Array 1 64346-66579 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIOK01000003.1 Pseudoclostridium thermosuccinogenes strain DSM 5808 NODE_3_length_166874_cov_114.429_ID_15235, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 64346 32 100.0 35 ................................ TTTTCAAAAACATGAGTATAACAAATGGGCAAAAA 64413 32 100.0 34 ................................ CCAGATAAAAGAACTTAACCGTAGAATTTATGAT 64479 32 100.0 36 ................................ GCTACAAAACAGGAGGTAAGATAAATGCAGAAAACA 64547 32 100.0 35 ................................ ATGGAACAGCTTGAAGATTTGGAGCAAAGCGGTAA 64614 32 100.0 35 ................................ CCGGCGTGGATATGTCCCTGAAATAATTGTTAATC 64681 32 100.0 34 ................................ AAGCAAACGGATGAAATTGACGGCACAGTCTTTT 64747 32 100.0 34 ................................ TTTAATTGTTTATATTCCTCGCTTGATATACCAA 64813 32 100.0 35 ................................ CATTTAAAGCTGCTCTAAAACCTGTTCCATCCCAC 64880 32 100.0 35 ................................ TTTATAAGATCTGCCGTAAATCCGTTTCCATCTCC 64947 32 100.0 37 ................................ TGATTATCCTGTCAACTCCGATAAATGGCAGTATCTT 65016 32 100.0 33 ................................ TTCCTAAGCCAAGGGATGGAACTGCCAGAGAAT 65081 32 100.0 36 ................................ ACGCTAGATAGTGAGACCGGAGGGATTTTACTGAAT 65149 32 100.0 34 ................................ CGGGTATACCAAAAATCCAGGAGTAAAGCTGGTA 65215 32 100.0 34 ................................ TGAATTGTTTAGAACTAATTTATAGTCAGCTTTA 65281 32 100.0 34 ................................ ACTTGATATGCCGATATAATCAGGCCTACTTGAT 65347 32 100.0 36 ................................ TGTTATTTCTATAATACAATTCTTGCTTTGCTCTAT 65415 32 100.0 33 ................................ ATGTACAAAAAGGTACACTTACGGAGGAAGAGG 65480 32 100.0 35 ................................ TGTTATCCGCTTTTGCTGTTGATCTTGATTTTTGA 65547 32 100.0 35 ................................ ACATTCGCCATTTTGTACATTTGCGCATGGGCAAC 65614 32 100.0 36 ................................ CTGTTGTAGAACTTAAGAAAAGTATTAATGAGCGCA 65682 32 100.0 34 ................................ GGCAATCAGAGAAGCAGATGATATACATGCTGTA 65748 32 100.0 33 ................................ AACGCTCTCAAGCCAAGCATAAAAATCTTCGAT 65813 32 100.0 35 ................................ ATTGAATATGTGGAGCAGACACAACCCAAAAAGCA 65880 32 100.0 33 ................................ ACAGCATCATCTTGCAAAAGAGGGCGGCTTGGC 65945 32 100.0 34 ................................ TCTTTCTGAGGGCGATGTAACTAGGTATTTCATG 66011 32 100.0 36 ................................ GAGGATATTTTTATCCACAAACAATAATTATACAAA 66079 32 100.0 36 ................................ TAGTTCCAAAACATGTCACATACATGATTGTCTATA 66147 32 100.0 35 ................................ ATAAATGGACTTCTATAAAAACCGGGAACTCTATC 66214 32 100.0 33 ................................ GTCTATAATTACTACGATATACGGTAAAGCCCT 66279 32 100.0 35 ................................ AGCCTCAGCAGATTCTAAAGCACTCTCTCTTGCAA 66346 32 100.0 36 ................................ TGCTGTTGTAGTATTATACATTTTGGCAAGTTCGTC 66414 32 100.0 34 ................................ ACTGGTAACCTTATGACCCGGGGTTTGTCTATGA 66480 32 100.0 36 ................................ ATTGATAGGCTCATCACCGACAGCCTTCCGAATGTC 66548 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 34 32 100.0 35 GTCGCACCCTGCACGGGTGCGTGGATTGAAAC # Left flank : ATATCCACCATTTTTGATAAAGTAGAGGTGGTTTGCATGATGGTATTGATCACATACGATGTTGACACTACCACTTATGGAGGACAAAGACGTTTATATAAGGTTGCCAAAACATGTGTGAACTATGGACAAAGAGTGCAGGAATCTGTTTTTGAATGTGTGCTAGAACCTCATCAGTATATAGAGCTGAAAGCGAAACTTGAGAAACTGATGGATATTGAGAGAGACAGCATAAGGTTCTACAATCTGGGGAGCAATTGGAAACGTCGTGTGGAGCATCTTGGTGCGAAAAAACCTTATGATCCGGAAGGTGTTATAATCACTTGAGTTTTCCGCGGAACCCAAGTGAACATGTTTTTGCGGGGAAGTCGCGGAAGTCTGATTTTCAAAGGTTTCAGAGTCTTTTGCTAATTTTTTGAAAAGAGATTTTGCATCATTTTTTAAGATCCGCGGAAATATTGCATAGAAGTGCTGATATACCTGCTTTTGAATATAGTGCA # Right flank : CGTAGCTGATACCAAAGCTACGGCTTTGTCAATGAGTTGCATCTCGTAAAAGGTGCATAAATTTAAAATGTTGACAGCGTGAATATAATTGATTAGAATACATCGCAATCCCTATGGAATGTTGACTGAAATGTTATATAATGCAAATATAGAAACATGGGGAGAAGGTAAGCGATGAGCAAGGTATATGAATTTGAAGCTGAGATTAAAAAAGTGCCGGATATTGATGGTGCATATATTGAGATCCCCTTTGATGTGAAGGCTAAATTTGGCAAAGGGCGGGTATCTGTTACTGCAACCTTTGATGGCGAAGTATATCATGGCATGCTTGTGAGAATGAAAACACCATGCCACATAATAGGCATACGGAAAGATATCAGGGCGAAAATAAACAAGCAGCCAGGAGACAAGGTTTTTGTAACTATCAGGGAAAGAGAAGTCAAAAAATAGGAGGAAGTTTATTGGAAAGGAAAAGTCTGTTTCAGTGCCCTGTGTGCAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTGCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTGTACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 40444-40215 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIOK01000040.1 Pseudoclostridium thermosuccinogenes strain DSM 5808 NODE_40_length_40749_cov_151.239_ID_15309, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 40443 30 100.0 37 .............................. ATGAAGATATTTCTGAGGATGTGATATAAATGGCAAT 40376 30 100.0 36 .............................. GCGTAAACACTTTCGGGAAGGACACATAGCTTAACC 40310 30 100.0 36 .............................. TCATCATTTTTGTAAATATCTGCATCGATACAGTGG 40244 30 93.3 0 ...........G....A............. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 98.3 37 GCTTTAATCGTACCATGTTGGAATTGAAAC # Left flank : CAAGCTGCTGCACTTTTACGTGGCAACTTGCTGTACTTTTATTTTACAATACACAAAAATAACCCAATCGGACTCAGTTAGAATTTTTATGTCTCGGAAAAAAGATGGCTTTCAAAAGGCGTTATAGGCAGAGAAAAAATCCCAACTGATAACTTTATTCAAAACTTATGAAGAATATGGTACAATTGCTATTATAGAGGGAATGAAATCATGAAGGTACAGTGTTTTTTGCACGACTGGAGGTTCATTGCAAAAATAAGTGTTTTCGACACCGGAATGCCTTGAAATATGCGCATTTCCGTCGG # Right flank : ATCATAGTATCTGTTGAAACGTCAATTAATTCAGAAGGCTTTACTCTTACCACATTGTAATAAAGCATTTAATACTCATTTCCTGTTTTAAAGTCCTATTATCCTTGATATCAGCCATTTTACACCTTTGCAAATCATGGTTAACATCTGAAATATTTCGCACCCTTTAATACCCTATGTAATATATTGGTGGTGAAGGATAAACTCTTGAGGCTGAGCTGGTTGCTGTATAGTGAAATTCGGCTCATGTTCGTCAATTGTTTGCAGGAGGTGTTTGCGCTGGAATACATAGTTGAAATCAACGGCCTTGGAATGAAGTACCAGTCTTTGAACGGCGAAATCAATGCAATTGAAAATATCGACCTATCCGTAAAAAAGGGTGAGTTTATCAGCATTGTCGGCCCCAGCGGGTGCGGCAAATCTACGCTCTTGTCAATAATATGCGGGCTTCTTACGCCCACATCCGGACATGTACTGATAAACGGCAAGAGTCTGAGGGG # Questionable array : NO Score: 8.77 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAATCGTACCATGTTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 118307-118855 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIOK01000006.1 Pseudoclostridium thermosuccinogenes strain DSM 5808 NODE_6_length_127931_cov_146.771_ID_15241, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 118307 30 100.0 36 .............................. ATGGAAATAGTTGCTGAGGGTGAATTAGTAGAATTG 118373 30 100.0 36 .............................. CTTTAAGTTAAAGTAAAAGTTTTATCTTATAATCTC 118439 30 100.0 37 .............................. ATGAAGATAAATAAAGATGGTGAGGTTAAAAGACATA 118506 30 100.0 37 .............................. TCAACGACAAGCTTAATTACGTCATTAAAATATGCTT 118573 30 83.3 38 .C.......T.....TA.........C... AAAAAATAAGCCCGGATAATCCGGGCTATTTTTACAAA 118641 29 80.0 36 .....-.CA......T.C..A......... ATACCTATGCACACAACATAAAATATGATAAAATAA 118706 30 86.7 24 A...............A......C.....T TATTTTAATTATTAACTATGTATT Deletion [118760] 118760 30 86.7 36 ..........A....TA........A.... CTTATTTTATCATATCTTTTAAAGTTATTTTCTTTC 118826 30 80.0 0 ...C.....A.......A....G.C....T | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 90.7 35 GTTTTAATCGTACCAAGTTGGAATTGAAAC # Left flank : ATAGGACGCTTATCAGACTGGAACTTTATAAGCTTATAAAACATCTGACCGGGGATCAGAGTTATGAAGGATTTAAAATGTGGTGGTAAGATATGTATGCATTGATTGTCTATGATGTTAAAGAGAAAAGAGTTGCGAAAGTATTGAAATTCTTACGTTCCTACCTCAATTGGATACAGAATTCGGTATTTGAAGGGGAAGTAACAGAAGCTCAAATGCTGAAGATAAAAAACCACCTTAGGGAGATTATCGATGAAGATGAGGATTCGGTGATAATTTTCACATCTAGGGAAAAAAGGTGGCTTTCGAAAAGCATTATGGGGAGAGAAAAGAACTCGACTGACAATTTTATTTAAATACCATGAAGAATATGGTACAATTGTTATCCAAGAGGAAATAAAATCATGAGGGTACGGTGTTTTTTGCACGACTGGAAGTTCATTGCAAAAATAAGTGTTTTTGACGCCGGAACGCCTTGATATATGTGTATTCCCGTCGGT # Right flank : TATATGTTTTGAGGGAATACTATAGGAAATTTATTTTTATACCGTATTATAATTATTAACTCATAAAATAAAGAATAAAGAAGGGAAAATGAGGAAATATAGAAATAATAAACCATAATGACTTATAAAAGCGGTTGGATGAAGTTACTGCGGTTTGATGGACACAGAACATGGCTGGTATAATAAAACCAGAACATATGGAGGTGTCCATCAATGAAACGCTTTGATAAAAATTTTAAGATTGAAGCTGTGCGCCTAATTTTAGAACAGGGATGCAGTGCTTCAAGTGTAGCAAAAGAACTTGATATCCATGAGAATACAGTTCGCAGATGGGTAAGAGAATGCAAAGTGCATAGTGATGATACGTTCCATGACAGTAGTAACTTAAAACCTCAAGATGAGGAACTGAGACAACTTAAAAAGCGCATTGCTGACCTTGAGAAGGAAAATGTCATTCTAAAAAAAGCCACTGCAATCTTCGCAAGATGCCAGAAGTAGCC # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:0, 3:3, 4:0.54, 5:0, 6:0.25, 7:-0.05, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGTACCAAGTTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 2 127246-127737 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIOK01000006.1 Pseudoclostridium thermosuccinogenes strain DSM 5808 NODE_6_length_127931_cov_146.771_ID_15241, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 127246 30 100.0 37 .............................. TTTGATTTTTCTTTTCTATTATTTCTTATATCCGATA 127313 30 100.0 36 .............................. CCTAACCACCCTGAAAGTTAACACAGGGTTACTATT 127379 30 100.0 37 .............................. CAAGAAGCCACATCATCAGTAATTACCCTGCCCAACC 127446 30 100.0 35 .............................. TTGTTAATCTTATGCTTGGACTGTGTGCCGGAATC 127511 30 100.0 35 .............................. CTGTATATCAAGAAGAAAAGCAATTGTTGGATATA 127576 30 100.0 35 .............................. CTTGTCGTCGTGCGTTCCTCTCTCGTGTGTTCAAG 127641 30 100.0 37 .............................. TAACTTTTGATAACTCAATGGGTATCCTTTCTCCATC 127708 30 86.7 0 ..........................CGTT | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 98.3 36 GTTTTAATCGTACCAAGTTGGAATTGAAAG # Left flank : AACTATAAAATGGTGAAAGCTAATAAAAACTATACTTTATACGAAAGATCATGCTAAGTATGCATCCTTGGTCTGGTCCTGTTGCTGGGAGACTTTTGACTATAAAGTACTCTCAGCTATATTTTTATTATATTGTGTTGAATCATGAGCCATATAGAATTTTACTGAAAATTTCTTTATAACAAGATATATACCAATGGAAAACACATGGAAAGTACAGGTATTCATTGTATGAATTATATATAATTATCTACAACATCCTGATAAAGACTCAGTGATTATTTTCGTGTTCCGTAAAAGGAATTGCTTTGAAATGTATTAAGGGGATAGAAAAACACAACTGACATTTTATTTAAACCTCATGAAGAATATGGTACAATTACTATTATAGAGGAAATAAAATCATGAAGGTACAGTGTTTTTTACACGACTGGAGGTTCACTGCAAAAATAAGTGTTTTCGACGCCGAAATGCCTTGATATATGTGGATTCCCGCCGGT # Right flank : CGATATGGTCCAACCAGTTTATGGAGATAGGATATCCTACAGCAATGGCTGTTTTTGAAATAGATTTACTGAGAGTTCGGTAGGTCTTTATTCGCTCGTATATAGTTGCATTACTGATATGGTAGCAATGCAAAATAACTGTGTTTTGTCAACTAGAAATGCATCAAAATGACAAGAAAAATGCAGCACCCAAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGTACCAAGTTGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //