Array 1 152947-153774 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQWG010000001.1 Streptococcus thermophilus strain DS14_14 NODE_1_length_207436_cov_210.011838, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 152947 36 100.0 30 .................................... AAATTCTAAACGCTAAAGAGGAAGAGGACA 153013 36 100.0 30 .................................... TACTGCTGTATTAGCTTGGTTGTTGGTTTG 153079 36 100.0 30 .................................... TTCCTCTTGTAAACATTTTATTAATAATGT 153145 36 100.0 30 .................................... TATCCCAGAGAATGGAAGAACAATTATAGA 153211 36 100.0 30 .................................... TATGAATTGTCAAATTAACGGTTGCGCTAA 153277 36 100.0 30 .................................... CGATGGAAATGATGGCTTGCCAGGTAAGGA 153343 36 100.0 30 .................................... AATGGGAAAGTAGCTATATATGATCCAGAG 153409 36 100.0 30 .................................... GAAGGCACAAGAAAGTCAAATGCGTAGCGC 153475 36 100.0 30 .................................... AATTTTAACAGATATAGTGTAATCGGTATT 153541 36 100.0 30 .................................... CTATTACTATACTTCCGAAGAGATTGCAGA 153607 36 100.0 30 .................................... TATCCCAGAGAATGGAAGAACAATTATAGA 153673 36 100.0 30 .................................... TATGAATTGTCAAATTAACGGTTGCGCTAA 153739 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CTTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTAAAATATGAGAAGGAACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 11920-14066 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQWG010000020.1 Streptococcus thermophilus strain DS14_14 NODE_20_length_25180_cov_194.662368, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 11920 36 100.0 30 .................................... TGTTTGACAGCAAATCAAGATTCGAATTGT 11986 36 100.0 30 .................................... AATGACGAGGAGCTATTGGCACAACTTACA 12052 36 100.0 30 .................................... CGATTTGACAATCTGCTGACCACTGTTATC 12118 36 100.0 30 .................................... ACACTTGGCAGGCTTATTACTCAACAGCGA 12184 36 100.0 30 .................................... CTGTTCCTTGTTCTTTTGTTGTATCTTTTC 12250 36 100.0 30 .................................... TTCATTCTTCCGTTTTTGTTTGCGAATCCT 12316 36 100.0 30 .................................... GCTGGCGAGGAAACGAACAAGGCCTCAACA 12382 36 100.0 30 .................................... CATAGAGTGGAAAACTAGAAACAGATTCAA 12448 36 100.0 30 .................................... ATAATGCCGTTGAATTACACGGCAAGGTCA 12514 36 100.0 30 .................................... GAGCGAGCTCGAAATAATCTTAATTACAAG 12580 36 100.0 30 .................................... GTTCGCTAGCGTCATGTGGTAACGTATTTA 12646 36 100.0 30 .................................... GGCGTCCCAATCCTGATTAATACTTACTCG 12712 36 100.0 30 .................................... AACACAGCAAGACAAGAGGATGATGCTATG 12778 36 100.0 29 .................................... CGACACAAGAACGTATGCAAGAGTTCAAG 12843 36 100.0 30 .................................... ACAATTCTTCATCCGGTAACTGCTCAAGTG 12909 36 100.0 30 .................................... AATTAAGGGCATAGAAAGGGAGACAACATG 12975 36 100.0 30 .................................... CGATATTTAAAATCATTTTCATAACTTCAT 13041 36 100.0 30 .................................... GCAGTATCAGCAAGCAAGCTGTTAGTTACT 13107 36 100.0 30 .................................... ATAAACTATGAAATTTTATAATTTTTAAGA 13173 36 100.0 30 .................................... AATAATTTATGGTATAGCTTAATATCATTG 13239 36 100.0 30 .................................... TGCATCGAGCACGTTCGAGTTTACCGTTTC 13305 36 100.0 30 .................................... TCTATATCGAGGTCAACTAACAATTATGCT 13371 36 100.0 30 .................................... AATCGTTCAAATTCTGTTTTAGGTACATTT 13437 36 100.0 30 .................................... AATCAATACGACAAGAGTTAAAATGGTCTT 13503 36 100.0 30 .................................... GCTTAGCTGTCCAATCCACGAACGTGGATG 13569 36 100.0 30 .................................... CAACCAACGGTAACAGCTACTTTTTACAGT 13635 36 100.0 30 .................................... ATAACTGAAGGATAGGAGCTTGTAAAGTCT 13701 36 100.0 30 .................................... TAATGCTACATCTCAAAGGATGATCCCAGA 13767 36 100.0 30 .................................... AAGTAGTTGATGACCTCTACAATGGTTTAT 13833 36 100.0 30 .................................... ACCTAGAAGCATTTGAGCGTATATTGATTG 13899 36 100.0 30 .................................... AATTTTGCCCCTTCTTTGCCCCTTGACTAG 13965 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 14031 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 33 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGATTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 38912-39674 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQWG010000005.1 Streptococcus thermophilus strain DS14_14 NODE_5_length_120250_cov_195.426698, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 38912 28 100.0 33 ............................ TATACCTATATCAATGGCCTCCCACGCATAAGC 38973 28 100.0 33 ............................ CGACACCACTAGGGCGAGTCTGAGCGCCCCCAG 39034 28 100.0 33 ............................ CGCAACCCCTCCTTAGACATGGGAACAGTACTA 39095 28 100.0 33 ............................ CTGTATTATCGGCGAATAGATCAGATTCTTCTG 39156 28 100.0 33 ............................ ACCCTTACAAGGCTGATAGACCTTTGTCGTTTG 39217 28 100.0 33 ............................ CTCGTTTAAATTTGTAGTTATCATTAACAATAT 39278 28 100.0 33 ............................ CAAGGTAAAATTGCCGACAATGTTGGAACGTTG 39339 28 100.0 33 ............................ TATACATTACCTCATTTCCAGCTGAGAACATTG 39400 28 100.0 33 ............................ TCAGCGCCTCGACAAGCATCAAGAAGAACAGAA 39461 28 100.0 34 ............................ TGTACTGGTTGAGTATTCAAGGTAGGTGTGCCAC 39523 28 100.0 34 ............................ ATACTCAACTTCCTTACCCTTAACCCCTTTCAAA 39585 28 100.0 34 ............................ TGGTCGTGTGTTTGGCATTGGCTCAATGGGAACA 39647 28 96.4 0 ..........................T. | ========== ====== ====== ====== ============================ ================================== ================== 13 28 99.7 33 GTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : GAGAAAAAGAATACAATCATTGAGATTGGAGCTGTCAAGTTTAATGGACAACAAGTAGAGGAATTTAATGCTTTGATTAAGTATGAGGAGAAATTACCTCCTACAATTTTTAAATTGACAGGTATTTCTAAATCCTTATTAGATCAAGAAGGACGTGATTTAAAAGAAGTACTTTCTGAATTCTTATTGTTTATTGGTGATTTAACTTTAGTTGGCTATAATATCCATTTTGATATTCAGTTTATCAATAATAAACTGAATAAATTTGGTTTACCCTTATTAATAAATAAAACTCATGATATAATGAGATATGTCAAGGATGAGAAGTTATTCTTGGATAATTATCAATTGCAGACTGCCCTAAAGTCATATGGAATCGAGGATTCAGTTCCTCATAGAGCTTTGAAAGATGCTAGACTAATCTATCATTTATCAACTAAAGTAAATAAATTCTTAGCTAGAATGAAAGAAAAGTCTTAATTCCATTGGGATCTTTTAGT # Right flank : CTACAAATTTAGGTCATATGGAGATACGACAATATCAATCGATTGGTTGAGGTCTCTTTTTAGATTTGTTAATTAGTTGATTACTTTTTAAGTATTGCCGTTGTAAGCAGCATATCTTAAAGATAGAGATGCTGTAAAACTTTCTCATAGACTACTACATATTGTTTTAGAGCTATGTTTTTTCTAATGGTTCCAAAACAATCGCTTTCTCTTTATATGCCCACCAAAAAAAAGCCAGTGGCTCTTTTTAAATATCATCTTAATAACCAGGTTCAAAGATTTCAATAATTTGAGTCAGATAACCTGCATGTAAACCGATTCGATAGTCAACATTTGGCAAAGTCTTAACCAAATCATTCAGTTCTTTATCTTTGCTAAACTTATCAGCCAAAACTGGTAATTCAACGACAAGGAGTTGTGAGTGATCTAGTTGGAGGTAACTACTGTTGACCTTGATATCAGGACGAAGTAGTTTAAATATCGCTTTATCCGAAGTTTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 109588-109335 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQWG010000005.1 Streptococcus thermophilus strain DS14_14 NODE_5_length_120250_cov_195.426698, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 109587 30 100.0 42 .............................. GGAAACGCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 109515 30 100.0 46 .............................. GGAAACTCAAAATATGTTATTACCTTGTATTTCATAATTCAATTAA 109439 30 96.7 45 ........................A..... GGAAACCCACTTGCTGTGTACATCCTACCAGTTCCGCCTATGATG 109364 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 4 30 99.2 45 GATATAAACCTAATTACCTCGAGAGGGGAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCAACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : TTTTTTGAAAATTTTGAAAACATTATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGACGACATCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGACAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTTT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //