Array 1 79340-78822 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXX01000008.1 Salmonella enterica subsp. enterica serovar Hadar strain BCW_2837 NODE_8_length_79369_cov_5.40983, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 79339 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 79278 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 79217 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 79156 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 79095 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 79034 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 78973 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 78912 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 78851 29 100.0 0 ............................. | A [78824] ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCTTCCGATCTTTCTGCGGCGAGCTGAAA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 30-728 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXX01000093.1 Salmonella enterica subsp. enterica serovar Hadar strain BCW_2837 NODE_93_length_18661_cov_4.14628, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 91 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 152 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 213 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 274 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 335 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 396 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 457 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 518 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 579 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 640 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 701 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCTCATCTCTGTTCTCCAGCGGTTTCTATG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17410-18660 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXX01000093.1 Salmonella enterica subsp. enterica serovar Hadar strain BCW_2837 NODE_93_length_18661_cov_4.14628, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17410 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 17471 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 17532 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 17593 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 17654 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 17715 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 17776 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 17837 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 17898 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 17959 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 18020 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 18081 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 18142 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 18203 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 18264 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 18325 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 18386 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 18447 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 18509 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 18571 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 18632 28 75.9 0 ................ATC...-.G.G.A | A [18646] ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : C # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12939-14129 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXX01000106.1 Salmonella enterica subsp. enterica serovar Hadar strain BCW_2837 NODE_106_length_14129_cov_4.17643, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12939 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 13000 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 13061 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 13122 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 13183 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 13244 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 13305 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 13366 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 13427 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 13488 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 13549 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 13610 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 13671 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 13732 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 13793 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 13854 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 13915 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 13976 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 14037 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 14098 28 89.7 0 ......................-.G.G.. | A,ATC [14116,14118] ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //