Array 1 95749-96565 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXLO01000009.1 Clostridium massiliodielmoense strain MT26, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 95749 30 100.0 34 .............................. TAGAGATAAATTTAGCCTTTGCAGATTGTCCCCA 95813 30 100.0 36 .............................. AACATTCGTAGGTGCTCCCATTAAAAACTATCCTAT 95879 30 100.0 36 .............................. GGAGATATAAAAATTTTTGAAGTGTTTCCACAATGA 95945 30 100.0 37 .............................. CTCATTATTTTCAACCTTTTCAACACACATAATTTCG 96012 30 100.0 36 .............................. TAAATTCAGTAAATGACAGTGCTGCACAAAATGTGC 96078 30 100.0 36 .............................. TAATAGCACTAAATAGAAATTTTCTTACATGATTCT 96144 30 100.0 36 .............................. GAGAATTTCTTAGACGCTTTCCAACTTTAGGACTTT 96210 30 100.0 35 .............................. TTTTGATTTAATCTCTAAAAAAGTGTATCGAAAAG 96275 30 100.0 36 .............................. AAATAAAATTAAAACAAAAAAGAATAGTAATTTAAT 96341 30 100.0 34 .............................. GCGTGATGCAATAAAACTGTTTTAGGATTGTTTC 96405 30 100.0 35 .............................. CATCTATAGTTTTAATTATTCTTGTGTCAGGTAAC 96470 30 100.0 36 .............................. TTTTCTAAATAAATCTAATATAGATTGTTTTTCAGT 96536 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 100.0 36 GTTGAACAATAACATAAGATGTATTTAAAT # Left flank : TTAGGCCTAGATAGATGATCATCAAATACAGAACTCGGCTTATAGACTTATCTCGTATGTGAAAACCACCAGGTTAATGCCTGGTGGTTTTGTTTTTTTTGATACCAAGTTTGTAAATCAATAATAAAGTTATATTTAATAATCAATAAATAAAGGACATAATAATTAATAGTTCAAAATTAATAAGGTTTAATATGTCAAAAATATTTAAGTGGAATACAATGGGTAAATAAAAAAATATGGAGACCAAAAAATACTTCAAAAATATTTTCATAATACTATTGATTGAGTTACTACTAAATAATAATAAATAAGGCTATTGTTTTCCCAATCGATTCATAGAAGTAATATACCTGAATCTATTGATTTTACAAGGTTTGTTAAGGGTTTGTTGCAAAAAATTTAAATTATCAAAATTGGTTGGGAAAAAACTTATGAAATCCTTTATTTTCAATGGGTTTAGGGGTATAATAAAAATAAGAAATGGCTATTTTACTATG # Right flank : TGTTCTATAGACAGGTATATTTTTAGCTTTTAGTCCGGTTAAACAATAACATGTATTTAAATGATATAAAATGCATAGTAAATTGCACAAATCAAATTTTTTATTATATAATTATTTATAAAATCATTATCAATAGAAAGGAGATAAAATGAAAAAGATAATAGCTATTTTTTTATTTATAATAAGTATAGCCTCATTACTTATTTCTATTAAATTATTTTGGAATATGGGAATATTTGTAGATGAGTATAACTTAACTCCTAATATTGTGAATGGAGGTCAGTTTTGGTCATCTATGGATTGGCTTAGATTACTATTACTAGCTATAATGAGTGTATTGTCCATAGTAAATATATCTTTAAATAAAAATAAATAATAGTCTAACTAAAAAACAAAAGAGAAATAGCATTAATAAAATCCTAATGATGGGTAATTTGATGTTCATATAATTTAACAGAATGAGGAGAAATTAAGATGAAACTTTTAATAGAAAAAATTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 568050-567626 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXLO01000009.1 Clostridium massiliodielmoense strain MT26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 568049 29 100.0 36 ............................. CTGAATACTACCAAATCATAGTCATCTGTGAAATGT 567984 29 100.0 37 ............................. TATTAGCAATAGATATATCTTTAAGATTTTCAGCGAA 567918 29 100.0 37 ............................. ATTACATTATTAGTAGTAGAGGTATCTGTGGAACTTC 567852 29 100.0 37 ............................. CCTTTCCAATATAGAAATCAGATAATATAAAGCTTTC 567786 29 100.0 37 ............................. ACTGATATAGTTCGTATGGGTGCGTTTCAATTTGCTA 567720 29 96.6 37 ...............A............. AGTTTTACATTGTGAGTTGGAATAATTGAAATTAGAT 567654 29 96.6 0 ...............A............. | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 99.0 37 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : ACATTTTATAGGAGATGAAAAATATAAACCTTTAAAAGCGTGGTGGTAATTATGTTTGTTATATTAACTTATGATATTGAAGAAAAAAGAATAAATAGGGTAAGAAAAACATTAAAGAAGTATTTAACTTGGACACAAAACTCAGTATTTGAAGGAGAAATAACAGAAGGGAAATTGCATAAGTGCTTATCAGAGATAAATAAGAATATTGACAAAAAAACCGATTCAATATACATTTATAGAGTGAAGATGAGTAAAAATATAACGAAAGATGTAATAGGAATAGAAAAAAGTTTTGATGAACTATTCTTATAATTTGCAGTATATCAAACAAAAGTTCTTACAGTCTCAAAGTATTGATATATCTAAGGTTTAATGGAGTTTTTTTATAATTCAAAAAACACTACTGAAGGTTTACTGCAAAATTGATAAAATTAGAGTTTAAGCCGTTTAGCTTAAACGCAGTAATACCAATGTGTTTAGGTGTTTTCAATTTTAGG # Right flank : AAAGATATTTATTATAAATGCGTACAATTTCAATTGTAAAAGGCACCTTTCAGTATTTTGTATTCATAATTAAACCAATAAAGTTATATATTATAAACTATAATTAATGGTTAAATAATAGATCTCAAAATAATATATAATATAATGAAATAAATTATACATTAGGAGCTGAATGAATGGAAATTGAAATAAAAAGCATACTAAAGAAAATTATTGTTAAAGATGATAAAGTTAAAGTAGAAAGACTTAAAATTACAAATGATGAAATAACTGAAATTAGATATCAGATGGCAACTGTATGAATACAAGGTTTTAAACATTTTGTACCGAAAAAGATGGTCAAAAGGTACATAGTTTAAATGATGCTACATTAAATAAAAATAGCATCACATTTTACTATGGTAATAATGAAAAGGTTGAAGAAATTCTAAATCACTTTTCTGAGAAGGTGAAATTAACGGAATTTACCGACATCAAAAAAGAAAAGAAGTCAAAAACTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : GTTTTATATTAACTAAGTGATATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 580819-581931 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXLO01000009.1 Clostridium massiliodielmoense strain MT26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================================================================================ ================== 580819 29 69.0 204 TGAA.....G..G.....T...AT..... AGAGTTAGATTACATAAATTTGCAGTATACAAAACAAACGTTCTTATATATTAAAAGCATTGATTTTCCTAAGGTTTAATAACATATTTTTTAAATTCAAAAAACACAACCGAAGGTTTACTGCAAAATTGGTGAAATTAGACTTTGAGCCATTTAGCTTAAACATAGTAATACCAGTGTATTTAAGTATATTTGATTTTAGGG 581052 29 100.0 37 ............................. TACTATATTTTTTAGCTCTAAGACATGGAGCTACTAT 581118 29 100.0 36 ............................. TACGATTTGGCACGTTTATTTAGTACCTAAGCATAA 581183 29 100.0 36 ............................. TTGCAACAAATGTTCAGATTAACAAAAGATGAAAAA 581248 29 100.0 38 ............................. GGTAGACCTGTAAAAGCTTCAATCATTTAAACACCTTC 581315 29 100.0 37 ............................. AAGCCATTTAGCTACTAAAAATACAACTCCAAGTCCA 581381 29 100.0 39 ............................. TTATTTTTAATATCTTCATTTTCTTCTTTTGCATTTTCT 581449 29 100.0 36 ............................. CTGTCTTGTTTTTCCCCACAACCATTTGGCTACTAA 581514 29 100.0 36 ............................. ATATACAGTCGAACACAGTGATTTCCCTACATGTTT 581579 29 100.0 37 ............................. TACGACAAGTTGGTGAGATATTAGACGAACCATCAAG 581645 29 100.0 35 ............................. CAAGTAAACAGATCTCAACTGAATAACAATTCTAG 581709 29 100.0 36 ............................. TTTGAATTTATTCGTCAAATCAGACAACATAGGCAC 581774 29 100.0 36 ............................. TGACATATTCCATGATGAGATTGGTTTATATTTCGC 581839 29 100.0 36 ............................. TATCTTATAATTGTTTTTCTCTTTTCTCTAATACAA 581904 28 79.3 0 ...............A.CAC..-...T.. | ========== ====== ====== ====== ============================= ============================================================================================================================================================================================================ ================== 15 29 96.6 49 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : ATATCTAGCTATTACTCCAAGAGATAATGCAATGAAAGTAATTGGATTAGATAATTTATTTTGTGGAGGAGAAAAATCTGGACTATTTGTAGGACATACGGAAGCAATATCTACAGGATCTCTGGCAGGAGCTAATGCTGTAAGACACGCAGCAGGTAAAAACATGATTGTGCTTCCAAATGAAACAGTAATCGGAGATATTATTGATTTTGCAAATAAGAAATTTTTAAAAGATAAAGACAAAAAAAGTAGATTTACATTTGCGGGATCAATATACTTTAATAGAATGAAAGAAATAGGACTATATAGTATAGATAGCAAACAAATAGAAGACAGAATAACAAAACTTGGTCTAAAAGGAATATTTAATGAAAAAATTATTTAAATAATATAGGCACCCTAAAATAAAGTGCTCCTTGACAAGTATACAGTGGAGCACTTCAAAAGGTGTCTTTTATTTTTTATAAAATTTCTTCTAAATAAATAACTATCAATTACTA # Right flank : TTTCATTTAGTTTTTTTACTAATATCGTATAAAAGTTTTAATGGGTTGTCACATTAAAAAGTCTAGTGTGACAACCCATTTTAATAAATCTGTTTAACTTTATATTCTATCCAATAATGCTGCTCCAATGATTCCAGCATCATTTCCTAACTTAGCTTTTTCTATTTTGCAAAGTTCTAGACCCTTAAATAGCTTATGTTCTTTTATATATTTTATTAGTCTATCCATGAATAAGTCGGAACCTGCAACTACTCCACCACCTATTGAGATAACATCTAAGTCTAATACATTTATTATATTATTTATTCCAGTTCCTAGGTATTCTATAAATCTATCTAGTGTAAGATTTCCAACCTTGTCCCCTTCTCTTGCAGAGTCAAACACAATTTTTGCATCAACTTTGCTTAAGTCTCCTTTAACTTTATCAGTTATTATGCTTTTTTCTCCATCTTTTATTAATTCTTGAGCATATTTTATAATTGCAGTAGCAGATGCAAATG # Questionable array : NO Score: 4.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-1.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [9-9] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [83.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 56384-56611 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXLO01000007.1 Clostridium massiliodielmoense strain MT26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 56384 30 96.7 36 ............G................. AATTAATGTTAGAAGCAATAGTAATGTTATTTGCAG 56450 30 100.0 36 .............................. TGGACAGGGTAACGTACAGGAAACATCTTGTCTATG 56516 30 96.7 36 ..............C............... GCACAGCCTCTTTTTCTGATTCATTTAAATTTTTAT 56582 30 76.7 0 ..............C....AT..A..T.TA | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 92.5 36 ATTTAAATACATCTTATGTTAATGTTCAAC # Left flank : ATCAAGTGCATTTTTTACATCATGATCTTTTTCATGTTTTGCAAGAGCACAAGTTAAATCAACTGCAAGTTGTTCATAACTTATGGTTGTTTCTAATATAGTTTCATTTAATGGTCTTAGATTGCTTATCTTTTTTTGTTGTTGCTGCTCTATCCTTCTCATAAGAGCCAATTCTCGTCTTACATCATTATTATCACAATGACGTGAAAATTGATGTGAAAACCAGGTAGCTTCAAATTCTGTACCATTCATTAAAATTATACGTGTTTTAGTATATGGATCTACTTCATTTTTATCATACTTTGGAGGATATAATTTACCCCAATCTTCAATAGTAGATTCTATACTAACTGGTTTTTCTTCAAATGGATTTAAACTCATAAAAGCAACTCCTTTAAACATTATTAATTTATTAATTAATGTTCCTCTAATTATCCTTTTTATTCAATTGCTTATGTAAAGATTATACTAATTAAACCTTTAACAGATATGCTTAGAGA # Right flank : ATATACGAAATATAAATATATTTTAATATAAAAACATTGATTTTACTAGGTTTTAAAGCACTTTTTTAAATTTTAATGTAGAATAAATAAGATAATATTAGCAAATAATTTTTGACGTTTTTTTGACGCAATAGAATTGCTATCAACTTCTTAGATTTTTAGAAGATAATAAAAAACTCTAGGTTGACCTAGGGCTTTTTATTTGGGTAGTATATTCTATTAGTTACTTCAAAATATATATTCCCTCTGAAAAACAACTTAATCTTATATTTTTAAATCCATCTTTTAGAATTTGCTCTTTTAAAAGATAAACTTTATCAACATTTTTTGTTAAAATAATTAAATTGCTCCTATTAGTGGTCGCAATAAAAATATCATATCCAAAGCATATATTCAAAACCGGATTTATATATAGCATATTACTTTTACAATATAGATAACATAATAATATTTGCATTAGCACTACAGTAACTACCACATGCCTATTTCCCTCTTTGAAA # Questionable array : NO Score: 3.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTTATGTTAATGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //