Array 1 103198-102391 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHHM01000006.1 Erwinia psidii strain IBSBF 435 scaffold_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 103197 28 100.0 32 ............................ AGAGCAAGGCTGCTCAGTAAAAGGAGGAAGGC 103137 28 100.0 32 ............................ ATCAAAGAAACGGAGATTGCCAGAAACACCAT 103077 28 100.0 32 ............................ TTACGAACCATCAGGCGACCAATAACGCTGGT 103017 28 100.0 32 ............................ ATCATGCGGCCAGGCTGTCGGAATACCCTGAC 102957 28 100.0 32 ............................ AGCTCGAAACAGATTATAAGGCTGCTGATACT 102897 28 100.0 32 ............................ TGGATAAACCATAGTGAGAACAGTTGTTTTAA 102837 28 100.0 31 ............................ TTGCGCCTCGCAAACAGAAGGTGAAAAAATA 102778 28 100.0 32 ............................ GATTAGCAGAAGAATCTCCTTAAACATTAAAC 102718 28 100.0 32 ............................ TTCTTCATCTGTGGCTGATACGGCCTCATACC 102658 28 100.0 32 ............................ AACAGATTTTCAGATCAACTGCAGAAGCCATG 102598 28 100.0 32 ............................ TCCGGCGTTTCAGGTTTTTTCAGCTGCTGAAC 102538 28 100.0 32 ............................ ACAGCGCATCGTCAAAATATTGTTTTTTTATC 102478 28 100.0 32 ............................ CACACATCAAGACCAAAAGTCCCGCACGTGGT 102418 28 96.4 0 ......................C..... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCGGCACTTTCCCGTCTGGAAGCGCTCTCCTGGCGCAAGGGGTTAACTGATTATACGGATTACAGTGGTATTTTGCCGGTGCCTGAGACGGCACAGTACCGTATTGTTCGCCGGGTACAGTGCCAAAGCAGCGCGGAACGGCTGCGTCGGCGTTCGGTAAGGAAAGGCTGGTTAAGCGAAGAGGAAGCCAAGGTGCGTATACCTTACGCCAAAGAGCGGCTCTTATCTTTGCCGTATCTCCGGCTGAAAAGCCTTTCCAGCAGCCAAACCTTTCTGTTGTTTATTGAACAGGGGCCGCTGGTTGCTGAGCCGGTTCCCGGACGCTTCAGCGCCTATGGTTTGAGTTCGCAGGCAACGGTTCCCTGGTTCTGACCCTTTTTTCAGGTCTGTTCCTAACCTGTTGATATGTAGTGCCAGAATTGGATAAAGGAAAAAAGGGTTTTTTAACGGAATTCCCTTTTTTTCTTTTATTCGTAAAGCGTTAGGCTTAAAAGCTAACG # Right flank : ACTTATCAGGCAAAGAACCGGTAAATTAGTATGGTCCCGTACAGGCGGGGATAGTATCCATGCTCAGTACCGCCCAATAAAAACGATGCTGGCAGGACAGATGCGCCCCCTGCAAAATGCAACTGTACTATTACCGGATATCGTAATCAGCCCTCCGCTGGCGGGTATCTGAAAATTATCGGTCAGCTTTACTATTTGATCTTTTTTTTCTGATATACCTGAAACATAATTCTTAACTACCTGTGCATATGATCTGCTTTCCTCCTCTGTCTGGAAAAAAGGATTTTACAGGTTTTATTTATATATAATTGTCACTGTGGTAAATAGAATCTATTCAGTCAATTCCTGTCTGAAACGTGATTTTTAATATAAACCAATAGCCCCTTTTCAGGCCTGAGGATGATTTATCCTGTCAGGCATAAGTCCGGTCGCTGCTGATAATAGCGATGCGATTTTTCTGAGAATATGCGGAAAAAGAGAAAAGGCACATGCGGAATGTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 113718-113090 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHHM01000006.1 Erwinia psidii strain IBSBF 435 scaffold_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 113717 28 100.0 32 ............................ CTCTGCAAATTTACCGTATAACGAATTTAAGA 113657 28 100.0 32 ............................ ATGATTGCCAGTGTGCTGGCTGGGGTGATCGG 113597 28 100.0 32 ............................ GGGGTGAAGCAGACAATGAACGGACTGGAGAT 113537 28 100.0 32 ............................ AACAGGTCAACATTGCAAAGGTCGCGCATCAG 113477 28 100.0 32 ............................ TGTAGGGCTAGCCAGTGATTCCGGCGATCCAT 113417 28 100.0 32 ............................ ACAAAAGCAAGTCTTAATAAAAGTATCGCAGA 113357 28 100.0 32 ............................ GGCAGCAACACTAAAAATTTTACGCACTATTA 113297 28 100.0 32 ............................ CAGCTCCGCTCCGGTGAGCAGGGAGGCGACAA 113237 28 96.4 32 ...........................T CGGACGAATGGCCGGGGCATAAATTCGACCAC 113177 28 100.0 32 ............................ TGTACCCAATGTTGCCTGTACAGAAATACACC 113117 28 85.7 0 ............G........ACG.... | ========== ====== ====== ====== ============================ ================================ ================== 11 28 98.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCCGAACTGGCCGCGGTGGCGTCTCTGCTGGGCAAACTGCCCACGCCGGACGAATACCAGCAGTTTATGAACCAGGTCGATAAGACGGCGGTGGATACTTACCGTTATCTGAACTTTGACCAGCTGTCGCAGTACACCGAGAAAGCCGACGGCGTTATTTTCCAGACGGCGGTATAAGCCTGCGGGGTCTGGCAGAAAGTTCCTGTACCAGGAGCTTAAACAGCACCCTACCGTTGAAAATCCGGGAACCTGCGTTCCCGGATTTTTTTATCCCGGTTTCTGAGGGTGCCGCTGTCTCTGACTTCCGGTTGCCCACGATTTCTCGCCATCAGGGTATAGTTGCGCACTATAGGCAGGGGAGGATAACAGAACCCTTTTTTTTAGTCTCAACGTAACCGTTTGATATTTAATGCTGCTGGCAGATGCATTTAAAAAAGGGTATTTTAGCGATTCAGGTCAAATTTCTTTTTTTATCGGTAAGTTAGCCTTAAAAGGCTACC # Right flank : CCAATACACGGGCTGCTGCTGCCAACAGCCCGTTTACTGTCATTTTGCCGCAAAAATAGCGGTGAAAAAACCGCCTGTCCACGACCATAAACCCGACGTCTGCCGAAAAGCACCTGGCCATCAGGCATCATTAAACAGCGCTATACAGCATTAGCCAGCGAGACAAGGCTCCTGAACTTAGCTACAGGTGGCGTGATATTTTTTCCCACCCGCATTTTTTATGGAGAAAGCGTGGCAGGTTTTCAGGCGGGTATGCAGATCGGTAGCTTTGTATATGTACGCCGTCACATGCTGCTTGCCCTTGAAAGGCTCAACGCCACCAATATGCCACAAACTTTTTTTCAGATAGAGATTGGTGCTGCCAACGCCAGGATTACTCACGCCATTGGTGATGCTCTGCTCCGCTGACTGGCTCAGCGTCTGCTCAATGGTGGTATTTTCCCCATCGGTGGATTTGGTATCAAGCTGCGCCCGGGTAATTGGCGTCCAGCTGCTGCAAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //