Array 1 420667-418435 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031845.1 Riemerella anatipestifer strain RCAD0392 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 420666 36 97.2 30 ................T................... TAAAAAATAGAATAAGAAATATTCCTATCA 420600 36 97.2 30 ................G................... CATTTCAGAGTTGCAGATTAAATTGGTTGA 420534 36 94.4 30 .......T........G................... TTTAGCTTCATTCTCTGTACCTTTTAGAAT 420468 36 97.2 30 ................T................... AAAGGCTTATCGCCTCTATATTTTCAAAAT 420402 36 97.2 30 ................T................... CTGTTGTTGTAAATATAATAGGTCCTATTG 420336 36 97.2 30 ................T................... CCTTTTCCTCATCACCTTCGTAGATGCAGA 420270 36 97.2 30 ................T................... TTCATTTATACTTCTAGGTAACTTAGTTAA 420204 36 100.0 30 .................................... AAAGGAACGCTACTCGTTGTAGGAAGCACA 420138 36 100.0 30 .................................... TAAGATTTCTGGATTTTCGTATATGTTGCT 420072 36 100.0 30 .................................... TGCTTTGTTCTTCTCCTTCTTTTGTTGCCG 420006 36 100.0 30 .................................... AGCCACAGCGTTTGATGGTTCTACTGCTAT 419940 36 100.0 80 .................................... AGATCATGAAAACATTCAATTCTACCTTCCGTTGGGACTGCTCTCATTTTAGCTCACAGCTTTGTTGTAGTTTCAGCGGA 419824 35 86.1 80 ...C...A....AG..-................... GAGTTAAACAATGGCGTATTATTCGTCCAAGTTGGGACTGCTCTCATTTTAGCTCACAGCTTCGTTGTATTTTCAGCGGA A,T [419813,419820] 419707 35 83.3 81 ...C...A...G-.A.............C....... TTTTTTCACGAGTATCTGCTAAGTCTGATTGTTGGGACTGCTCTCAGTTTAGCTCACAACTTTGTTGTCGTTTTCAGCAGA A,T [419690,419703] 419589 35 86.1 81 ...C...A...A-.A..................... TTTATTTTGGTATTTTAAGTTGTTGTGAGTGTTGGGACTGCTCTCAGTTTAGCTCACAAGCTTTGTTGTTGTTTCAGCGGA A,T [419572,419585] 419471 35 83.3 82 ...C...A....AG..-.............A..... ATATTAAGGCTACAGCACAAAACACAGAAAGTTGGGACTGCTCTCAGTTTAGCTCACAGCTTTGTTGTAAGTTTTCAGCGGA G,T [419460,419467] 419352 35 83.3 79 ...C...A...G-.A.............C....... CCGTTTAGTTTACCGTCATCTGCTAGGTCTGTTGGGACTACTCTCATTTTACTCACAGCTTCGTTATATTTTCAGCGGA A,T [419335,419348] 419236 35 86.1 79 ...C...A.A..-.A..................... GCCGATTAAGTCCAGCTAATCGCCCTCGAAGTTGGGACTGCTCTCATTTTACTCACGACTTTGTTGTTGTTTCAGCGGA A,G,T [419218,419220,419232] 419119 35 83.3 79 ...C...A...G-.A.............C....... ATTTCCTATACTTTCTTGCATTGCTGTTGTGTTGGGACTGCTCTCATTTTAGCTCACGCTTCGTTATATTTTCAGCGGA A,T [419102,419115] 419003 35 86.1 79 ...C...A.A..-.A..................... GCCGATTAAGTCCAGCTAATCGCCCTCGAAGTTGGGACTGCTCTCATTTTACTCACGACTTTGTTGTTGTTTCAGCGGA A,G,T [418985,418987,418999] 418886 35 83.3 79 ...C...A...G-.A.............C....... ATTTCCTATACTTTCTTGCATTGCTGTTGTGTTGGGACTGCTCTCATTTTAGCTCACGCTTCGTTATATTTTCAGCGGA A,T [418869,418882] 418770 35 86.1 79 ...C...A.A..-.A..................... GCCGATTAAGTCCAGCTAATCGCCCTCGAAGTTGGGACTGCTCTCATTTTACTCACGACTTTGTTGTTGTTTCAGCGGA A,G,T [418752,418754,418766] 418653 35 83.3 80 ...C...A...G-.A.............C....... ATTTCCTATACTTTCTTGCATTGCTGTTGTGTTGGGACTGCTCTCATTTTAGCTCACGCTTCGTTATATTTTCAGCGGAG A,T [418636,418649] 418536 35 83.3 30 T...T..A....AG..-................... AATTTCTCATATCGTTATTATTTTACTAGT A [418526] 418470 36 88.9 0 ...........CA...T.C................. | ========== ====== ====== ====== ==================================== ================================================================================== ================== 25 36 91.2 55 GTTGGGACTGCTCTCACTTTGAAGGGTATTCACAAC # Left flank : TACCGTCTGCTGGCGTATATGACCGACCAAGACAACCCCAAAAACCTCTTAAAATGGGAAGTTCCCAAAGGGCAAAAGGATAAAATTCATTATATTAACCGAGCCAATGCCCAAGCCTTTCTAAGGGAGCTCCCAGAACTATTTTATGGGGAGGGCTGTGGGCTCTTCTTATCTGAGGAAGTCACCAAAAAGTTTTTTGAGTACCGTAGTATCGTTCATAAGCTCCTACTTGCAGAGCAAAACAGCACCGAGGCGGAGTTCCGACTAAAAAACGAAGAGGCGGCTACCAGAATGAAGGTGCTGCATCATAAGTTGAGCCAAAGCATTAGGCAATGCCTAAAAATAGAACAACGCGATTTAAAAGCGTTGTAAAGAAAAGCGTTCTTTGAAACATCGAGATAAAACAAGCACCCAAAAAAGACAATACCCTATCATAACAATAATGCACAGCATTTGAAGGGTATTCACAACACCAATAAATACAGCTTATTTGCTCCTAA # Right flank : ACCTAAGGGCATAAAAAAATCCCTGCTCTGTACGGTACAGAGCAGGGATTTTGCTTCCTATTTATTCTATTACAGAAAATACCTCACTTCCTTAGTACAGGCGAAGTCGGTTCCCTCGTACGAGGGAAGGCTCTTCTCCTTACCGAGAGAAGAGCCTTCGCCTTAGGCAGTGAAGTGTCTTCCTCTTATAAAGCGACCGCCCTTCCTTAGCATTAAGGAAGGGCGGTCTTTATTTAGAAGTGCCAAAAACACACTACACAATAGTAATAGGCGTGCTTAGTGTTTCGGTTCGGGGTTCTTTCAGTAAGGTAGTGCCTTTACTGCTTTGCGTGGTGATGCTGAGTTCATAGTTACCCGCTTCTAAATCTGTAGGAACGAGAATGAGTAACCTTGACGGCTCATTAAGGACAATATGCTCTGCTGAGAGTTTCACTTCTTGCTGAGTGTCTAAGTTTTTAAAGACAATACCGTTTTTAGGGTTGTCCCCATCTATTTTAATG # Questionable array : NO Score: 3.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:-1.66, 8:1, 9:0.27, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGACTGCTCTCACTTTGAAGGGTATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [59-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 1741884-1740682 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031845.1 Riemerella anatipestifer strain RCAD0392 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1741883 47 100.0 30 ............................................... CACATGGCGACTCTTCACATCGAAGTGGTC 1741806 47 100.0 30 ............................................... GCTGTTGGTGGCAACGAGTCTGGGCCTCTG 1741729 47 100.0 30 ............................................... TGGACACTGCCGCCCTGCAGCGCCTGGTCA 1741652 47 100.0 30 ............................................... GGCGGCGAAGGCGTCCTGCTGCTCGCGGCT 1741575 47 100.0 30 ............................................... CGCAGCGCCAGTGACATACCAGATGCCATT 1741498 47 100.0 30 ............................................... TTTCGGTTGCTATCCGAAACGATTCGGATC 1741421 47 100.0 30 ............................................... GAGGTGTTGTCATATCTCAATCTCGTCTAT 1741344 47 100.0 30 ............................................... TACTTCGTTTATTAGTTTTATTGCAATGTT 1741267 47 100.0 30 ............................................... TAGATACATCTCTTTATCTTCGTGTAAAAT 1741190 47 95.7 30 ........T...............G...................... GTCTTTGAGGTAAGGTTTTGTCAAATCCCA 1741113 47 95.7 30 ........T...............G...................... TAATGGAGATTATAATATCCAGATACAAAC 1741036 47 95.7 30 ........T...............G...................... TCTATCGAAGTGTTTAAAAACACTTGATTT 1740959 47 95.7 30 ........T...............G...................... GATATAGTATCAGATGAACCGACAACGGAC 1740882 47 95.7 30 ........T...............G...................... TGATTGACTCTATTTTCTCCTGTGCAGATA 1740805 47 95.7 30 ........T...............G...................... TTATTAAAAGTTTTCCGATACTTCCTATGT 1740728 47 93.6 0 ........................G..................T..T | ========== ====== ====== ====== =============================================== ============================== ================== 16 47 98.0 30 GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : ATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGCATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : GTTGCGAATTATCACAAAGATAGTGAAAATTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [4.87,4.91 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], //