCAGAAAAAAAAGTCAAGGCGGAGAGTGGGTTA 238391 30 100.0 35 .............................. TCTGGTATTAGCACGTAACCATCTTTTTGTACGTC 238326 30 100.0 36 .............................. TATCTTGCAGCTAGCAATATTCTTATTATATTTATC 238260 30 100.0 37 .............................. AGAAGTGTTTTAAACGGGCTTGTATCCCGAATTAGCT 238193 30 100.0 35 .............................. TTTCCGTCCATATCCCTGATAGTTCTAGGTCTTGT 238128 30 100.0 36 .............................. CGTCTTTTAGCTCTACTGGCGGTTTGTGGTTTGCTA 238062 30 100.0 36 .............................. TTTGTTTTAGATATTACAGTTATAGGGCTATTTATT 237996 30 100.0 36 .............................. TTTGTTTTAGATATTACAGTTATAGGGCTATTTATT 237930 30 100.0 36 .............................. CAAGTGCATAAATGTAGTCTTCGCCGTGTTTTGTTT 237864 30 100.0 35 .............................. TCTTTAACCTTTTACAAAGCTCACAACAACTTTTT 237799 30 100.0 36 .............................. AGCCCAGCTTCTAGTGGCTTAAAATCAGGTTCTTTA 237733 30 100.0 36 .............................. ATAGGATACTTCCAGCCATACAAAGAACTATAAACG 237667 30 100.0 35 .............................. TTTATCATAACGCCACTCATTTGCCACCGCCAAAC 237602 30 100.0 36 .............................. AGTTGATTTTTTAGAAGCAAAAGAGTTTTCAAAAAA 237536 30 100.0 36 .............................. AAAAGGGTTAGAAGTTTTAGCAAATTTAAAACAAGA 237470 30 100.0 36 .............................. GGGATAGTGATTCGCGGAGTTGGAACTTTGTCCTAC 237404 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 26 30 100.0 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : AACTCCTGCAAATTTTATTAAATTTAAATCCGCGATAGAAAAATTAATTGACAAAAATATCGATGTTATTACCGTTTTAAGGCTTATAAGAAAAGATGACGTAGATGAGATAAGTATAGGCGGTCTTGATTTTGTCAAAAATGAGATGTTTTTATAACCCAACTCAATTTTAATGTTAGTTTTAATTTATAGCAATAATAATATTTATATACCACTAACTACAAATTTATATTTTATACTGCATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAACATAGATAAATAGTTTAAATTTAATGTTCTTATGATATTTAACTTATTATTGTTATTTTTTTAATTTAGATTGGAAAATAAATTTATTCTCATTATTTATAGCTATATTATATATATAACAAATAATCTATTTTTAATAGTTTTAGATAATATCTTTTAATTTATTTTTTATCTTAATTGCTTTTTTAAATTTACTTAGATGATGAGTTTATTATA # Right flank : GGCGGTATTGGAAGTATAAAAATTAATAACGTTGTTGTTTGCTAATTTTTAACACAAAATTGTCTGTAGCAATATATTTAATATTTGCATTATATCTGCAAACTTTTAAAATAAACTTAAAAAAGGATTAAAATGATAAAAAAATTAACAGATAAACGGCTATCTGAAATAACAAAAATCCCTTGCGGGACGATAGCCGGTTGGAAGAGGTCTGATGGTTACAAAAAAGATATATATCTTTTCTTTAAAAACCTAGACCCGGAATTTTTAATAGAGAATTTTGGGGCCAAAACTCCTATAATTCCTTTGCTAGATAAAGAAGTAGTAGGCGCAATAGGTATTTCGCAAGGCACCCTGTATGGCTGGAAAAATGGGAAGGGGCATAGAAAAAAGCTATATGATTTTATAGCGCAATTTAGCGCAAAAGAGATTTTAGATATCTGTGCAAAAGAAAAAGATAGCATAAATGATAAAACGCTCTCAAAAATAACTAAAATTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [73.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 251646-251093 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBHV01000001.1 Campylobacter fetus strain CIT01 NODE_1_length_297163_cov_7.46867_ID_1467, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 251645 30 100.0 35 .............................. TTTGTTTTAGATATTACAGTTATAGGGCTATTTAT 251580 30 100.0 36 .............................. AGAATTATATTTTATTACACAAGATTTAAGCCTTGT 251514 30 100.0 35 .............................. ACAACAGCACTTGGCTCTTGCCAAAACGATATACT 251449 30 100.0 35 .............................. TCTCTTGCGTACCCTGCAAAGAACATAGCGTCTCC 251384 30 100.0 35 .............................. TACTAAATTTAAAGGTAGAAAACTTACTAATTATG 251319 30 100.0 36 .............................. CGAATGAAGTAGCAAATAAAATATCAAAAGACTTGC 251253 30 100.0 35 .............................. CCCAGTACAAAGCATTCTCTTAAATCAAAATCTTT 251188 30 100.0 36 .............................. CCATCTAACTACTGCAGGCGGAACATTTCCCGATGG 251122 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 9 30 100.0 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : AATATAATTTTTTGTATAATCCAACTTCTATTTTATAGTTATTTATTACTCTAAGCCTAAATGGTGAAATTGGTAGACACGCTAGACTCAAAATCTGGTACGGGAAACCGTGTGTCGGTTCGAGTCCGACTTTGGGCACCAGGGGTTTTGTATATAACCCAACTCAATTTTAATGTTAGTTTTAATTTATAGCAATAATAATATTTATATACCACTAACTACAAATTTATATTTTATACTGCATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAACATAGATAAATAGTTTAAATTTAATGTTCTTATGATATTTAACTTATTATTGTTATTTTTTTAATTTAGATTGGAAAATAAATTTATTCTCATTATTTATAGCTATATTATATATATAACAAATAATCTATTTTTAATAGTTTTAGATAATATCTTTTAATTTATTTTTTATCTTAATTGCTTTTTTAAATTTACTTAGATGATGAGTTTATTATA # Right flank : AAGAGCAAACATGGCAGAGACCTTAAAAGAGAAGTTTAAAGGCGTACTAAGTGCAAATACTAGCTATTTTGAAGGAGTGAGCGATCATATTATAAGCCAAATGCAAAATATCGCAAGAGTAAATCAAGCTAGCAAATATGGCGTAAAACACTACAAAGTGGTAGCTAGGATTGATAACCGCACAAGTGATATCTGTAGAAGTATGAATGGACGTATAATCCCAGCCTCGCATATAGAAACTCAAAGCAACAATATCCAAAACGCTAAAGATATAAACGAGAAAAAAGCAGCTGCTATTTGGAGAAATGAGCCTTTTTTTGGTAAAATACTCCCTAGTAACTTCGGGCTTCCACCATATCATTTTCGTTGTAGAACCGAGCTAGTACCGGTGTGGATAAATGAAGAAGAGATCGATGGAGTAAAGATGAAAAATACAAGCCCGCTTAGCAAAGATGAAGTAGTAAAGCATATAGATAAAACAGGCGTGGAAAGAGTTTGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //