Array 1 511702-512515 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABVZU010000003.1 Phocaeicola sartorii strain CBBP-3 Bsa_CBBP_unt28_v3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 511702 47 91.5 29 .....A...............GC.......................T GATATTGCCGTACAGCATGGTCAGAAACT 511778 47 100.0 30 ............................................... AAGTATGAACTGATAGGTACCCATTGCGGT 511855 47 100.0 30 ............................................... TACCAACATCACTGTTCCCCTCCGAGGATG 511932 47 100.0 29 ............................................... TAGATGACAGTGTAGCCTCCATGATCAAG 512008 47 100.0 30 ............................................... CGGGAAGGCGCTGGGTATAATGCGGAAATA 512085 47 100.0 30 ............................................... ATTCTACGACTTCTAATACTGCTGCGCTGA 512162 47 100.0 30 ............................................... TCGACGGAGTCAACCTCATCTTCACTCCAG 512239 47 100.0 29 ............................................... CAAGCTGAATACGGCTGCATTCGGTTTGT 512315 47 100.0 30 ............................................... TAAACATTGGTATGTCTGTTGTATTTTTCT 512392 47 100.0 30 ............................................... GCATATTGTAATGTAGCTACCATGATAGTG 512469 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 11 47 99.2 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : ACGAAAATAGCCCTTTCGCCTGCAAGCGTTTCAAGTGATGTTTGCCAAATTCAAGTATTTCAGCTCTGGTAATACACTTACTGAGCCTCATCAATATGATAAGCATGAATATATCTTCAAGTTTGTGTTTGAAATTTCCCCTGCTCGTTCTGCGGTATTCAGGGATTGAGGATACAAATATTTTCAAATGAATCATGAGGCTGCCACGAAGGCACTTAAAGTGTTTCTTTTTTAGTAGTATTATGTATAAAAAGTTGTATACCAATAAAATAAATCATATTTTTACTATTACAAGAACAAAGGAAGAAGACAATGCCAACATCATATTGCTATTAAATTCCGCCTATAAAAAATTAAAAAATAAACGATAAGAAGAAACACCTAAGGCGGTGCTTCAGTATCGCTGTGCGCGAATGTAAGGCTTTTTACAACAATAACAAGCGATGAACAATATTTCTTAAATGAAGCCGTGACCAACAAAGACATAAATCACGTCCATA # Right flank : CTGAATACATATTACAACCTAATTATCAATTAGTTAAGCATGTATTCAGAAATTAAAAACGAAATTGTTTTCTAATAAGAAATCCCGTTTGAAACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCCGGAGTAGTTACACCTTGTAATTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTTGCATTCTCACTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAACCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGCACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCTGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 2 3661256-3660760 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABVZU010000003.1 Phocaeicola sartorii strain CBBP-3 Bsa_CBBP_unt28_v3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 3661255 32 100.0 34 ................................ TATTACATAATCCATTAATGCTGCAGGTGCATAT 3661189 32 100.0 34 ................................ TTCTTCCACCGAACCGGAAAATGAAGACATTAAC 3661123 32 100.0 34 ................................ ATTTGTCAATAAAGACATATTGGGACCTAAGTTT 3661057 32 100.0 35 ................................ AAAAGTTATGCGTTACGGTACCCAGGAGCAGGAGA 3660990 32 100.0 34 ................................ AGTAACAATGTACTTAAATCATACAATGATGAAG 3660924 32 100.0 35 ................................ ACCAACACGTCAGATATAACCGTAACGATGCCGGA 3660857 32 96.9 33 .............................G.. GATGAATGCAGATAAGATACAAATTAGCATGGG 3660792 32 75.0 0 ..T......T.....A.....AC..A..GG.. | C [3660766] ========== ====== ====== ====== ================================ =================================== ================== 8 32 96.5 34 GTCGCACCTCATGTAGGTGCGTGGATTGAAAC # Left flank : GATGATTATCCGGTATTTATAATAAAATGATTTACAATTATGTACATTCTTGTGGCTTATGATGTGGATACTACGAGCAAAGAAGGGGCTCGTCGTTTACGGTGTGTGGCTAAAGCTTGTGTCGATTATGGACAAAGGGTACAGAACTCTGTCTTCGAGTGCGAGGTGACAGAAGCGCAATATTGTCTCTTGATAGAACGAATCAAGGATATTATTGATATGTCTCTTGACAGTGTTAGATTTTATATCCTCAGTAAAAACGAGAATAAAAGGGTCGAAGTGATAGGTGCTGAGACTGCTTATAAAGTTAATGATGCTCTTATTATATAATGTATGCGAATGTGGAGTATTGCAAAAAAGGTAGTATTTTCGCAATACTTAATAGTCAGTAGATTAGCTCGTTTATAAAGTCAGTCACTGTTATTAAGTTGAAATAAAAATAAAGATTCGCATGCAGATAGAGTTAATTCGTTGATTTATAATATGTTATTCGGTGTGGT # Right flank : TGGATATTATTTATATTCTTATAGCTTTTCAATTTCTTCTTGAAACAATTCTGTAGCTTGTGAAATAATATCAATGGCTACTTCTGATTTTTTCAAGTTTTTTAGTCCTTTTTTCTACCTTTATTCAATCCCTTCTGCCCTTCCTTTTTCACGTTCAGTATTGATACTATCACGGAGAATAACAATGTTATCCAAGTGGCGGTAATAGCCGGCAAGCTTCTTCTTGGCCATGCTATCCAGTTTTAATCTCTCACGGGCCTCTCCAAGACCGGGGCTGTAGCAGTGGAAGGTATTTCTCGGTATTCAGGTAGTAGATCCATTCTTCCAGAGGGCTTCTGGCTACCTGATTGAAACCGTTCACTTTCAGGATATAGTATTCGGGATATAAGTCGCTGACCGTATCCGCCTTGAATGTCTGTTTCTGGAATAGGGTGAGTTCATGAAGATTATTAGTGTGGATTCCTGAATTCCGTCTTTCCATGATAAACGAAGTCCCTGCC # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCATGTAGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //