Array 1 163432-161937 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKJJ01000075.1 Salmonella enterica subsp. enterica serovar Paratyphi B strain 2012CEB2196SAL scaffold_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 163431 29 100.0 32 ............................. GTACGTCGAAGTATGCTGAATTACAGGAAGGC 163370 29 100.0 32 ............................. CCCGCCGTCTGTTTGCGGTTTTGAGCGCCCGA 163309 29 100.0 32 ............................. GCCGGTCGGCGGTATTACTCAATATTTATACG 163248 29 100.0 32 ............................. TTAGCAATAGGCTACGGCGATAAAACTTTTAA 163187 29 100.0 32 ............................. TTTCGAAATTCCTGCTCGATGTCGACCGCCGG 163126 29 100.0 32 ............................. GGATAAAGACGACGTTGAAGAAGCCGAACACG 163065 29 100.0 32 ............................. CTGCTGAGGGCGAATAACAAAATCATCAACCA 163004 29 100.0 32 ............................. CCTTGCTAGTGGGGAAGCGCTACGATTCACGA 162943 29 100.0 32 ............................. GTGAGCGCCGCCTTGGTACTGGCCTTTTGAGT 162882 29 100.0 32 ............................. GGTATGTTTCCGAAGACCTCGGCTGGCCTTTT 162821 29 96.6 33 ............T................ CAACGTTTCACTGTCGAGATAGCTATTGTCCGC 162759 29 100.0 32 ............................. GCAAACGAGTCTGTTTTGCAGACGTGTCTGGA 162698 29 100.0 32 ............................. CCCCGGCCTGATCTCGATCGGTGACGTAGGCA 162637 29 100.0 32 ............................. AATTTGAATGCACTGGTATTAACGACGAATAT 162576 29 100.0 32 ............................. CGCGGTCATACTTCAGGATCTGCTCTGTTGTT 162515 29 100.0 32 ............................. CCATTCTCGTTGTCGGTCATCTAGCGGTTGCG 162454 29 100.0 32 ............................. CCCAGTCAGGGGCGCGATATTGCCGCCGTGTT 162393 29 100.0 32 ............................. TATCGAGCGTTGTTTCGGTGCGGGCCTGAGCT 162332 29 100.0 32 ............................. AGGGCTACCCGGTTGCGCGTATTGATGCCCCG 162271 29 100.0 32 ............................. TTGTGCGGCAACGCCCGTTTTTATCGGTGGAC 162210 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 162149 29 100.0 32 ............................. TTTGCCGCTGCTCGGTGAGGGAGCGTTTCATA 162088 29 100.0 32 ............................. CGCAACTATCCATGCAAATATTTCCATTGCTA 162027 29 100.0 32 ............................. GCAGCACTGGCTGGAGTGGCTGGCGAAAAATC 161966 29 96.6 0 ............T................ | A [161939] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 179959-178710 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKJJ01000075.1 Salmonella enterica subsp. enterica serovar Paratyphi B strain 2012CEB2196SAL scaffold_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 179958 29 100.0 32 ............................. ACGCTGGCCGAAAACGGATTTTCAATCCGCAT 179897 29 100.0 32 ............................. TATTCATCTGCTGCCGCCTGGTTTGTTTTATC 179836 29 100.0 32 ............................. GGATCGGCAAACTTGTTTTAACGCCGGACAAC 179775 29 100.0 32 ............................. CCCCTTCTGATCCCCTTTCAATTTCGCGCTTA 179714 29 100.0 32 ............................. TATGATCCGCCATAGAAACAAATACAAAAATG 179653 29 100.0 32 ............................. CTGTTTTGCAACCGCATCCCCGGATTCGGGAT 179592 29 100.0 32 ............................. TTGCCACAACCACAATGGATCAGGAGCAATTA 179531 29 100.0 32 ............................. AATTATCGAAAGGAGTTACTCAGGGGGGAGAC 179470 29 100.0 32 ............................. CAGCGGAAGCGATCAGTGGTCTCGATACGGAA 179409 29 96.6 32 ...................A......... GGCTCAGGTTGATGATTCTCATGAGACACAAT 179348 29 100.0 32 ............................. GGGTGATCATGACGATCCAGAGCATATTGCCC 179287 29 100.0 32 ............................. GATTGAGAGAAGGGCTTGCTTAGCTTCCTTCC 179226 29 96.6 32 ..................A.......... TGGGGCTGTAAGGTCCGTTTAATATCCACTCA 179165 29 100.0 32 ............................. TTCGTTAATTATATTACAATACAAATCATAAC 179104 29 96.6 33 ............................A GCCTTCCGGTACGTCGTCATTTTCAGTCAGCGG 179042 29 96.6 32 ............T................ CAAAATTAATGTCCAGGACCTTATTAAGTTAC 178981 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 178920 29 100.0 32 ............................. GCGTTAGCGCGTTACATCCGGTTTGAGGCTGA 178859 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 178798 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 178737 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACATGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //