Array 1 108873-106705 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVH01000008.1 Salmonella enterica strain BCW_2910 NODE_8_length_175094_cov_2.54128, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108872 29 96.6 32 ............................T GTATCGTGATGTCATGATTTTTTACTCAACTC 108811 29 100.0 32 ............................. GGTTGGGTGCATCAGAAATATCTGGCACCATC 108750 29 100.0 32 ............................. CGCAGGCTGTTTGACGGCGGACACGTACACGG 108689 29 100.0 32 ............................. CCGAAATACGATGCCGGAATATCGTAAACGGA 108628 29 100.0 32 ............................. TATTCAGGGTTACCACATCGCGGCAGAACCTG 108567 29 100.0 32 ............................. CCGAACGGGTGCTGGCGGCGATTGAGGCAGTG 108506 29 100.0 32 ............................. GAGGTGGCTGCATTAATTAACTCCCGCGCCGG 108445 29 100.0 32 ............................. CAGTGGCAGACGGGCGACACCGCGCCAGATTA 108384 29 100.0 32 ............................. GAGTGGGTAACGGAATCCCCAGAAAACCGGGA 108323 29 100.0 32 ............................. CACAGAACAGACTCAGCGTCAGGCGTGTTCGC 108262 29 100.0 32 ............................. CCGTTTGAGGGCTATTGCACTGGGAATAACGT 108201 29 100.0 32 ............................. AGCAACATCGACAAACAGGCGCTGCTGGGTGC 108140 29 100.0 32 ............................. CGCCGTCGTGCGTGAAAATCGGGTTAATGGGG 108079 29 100.0 32 ............................. AAGCAGATACCGTAGAGAACCAGAATCAGGCT 108018 29 100.0 32 ............................. TTGTTACTTCTTCTCTGGCTGTTGCTAGTTAT 107957 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 107896 29 100.0 32 ............................. TATACACGGCACTATTTGGAAATCAGGCGGGA 107835 29 100.0 32 ............................. GGTCTGCTGAAACGGTTACCCCGTTATCGGTA 107774 29 100.0 32 ............................. TATACTCGTTGCCGATCAACGCATATTGATCA 107713 29 100.0 32 ............................. ATGCGGAACTATATCAGGAAAATCTTAAAACA 107652 29 100.0 32 ............................. ACTTACGTCAGCGCGCCGATTTGGTGCCGGAG 107591 29 100.0 32 ............................. ATCTCATAGCGACGATTTATACCTATTTAGCT 107530 29 100.0 32 ............................. TGCGGCCAGCATCGCCATTTCTGACAACAGCA 107469 29 100.0 32 ............................. GCGGAGAGGGTGGGGATAATGGAGCAACTGAT 107408 29 100.0 32 ............................. TCACGGAAACGATCGCCTCATCATTAAAGTTA 107347 29 100.0 33 ............................. ATTCGTTAATTAAATATGACGGCAATCAGCAAC 107285 29 100.0 32 ............................. GCTGGCCGCTGTTTCTTGTCTCCCCGTCCTGG 107224 29 100.0 32 ............................. CCAGCGGCGATAATTGCTCTTTCAATATCGCG 107163 29 100.0 33 ............................. GACATTTCATCCGGGGTTATTTGCCATTCACGG 107101 29 100.0 32 ............................. CCGGGGACGTATCGCGGAATATCTCAGATTGA 107040 29 100.0 33 ............................. AGCGAGGACGAGTTTAACGCGCGGTTCCCCAGC 106978 29 100.0 32 ............................. GCGCGCAACCCGGCATTTCACAGAAAATTTTT 106917 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 106856 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 106795 29 100.0 32 ............................. CCGCTTTGCTGGCAACATTCACCACATAGCAT 106734 29 96.6 0 ............T................ | A [106707] ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGCGGCCATTTTCCCGTGGCTTGCCGCGACGCGGACCAGCGAGCAGGCGAATGCCGTTACCACGCCGGAGCAGGTCAATAAACTCCAGGCGTACTGGGGGATGCCGCGTCGTATCCGCCTGGATTTTGCCACCTTACAGTCAGGTTGCTGCGATATTTGCGGCGCTGAAAGCGATGAGCTTCTTGGCTTTATGACCGTCAAGAACTACGGCGTTAACTACGATGGCTGGCGGCACCCGCTGACGCCTTATCGCGCCCCGGTAAAAGATCAAAACGCCTTCTTTTCCGTTAAACCGCAGCCCGGCGGCCTTATCTGGCGCGACTGGCTGGGATTAAGTCAGAACAACCAGACGGAAGCGAATTACGAATCTCCCGCGCAGGTAGTCAAGGTGTTTAACGCCCGCTCGCTGACTGACGTTAAAGCGGGGATCTGGGGCTTTGGCGCGGATTTCGACAATATGAAAATTCGCTGCTGGTATGAGCATCACTTTCCGTTGCTGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCATTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 123117-120401 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVH01000008.1 Salmonella enterica strain BCW_2910 NODE_8_length_175094_cov_2.54128, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 123116 29 100.0 32 ............................. GAAGTCTCTAACCATTCCTCCTGAGATAAGCA 123055 29 100.0 32 ............................. ACTCATTAACTCCCAGTTCATGCCGTGATCAC 122994 29 100.0 32 ............................. GCGGTTTCTCCGTACGAATCATCAGTAATTCC 122933 29 100.0 32 ............................. TTTGATTGTGCGGATTGACCAAAAGCCGCACC 122872 29 100.0 32 ............................. CTAACGATCAAAAATACGAGGTTTGGCACGAC 122811 29 100.0 32 ............................. TTGCAGCTGCAATTGGAAAACACTGGCTCGAT 122750 29 100.0 32 ............................. CCCTGTGCGGTGTACATGCGGTACGACGTAAA 122689 29 100.0 32 ............................. AGTCGGCTTGGACGTTGACGGCACACCCTTCC 122628 29 100.0 32 ............................. GACTGGAGAATAACAATCCCCCCGACACACAG 122567 29 100.0 32 ............................. ACAATACACTGAAACTGGCCAGCGACATGGAA 122506 29 100.0 32 ............................. AGTTTACTCCAGATATGACAATGCGCCGCTGG 122445 29 100.0 32 ............................. TCAGACTCCGGTCAGAATTGCATAGTCGTCAG 122384 29 100.0 32 ............................. CCAGCATCAGGCAATCAACCATCACCAGAAAA 122323 29 100.0 32 ............................. ACGACATCGCGCAGGCTATCTGGACGGCGGCA 122262 29 100.0 34 ............................. GGGTGTTTTGGAAAAGTTCGGGCCAAATCTCGGG 122199 29 100.0 32 ............................. TCCATTGCCCGCGAGATGCCGGTTACGCAGGA 122138 29 100.0 32 ............................. ATGGCTGGTTCGCTTGCTGCATCCGGTATGCA 122077 29 100.0 32 ............................. CGTGTTCTCGGCGAGTGGTTTTTTACGTCCAA 122016 29 100.0 32 ............................. TTAACAACTGCCGCGCAGATGATCGGGAAATT 121955 29 100.0 32 ............................. TGCTTACGGAGCGCATTTTCTTTGCCTTCAAA 121894 29 100.0 32 ............................. CCACCACCGCCGACCTTAATTTCGAAGTTGCG 121833 29 100.0 33 ............................. CGTGATTACGGCAAGGTATCACCACAATTCTGG 121771 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 121710 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 121649 29 100.0 32 ............................. GGATCTGTATCCCCTGCAATAGCGGTCACATG 121588 29 100.0 32 ............................. GCTAGGGTTAAACAGGTAACAATATGGGGCGA 121527 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 121466 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 121405 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 121344 29 96.6 32 ............T................ ATTATATAAAAGGCGGCGGCAATGACGGAGGT 121283 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 121222 29 100.0 32 ............................. ACACCAGCTACCGGCGACGCCTGCAGGCTGCA 121161 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 121100 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 121039 29 96.6 32 ..A.......................... CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 120978 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 120917 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 120855 29 96.6 32 ...........................A. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 120794 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 120733 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 120672 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 120611 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 120550 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 120489 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 120428 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================== ================== 45 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTGGC # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGTAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGATCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //