Array 1 89848-89569 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPRC01000012.1 Sulfolobus acidocaldarius strain GG12-C01-01 GG12_C01_01_scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================== ================== 89847 26 96.2 36 .........................C ATATCATCATCTCTCATCATCTGCCTGCAACGTATC 89785 26 100.0 35 .......................... CACATTCATCCCTATAGACATTTATTGAAAACGAG 89724 26 100.0 40 .......................... TTGCTTTAACATAGATCGGTGAAAGCATCTCAAAAGGTAG 89658 26 100.0 38 .......................... AAGTATATATCATTTGAATGAATGTTGAGAGCCACATT 89594 26 73.1 0 T..A.G.........AA......G.C | ========== ====== ====== ====== ========================== ======================================== ================== 5 26 93.9 38 GAAGAATCCCATAAGGGATTGAAAGT # Left flank : TGCCGATTCCCCTCTTGTTTTGGTACATCGAGGGAAATTTTCATGTAGGAGAGATTAAGTTTCCTTCTAAATACTTTTCAGTAATAGAGGTTGTTTAATTTTAGATAAAAGAAGGGAATTTATAAATTTATTTATAAACACTACTATGAACGTCTTTTGAAAAATTATACTATGAGCAAAGAAAATTATGAAAAACTTTTCAAGGTGACCTTACGATTTAAGTAGTTAATACTAGGTGTAATCTTACCATAATTTTCGATTTCGTCATAAGGTTTATAAACGTCATTTTTCGAGTCTCAATGCAACCTATCCCAACTTAGTCACAACCCCTTAACATTTATAAATGCACAACCATCTTTCAACTCTAGTTAAGCACTATGCGACCAAAAGACCTAAACATAATTACTAGGATTCAAGGTCGCATGATTAAGTTAGGGGCTTAAGCAAAAGTTTATTAACAAGAACGTCAAATTTAGGATAAGGGAATAATAAATACATCA # Right flank : CGTATTCATTTTTATATAGAACTTTAATTATTGAGTAGAAGAGGTCAGTAATGAACATTTTAACTATTTACTTTCCCATTTCTCTACGGAGAAGTTCATTAAGAACTTTGATGATAAGAAAAGGACTCTATTATAATGAAGTAAAAAGTGTTTAAGTCAAGCAAGTGAAGCATAGGTACTAAGAGAGTCCTTTAAAATTTTATAGGGTATATCCCCATGAAGTATCTACTTATCATATTCGATAACGTAATCGAGAGGCGTGTTAAGGGCGTATAAGTTATGCAGGATTGAAATACGCTCAATTCTTGCATCATGTATAGGCTATAACAGAGAGCTGGTCATGAAGAGTTTTAAGAGAAACTCTTTCTTTAGATAGAGAATCACTTTAGGAGCCCTCATACCCTTTTATCTAGTTGAGACATAGGAAGAAACTAGTGAAGATAAGTGTAGATATTTTTCTAAGTCAAGTAACCTCGCAAGATGCCGTGATCTTTAGGTTT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGAATCCCATAAGGGATTGAAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 2 129900-129242 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPRC01000012.1 Sulfolobus acidocaldarius strain GG12-C01-01 GG12_C01_01_scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================== ================== 129899 25 100.0 39 ......................... CTCTGTTCACAGAAATATTTGTCAAGCTCAATCTTAAAG 129835 25 100.0 42 ......................... AGTTTTGGGAACACTTCTCTTCCCTTTATCTGTTAGTTCATA 129768 25 100.0 39 ......................... CTCAAATCGTTTGCGTACTGTTTAAAGCTTTTTAAACTC 129704 25 100.0 37 ......................... AGCACCCTATTTTCAGGTGCTGGCTGACTAGAACTTT 129642 25 100.0 38 ......................... GGGTATAAATAAAGTATGCCAGCCTGTGCTAATGACAG 129579 25 100.0 36 ......................... AGTTTATTATGTCATTGGACAGCAAGTCATACGAGA 129518 25 100.0 41 ......................... TTTTCTCCTTTTTTCATAATACTTCTTTCCATATTTCCGCA 129452 25 100.0 37 ......................... GCTCTGCTAACATTAGCCTCTTCTCCTGCTAGAGCTA 129390 25 100.0 38 ......................... ATCTTGTCGCTTATGTGAACGTCTAGGGAGTCGATAAT 129327 25 100.0 36 ......................... CCAAACCAAGTTAGGTTTTATGTTGAAGGGGACTCT 129266 25 96.0 0 ..............A.......... | ========== ====== ====== ====== ========================= ========================================== ================== 11 25 99.6 38 GATGAATCCCAAAAGGGATTGAAAG # Left flank : CCCCATAAAACACCTAAAATTTAAATACAAGGAAAGGGAAAAATAAGACAAGGGATATAAAAACAAACC # Right flank : ACGGCAATTATGGTTATATCATAATGATAATGCTAAGTCGAGCGTATTAGACTAGTTATATCTAAGGGATGCGCTTTACTCACAGGTAGTATAGGAGTAGTGTAGACTTGGAGGAGGAATAACGCCATTTATTAGCTCTACCTCCACAATAGTTTAATGCAGCAATAATGTCGTCTCTGGACAATCAATATAGATCTAGAATTGCTAGGAAGGGGTGCGTTTTCGTAAGCTATACTTCTCCTCACACGCACGTTAGTGTCTGTACTGAATTACAAGAAGATCTTCTACTTTAACGGCACAACACAGAGCTCTAAGCGATAAAAAAATTAATAATGAAATAAATATAAAATTAAGTATGAAAGATGGGAAAAAGATAGCATTCGTTAAGGACCACGGGGCTCACCTGAGGGTCAACAAGGGAATGATAGAGTGCTCAGTTAAAGATGAGGTCAAGTGGTCTGTGTCTCCTTCAGAGTTGTCCTCGATCGTCGTGATCTCAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGAATCCCAAAAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 38885-30957 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPRC01000011.1 Sulfolobus acidocaldarius strain GG12-C01-01 GG12_C01_01_scaffold4_last, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 38884 24 100.0 38 ........................ ATCGTAAGAGAAGTGGGCTAGCGCTACCCTCCTCCACT 38822 24 100.0 38 ........................ AGAAAATATCTCAAGGAGGGCGAGGAAGTATGCGAAAG 38760 24 100.0 32 ........................ TGGATGCTGAGTTAACTCCCCAGTTTACCGTA 38704 24 100.0 39 ........................ TTTTAGCCTGACCATTTCCCTCGTTAAAAAATAAGGAAA 38641 24 100.0 34 ........................ TTTCACGCTCCATGACCTCAGTGAATATCTCATT 38583 24 100.0 37 ........................ TCATAGGGGCTATATTCAACAATACGTTGCTCCAGTT 38522 24 100.0 42 ........................ GAGAAGAAGCAAAGCATACCGCTCTACAAGGTTCCTTCAGTT 38456 24 100.0 36 ........................ TATGTCGATCTGTCCGGTGTGCTGGTGGGCGAGCAT 38396 24 100.0 39 ........................ AAATAGTGGTTTCCAAGACTGTGCAAATGCTTTTTTATA 38333 24 100.0 35 ........................ TTTTAGCTGTTTCTCCATTCCGTCCCACCAACTAT 38274 24 100.0 36 ........................ TAAAATATTTTAATGTTCCGGAGATAGATTATAACT 38214 24 100.0 35 ........................ TGATATTTGGAGTGGTCGTGATTTTAATGGGAGCT 38155 24 100.0 35 ........................ ATTAACTACATCGCTAACAGCTTGGTACAGCCTGT 38096 24 100.0 36 ........................ AACAAAAAAATGAAGTTTTGGGTTATGACTTTCTAC 38036 24 100.0 37 ........................ TAGAGGCACAATTACAGAATTTAGTAATTGATCAAAG 37975 24 100.0 37 ........................ TGAATTCTGCCTTTTTATATAACGCATTACTGTGATC 37914 24 100.0 35 ........................ TTTGAGACGCTGAAAGACGTAGCGAAAGACTCTGC 37855 24 100.0 34 ........................ ATTAAAATGCTGTAGAAACACTTGACCAAATATA 37797 24 100.0 38 ........................ TAAAGGGATCCTGACCTAAGGACTATCGGGCTTACTTT 37735 24 100.0 35 ........................ ACTATCTCAGCTATCGTCACTATCGACATCTTCAC 37676 24 100.0 34 ........................ CATTTTATTTATATAGCCTCGTTGTATAGCTTCT 37618 24 100.0 35 ........................ ACTGCTAAAGAGCGCAGGTATTGCGCAAGACTACA 37559 24 100.0 36 ........................ ATAATATACGACGCTCTGGTTAGGTAAAGGTACTCT 37499 24 100.0 35 ........................ AAAATTTCATTCTAAAGAGATAACAGATTTGGGCT 37440 24 100.0 35 ........................ AGTGAATGCTTGTCCTGAGCCTAGTCTGTTTAACG 37381 24 100.0 35 ........................ ACATTTGCTGGAGTTCAGAAAATATCAGTAACCAA 37322 24 100.0 36 ........................ AAAGTTGTTTCAGCCCCATCTTCAATAAGTGAAGGT 37262 24 100.0 36 ........................ AACATAAAAAACACTGCTAGTTTCTATCTGATTAAT 37202 24 100.0 36 ........................ ATAGATAAAATAAATAGTTAATGTTTCATAAAATCT 37142 24 100.0 36 ........................ AACAACGTGATGATACTGACATTTGCGGGCTATTGT 37082 24 100.0 34 ........................ GCTGTTCATATAACTGTAATAAATTAAGAAACTT 37024 24 100.0 34 ........................ AACTCTTGAATTGTTAAGTCTTTAATGAATGCAT 36966 24 100.0 34 ........................ AATGTACACCGTAGCCATTTTTTTGCACTTCTTT 36908 24 100.0 35 ........................ AAGAACAGCGATGTTTACAAGTCAGCACAAGACGT 36849 24 100.0 35 ........................ CATTTTCTTGGTTTTATCTATTTACCGTTTTAAAC 36790 24 100.0 37 ........................ CTAGATTGTTAGCACCGTGCATTAGCAATAATGCGTT 36729 24 100.0 34 ........................ GATTGCTGATGACGATGGAATAGTTACCACAAGC 36671 24 100.0 35 ........................ TTTTATTTTCACCGACAAAACGAAAAAAATTGAAT 36612 24 100.0 35 ........................ TTAAAGAGGCAACAAAGCGAAAAATTCTATATGCC 36553 24 100.0 35 ........................ TTGTTGTGCTAACTGGTTTATCGCATCCCCTATTC 36494 24 100.0 35 ........................ TTATGTTATTTGTACAAACTTCTTAGTTGCCAATT 36435 24 100.0 36 ........................ TTCTTGTAGTTTCGGGAAGACATTCTCACTGGTGTA 36375 24 100.0 39 ........................ TAGTAGTAGTTAATACTGCTGACTGAATTTTTCTTAGTT 36312 24 100.0 35 ........................ TTTATTTCAAAAAGTTACACTATAAAGATGAATTA 36253 24 100.0 34 ........................ TTGGGTAAGATCTAGACCTTATGTTCCTCTTTCT 36195 24 100.0 33 ........................ TTGGGATATATTGCACAGACAAACTTTGTCTCC 36138 24 100.0 40 ........................ ATGTTAGGAATATTGTTAAAAATCCGCCTATAATTCCGAT 36074 24 100.0 34 ........................ ATTTTTTATGCCATACCAACCCATTTTAATCAAA 36016 24 100.0 34 ........................ CAGTATATGCGTGTTGATGATTTTCTGAAGACTT 35958 24 100.0 34 ........................ ATAGCAAAGTACGAATAATCTATATTCCTGACCT 35900 24 100.0 34 ........................ ATATCTCATGGTTATGTTTCTTCAGATCCAGGCT 35842 24 100.0 35 ........................ GCGGCAGCTACTGGGTCTAACGCCTTCCACTCGAT 35783 24 100.0 35 ........................ ACATAAGCCAGCTAAAGAAGACGTATCTGACTGAG 35724 24 100.0 37 ........................ ATTATAAGTAAGGGCTGACTTGTTGAGTAAGACTGGT 35663 24 100.0 37 ........................ ATGATTATGAAATTTGTACAGCAAATGTTGATGAGAA 35602 24 100.0 36 ........................ AATGTCTTTTTTTATATAAATTTTTCGAGTCCTAAT 35542 24 100.0 35 ........................ AGGGAAAAGATCCTCTTCCTAGCTCCTTTCTCTTG 35483 24 100.0 36 ........................ CCTGTACAACGAAAACGGGACATTGTGGGCAATACA 35423 24 100.0 36 ........................ CTCGACCTCTTCTACTACTTCTGGTGGTGCACCCAT 35363 24 100.0 41 ........................ TTAATTAAAGCGGCAAGCTCTCTAGCCAGGCTAGATCCCTT 35298 24 100.0 36 ........................ AAAACAATGTTTTAGTTTTACAGACATTATAAAATT 35238 24 100.0 36 ........................ ACTTCAAGAATGGAATACATTTGTTAAAAATTTGCT 35178 24 100.0 34 ........................ GCCCAAGCTCAGGCTGGAAACAGTGGAAATCCGC 35120 24 100.0 35 ........................ ATATAACAAAGCGCATTGCTGATACGTTACACAGA 35061 24 100.0 34 ........................ TCCATGCCCTCGCCCCCGCCTTTTCTTTTTCTTT 35003 24 100.0 35 ........................ TTCCACATTGATGAGGTAAGCCTCTGAAAAGGTTT 34944 24 100.0 36 ........................ TGTGACCAAATTGAGGCAGAAGTATCCGCAGGGGAA 34884 24 100.0 36 ........................ ACCCCTGACTTTGTCCTTAAAGATAATGAGTTCTTT 34824 24 100.0 38 ........................ AGAAAATGAGTAGTGAAGTTAAGACAAAAAATAAGTCA 34762 24 100.0 38 ........................ TTCACTGTCAAATTTGTCTAGCAGTTCTTTTGCGACTT 34700 24 100.0 35 ........................ ATTATACCACGCCAAAGAGATGGCGTGAGGCGATA 34641 24 100.0 34 ........................ TATTTGAAGGCTTCCCTTAGGGCGTTCTTTAGCG 34583 24 100.0 35 ........................ GTTAAATTCGGCGCCCCAGTAGAAGTCTTTCTCGC 34524 24 100.0 38 ........................ CTATGTGTTGATGAGAGCACAGCTGGGCATGGAGCGTA 34462 24 100.0 35 ........................ AGATGTAGAGAAAACGATCGATTTAAGGCATGCGA 34403 24 100.0 35 ........................ AATAAATCAATCCTTTTTTTAAGGTCTTTCCAAGA 34344 24 100.0 40 ........................ TCAACACAAGGAAACACTTACAATTGGTATGAGTATGAAG 34280 24 100.0 34 ........................ CACTAGACACTGCAGGGACAGATATCAAAAACTT 34222 24 100.0 37 ........................ GTGCCCCTGTCTCCTGCAGTTTTAACGCTAAATATCT 34161 24 100.0 36 ........................ ACCTATCACTTTCCTTGCGAATTCAACCAGTGTTAA 34101 24 100.0 37 ........................ CACCAGCTGTGATGACATAGTCTTTGTCCAGTAATGG 34040 24 100.0 34 ........................ TTCTTCATAAGGATGTATCTGTACCAGTTCACCA 33982 24 100.0 36 ........................ GTCTTTACAGAACTTGGGGCGAAGTAGTATCCCGCA 33922 24 100.0 37 ........................ GATGAACTCGCCTGTGTTACTTGATGTGTATAAGGAA 33861 24 100.0 36 ........................ AACTCTGAGACTGAGGTTCTTTTTGTCTCACTAGAT 33801 24 100.0 35 ........................ ATAGGCTAGAAGCTGCAAAGAGGCTGGGCTGGAAA 33742 24 100.0 34 ........................ TACTGCAAGATCTACATTATAGTTCAATGATTTT 33684 24 100.0 37 ........................ ACGAGTCTCTTTATCAATATAGTGATGTTATCTACAT 33623 24 100.0 36 ........................ TTTTTTGCTTTTAGCTTTTCGTATTCTATTAATGAT 33563 24 100.0 37 ........................ AGTGGCTTAATGTACCTTTTGGTACTGACTATCCAAT 33502 24 100.0 34 ........................ GCTGATAGATAAAGATAAAATAAAAATAGACTTT 33444 24 100.0 37 ........................ GTCTACTTTAAGTGAACTTTATTGTAATCGTATCAAA 33383 24 100.0 33 ........................ TAAGCGTCTAAATAAGTTACCGACAATTGTTAT 33326 24 100.0 35 ........................ ATTGTTGAGAGATGCTACTTATGAAGAAAATGGAA 33267 24 100.0 38 ........................ CTTCATAACTCAACAAAACAAATAAGGTATGCCACTCT 33205 24 100.0 37 ........................ CTTAGCGTAAGAGAGCGTATATTATGCAGCGTATATT 33144 24 100.0 37 ........................ AATTTTCAGAGTCACTTACTTGGAAATTTTGTCTCTC 33083 24 100.0 36 ........................ CAAAAACTGCCGTTTAATGCGCCACTTCTAGAACAA 33023 24 100.0 35 ........................ TTTTGAGAATAGAGTCTATGAAATCTCCTTTTATT 32964 24 100.0 36 ........................ AGGTTCACTCACCCTCGCCTCGCAAGATATTCCAAA 32904 24 100.0 39 ........................ ACAATTCTTTCTTTTTTTATAGCTGTTGTACACATTCCT 32841 24 100.0 35 ........................ TAGTAATATCTAGCGACTTCCATAATTGCTGATGC 32782 24 100.0 35 ........................ ATTATAAAATTGATGTATTATACATTTGCAGAAAT 32723 24 100.0 39 ........................ CGCTATTCTCAAGTACTCTGCGATCTCGCCCTCTGAAAG 32660 24 100.0 38 ........................ TTCATATCGCTCTTTTGAATACTTCATCAATTCTTGTT 32598 24 100.0 34 ........................ TTTTATATTCTGTTGTTCATTTTTTATATCATTT 32540 24 100.0 35 ........................ ATATTATTAGGAATGACAGCCGGAGCTACTACTGT 32481 24 100.0 35 ........................ TTGTACAAAAAAGCTGAATTTAAGCAAGTCGGAAT 32422 24 100.0 36 ........................ ATTTAGTTTGAATATTATGAGTAATTGAGAGTTGGT 32362 24 100.0 37 ........................ TTGCTACAGGAAATGGAGAAGGTGAATATCAGGGAGG 32301 24 100.0 38 ........................ TTTTATCTTCAAAGAGTTGAAAAAGAGAGGGTTAGATA 32239 24 100.0 37 ........................ CTTTCTTCTTCATCTTTATCGATCAAAATTAGCCTTA 32178 24 95.8 37 .C...................... TTTATTATCAAGAGCATTAAGTAATTTTGGAAGACCG 32117 24 100.0 37 ........................ TAATAACTCTCCTACCTTTTCTATTTTTAGCATTTGG 32056 24 100.0 37 ........................ TATTTCGTAATCTTCTATAAGTTTTGAGTTGAATGGC 31995 24 100.0 34 ........................ GTATAGTACTGGTGTATTACTTCCAGATATCCCT 31937 24 100.0 35 ........................ CACTCTCTTCAATCCGATTATATCAATTTACTACA 31878 24 100.0 37 ........................ GATTACTGCAGTGATGATGAAATATCGTGCTAATGAT 31817 24 100.0 36 ........................ GTTGTAGTCATTCCAGTAATGACTAAGATATTGTGT 31757 24 100.0 37 ........................ TGTAATACAATATTACGCTAGCAATACAACAAACATA 31696 24 100.0 35 ........................ ACACTCGCCGACTCTCTCTCATTTATTGCGAGATA 31637 24 100.0 35 ........................ GTGTTGTTCGAGACTTCTACTGCCATTAATATTAG 31578 24 100.0 36 ........................ GATTACTTTATGCTTTATTCAAATATAGAATAAAAA 31518 24 100.0 35 ........................ GTTGGGTATTTAAGCTTACGCATTATATTTTTGAG 31459 24 100.0 37 ........................ GATTACTGCAGTGATGATGAAATATCGTGCTAATGAT 31398 24 100.0 34 ........................ TAATATAGCGACCACAGAACTCTTGCTATATTTC 31340 24 100.0 35 ........................ CTCTCAAGAAATTCCAAAAGTTTATCAAACTCCTC 31281 24 100.0 37 ........................ TTTCTACATTATGTACTACCGATAAAACATGTGATCA 31220 24 100.0 37 ........................ TTCTCTTGGTTCAAAACCACTTAAATCTTCGTTATTT 31159 24 100.0 36 ........................ TTTTCATCAACATCTTGACTCCGGTATTCGACATCA 31099 24 100.0 35 ........................ AGTGGTCAGGGCTAGATATCTGCCCACTACCAACT 31040 24 100.0 36 ........................ TATCAAGAAAAATAGGGCTAGCCCAATTCCAATGAT 30980 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================== ================== 133 24 100.0 36 GTAATAACGACAAGAAACTAAAAC # Left flank : CACNGGTATTATGTTATTTCCTTCCGTATCCTTACGTAAAATGGTTTTAGGGTTACCCTGTGTAGCCTAAAACTCCCTTCCGTACCTAAGGGCACAAAATTGACAATGAAGGAGAGAAAATATTTATAAACCAGGAAATAAGAATGTAAAATTGATGGAGGCAAGGATCAGTAATAACGACAAGAAACTAAAACAGCTCTTTCGCACTGTTATTTTACAATTTACACGTGTAATAACGACAAGAAACTAAAACGCTTGTTGATTTGGGCCCATGCGAGGAGGATTAAGTAATAACGACAAGAAACTAAAACTGATATTGTATCGTTGTAGTTAGTATTGTCCAGAAGAAGTAATAACGACAAGAAACTAAAACAAGAACTCCCGGGAGCCCTGGTGGTATGCCCGAAATTGTAATAACGACAAGAAACTAAAACANGAAGTAATAACGACAAGAAACTAAAACAAGAACTCCCGGGAGCCCTGGTGGTATGCCCGAAATT # Right flank : TCCATGTAAAATATCATGACACATATATTAATTTTGAAGCAAAATTTTACGTCCCAAATGTTATCGCTTATGTAGGGTTATAACGTGTCCCTTGTGTGGTTATGAGAATCAGTACTCATACAAAGTTGATTACCATATTGATCCAATCTCGGCGGAGGGGGAGTCTGCAACGTTAAATGTTCCCTCCTTCAACTCTGCTGTAACAAATAAGGAAAAAGTTTTTATTCTCTCAATATTTTGATTTAGTTTATGAGGATAATTGACGAGACTAATTGACATAGTGAAGAGTAATCCGAAGATTCTCCTGTATTTGCTGCTTCCAGCGTATGTACCCATTTTTCTCACCGTTATAGCCATTATTGAAGCGTTGACGGCAGTCCCTCATTTAAGTGAAGTAACGCCTTTACTAATTATCACACCTATAATAACTGTGTTCTTCGTTCCCGCAATAGCATTCTCGTTGTACCCAAATCTACCTCTGGAGGTGGTAAGAACTGGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAACGACAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 51886-56576 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPRC01000011.1 Sulfolobus acidocaldarius strain GG12-C01-01 GG12_C01_01_scaffold4_last, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================= ================== 51886 24 100.0 38 ........................ CTCTAAGAGGATCTTTGCCAGGGCATAGTAATAAGCTG 51948 24 100.0 35 ........................ GAGTTCAAATAGAATAATGGAACTGAAGATACATT 52007 24 100.0 36 ........................ GAAGCAGAAATTCGATGAGGCATTAAACGCATTAAA 52067 24 100.0 38 ........................ AACAGCATTAATATTCCGAGGAGGATTGCTAAACCGTT 52129 24 100.0 36 ........................ ATCTTCTCTGTCCTCTACTACTTTCTGCTCTTCTTT 52189 24 100.0 36 ........................ TGAAAAGTTCATAAAAAAGTACCCTAACGTAGAACA 52249 24 100.0 34 ........................ AATTTTATGATATCGCTTTTGTTCAAGGAAACAT 52307 24 100.0 39 ........................ AATTCTAAGTGCACAAGAAGGACTAGAAGAGGCAGGCCT 52370 24 100.0 34 ........................ TAATGCCCAGTAACATAGATGCCTCCTTGATTAT 52428 24 100.0 35 ........................ AATTTGGATTGACGTCACCTCAAGATCTATTACCT 52487 24 100.0 36 ........................ ATATTTAAGCCTTACTCTTTACATTAAAAGTAACAA 52547 24 100.0 35 ........................ TCGACGTTAGTCTTAGATTTTTATCATTTTTAGGT 52606 24 100.0 34 ........................ TTGTGCTCTTTAATGTCAAACAGTGTGATCTATT 52664 24 100.0 35 ........................ ACAGTGCATGAAGTAGCATCATATGTCGTAAGTGA 52723 24 100.0 36 ........................ TCTCTGGGTTAAGTGCAAAGAGCACTGGGATTACAA 52783 24 100.0 34 ........................ CAACAAGGCTGAGAAGATAGCAAAGAAGCTAGTA 52841 24 100.0 38 ........................ TACAATAATTTCAGATTTCCAGTAAATGATACAAATTC 52903 24 100.0 36 ........................ TTGTCATTAAACTGACAACTTTGTCTCTGACCCAAA 52963 24 100.0 34 ........................ AGTAGCGGTATACAAAAATGTATTTGTTGTGATA 53021 24 100.0 34 ........................ TGGCTCACAGGCATTAATACCTGCAAAGCCTAGG 53079 24 100.0 39 ........................ AAAAGTTTGCCAATTTAGGTGCTGTGCAGGAAGCATTTA 53142 24 100.0 34 ........................ GAATAATTGTAGATCAGCCATCAACTTCCACACG 53200 24 100.0 36 ........................ AGAAAATGAGTAGTGAGATAAAGACAAAAAATAAGT 53260 24 100.0 39 ........................ AATTTCTATATAATCCAAGAGACACAGAGAGGTTTCTAC 53323 24 100.0 37 ........................ TACATTACTTTTAGAAATATAGTATGAGCGTAACATA 53384 24 100.0 33 ........................ CAGTACACAAAGTGGATAGGAAAAGTCAACAAT 53441 24 100.0 36 ........................ ATCGTATATTATATTGGGGCAGAAAAAATGAATGAT 53501 24 100.0 34 ........................ CAGGTTCAATTTCAGTAAATAATGGCATTACAAT 53559 24 100.0 38 ........................ AACATCAGACTTTTGCACTTTTATTAGAAGGCTTTGGA 53621 24 100.0 34 ........................ GATACATTGCATATATTGGCAATCAGCAATACAA 53679 24 100.0 36 ........................ ACTATATATTGTTTGGAGCTTATCATAAACTTCATC 53739 24 100.0 34 ........................ CTGAATAGAGAGATGATAGAAGAAACGGTAAGTA 53797 24 100.0 39 ........................ TCAGCCTCTAATTCTGCTGCAACTTCCATCAATTTCCTT 53860 24 100.0 39 ........................ ATTAATTCCAAAGGACATTGAGAAGAAATTTGGCTTAAA 53923 24 100.0 37 ........................ ATATGAGCAACAGCAACTCAAATCTTTATATGAAGTC 53984 24 100.0 34 ........................ CACCAAAGAGTTTTTGTCCAAAGCCTTTTATGGA 54042 24 100.0 37 ........................ CAGTCTCAATGTCTTTATGAGACAATTCTATATCCAA 54103 24 100.0 36 ........................ GCACTTCTACTTGCTTAACGCTATAGCAAGCAAGAA 54163 24 100.0 38 ........................ GTTCATCAACCTCATGCTGAGTAAGACTATTAGTATGT 54225 24 100.0 36 ........................ CTCGTATTCGTAAAAGCCCTCGTGGGTGGTGACGAT 54285 24 95.8 35 .......................A CTTTACAACTAATTTTTTCAGGAAAACAAATTGAA 54344 24 100.0 34 ........................ TATGTCTTAGATAGTTGAAAAAGCTAAAGCTTTT 54402 24 100.0 36 ........................ GAATGTGTCCCCCTAGAGGTTTTCACCAAACAACCA 54462 24 100.0 36 ........................ AAAAAACCTTTAACCTCTATCGAATGCTGTCAAAAA 54522 24 100.0 35 ........................ AACGTTACGACCACTACTACTCAGAAGAAGATAGT 54581 24 100.0 37 ........................ GAGGGATGAAGGCAAATCAGTATCAGCAATAGTAGAG 54642 24 100.0 35 ........................ GAAGTAGAACAGCTGTTTTTCAGGATTGAAATTAT 54701 24 100.0 39 ........................ AAGAGAATACTTTCTCGCCTCAGCAAGAATCGTATCAAT 54764 24 100.0 35 ........................ GTATGTGGGAGAGCTTTATGAGTGGTAAGACACAC 54823 24 100.0 33 ........................ ATGCAGGTACTATACTGAGCCTGATGAACAGCA 54880 24 100.0 34 ........................ AAATTTAAGGAAAATGGAGTGTATGTATATAAAT 54938 24 100.0 35 ........................ CTCAATTATTTTCAATGCTTTTTCTTTTTCGTTGT 54997 24 100.0 36 ........................ ACATCAGCACTTATGGATACTACGCCATGCTCATCT 55057 24 100.0 35 ........................ ACTATTACTTTTGAAAATATGTAGATAAGACTGGT 55116 24 100.0 34 ........................ TTACAGTTGTTCCGTTAGGAAGTATATAGTTACT 55174 24 100.0 37 ........................ AAAATAATCATAAAACCCGAGCATTACGAAGAATTGA 55235 24 95.8 37 .......T................ TGTAAAGGACTTCTTAAAAAGGTTAGAGGGGTTTCTC 55296 24 95.8 35 .......T................ GTAATTATTCTGATGGGTGCTATAATCTCGATGGC 55355 24 100.0 35 ........................ AGCGATTAGTTTAGTCGAATTAGCTATTGCGACTT 55414 24 95.8 34 ...........G............ ATGGGATCCTGATAATTCGGCATCAGCACAATTC 55472 24 100.0 35 ........................ CTCTTCATTTGTCTCGTGAAATATAGGGTTTTTCA 55531 24 95.8 35 ...........G............ ATAGGGTAGTTCACAAAGAGCCAGCCCTCGTCAAC 55590 24 100.0 35 ........................ CTTTACGTAGTAGTTATAGAGCTTCGTTACGTGCT 55649 24 100.0 38 ........................ CTTGAACCATTGAACCTGCGATTGCAGGGATTAAGTAT 55711 24 100.0 36 ........................ GCTGACTGGGGGTGAGCCAGAAATGAAGACTGGAAG 55771 24 100.0 36 ........................ TAAAATTAGTCTGCTGGCCAATTAAGAACAAACTCT 55831 24 100.0 35 ........................ GTGCAACAGGGTGAAACATAGATGAGCACATTTTT 55890 24 100.0 35 ........................ ATTATGCTCATTATCTCTGATTTCGACCTTAAAGC 55949 24 100.0 37 ........................ CTACATTGTCCTGAAGTCCTAACTTCTTTAATTCCTT 56010 24 100.0 39 ........................ TTTTTATTTTCAGTAGCTATCACCATAGTAGCCCTAAAA 56073 24 100.0 37 ........................ TACTCCCCAGGCTTACCCAGCAAGAAGAGGAAGCCTT 56134 24 100.0 35 ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 56193 24 100.0 35 ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 56252 24 100.0 36 ........................ CATTTTAGCTCAAGCATCACCAGCATCAATTGAAAG 56312 24 100.0 36 ........................ ACCGTTCCGTAGATATTATTACTGTAACTCCCTCCC 56372 24 100.0 37 ........................ ACTGGGCTCCCCGTGATCACTCCAGGTCCTTATGTTG 56433 24 100.0 36 ........................ GACGCTAAAAAGCAAGAACAACAATCACAACAATCG 56493 24 100.0 36 ........................ TTTCTTAGTGAATCCCATGTACGTATATCTAATTTA 56553 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================= ================== 79 24 99.7 36 GTAATAACGACAAGAAACTAAAAC # Left flank : CCACTAACTCTAGGTCCAGACTAGACACAGTTAAGTTCTTTCCAACGGACCATGTCATCTGAAGATCTGAGCCTTTCCTCATAATTGTAGCGTTTTTAATCACTAGAATGGACATAATAGAAATTTTTCTCTCAAAAATAATAAACTTTTATCATAATTAATAAATTTTGGGTATTATGTTATTTCCTTCCGTATCCTTACGTAAAATGGTTTTAGGGTTACCCTGTGTAGCCTAAAACTCCCTTCCGNAGATGTGTATAAGAGACAGAGAATGGACATAATAGAAATTTTTCTCTCAAAAATAATAAACTTTTATCATAATTAATAAATTTTGGGTATTATGTTATTTCCTTCCGTATCCTTACGTAAAATGGTTTTAGGGTTACCCTGTGTAGCCTAAAACTCCCTTCCGCACCCCAGGGAACAAAATTGACAATGAAGGAGAGAAAATATTTATAAACCAGGAAATAAGAATGTAAAATTGATGAAGCCAACGATCA # Right flank : CACTGTAACTATTTAAAATAGAATGATGAGAGAATGACAAAGCCTTGCCGTTTATGGCGAGGTAAAGGTTTCTACTTACGAGAGAAAAGTTGTTATTAAGAGGAAGCCCGTAAGAGCATGGGTCAGTCAGTGTGTGTCCCTCTTTCCTGGTACATATCCCTGAGTCTCGAGGAGCGTGGAGTTAGGGCAACTCCACCAAAGGGATAGGGGTTGAGTGGCTGAAGGCTCAGCCAGTGGTCTACCACTGAAAGAGTGGAGCGGAGCGGGCTTCTGAGCCCACTAGCTATGAAGTGATAAAAGTGAAGGTGATAAACTACAGACCTGTGAACTGCCCTAGGTAACCCTCACTCTTTAGAGCGAGGAGGAAGTCAGTATCACACCAGATGCTGTGATGTCTGTTGCAACCTTAATTGCAATTGTATCCGACGAGACTGTCATGGGAATCATTCAAACTTAGAATACATAGATCCTCAATTCATCCTCTCCAATCATATGTCTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAACGACAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //