Array 1 12717-12356 **** Predicted by CRISPRDetect 2.4 *** >NZ_MEDE01000021.1 Bacillus altitudinis strain YNP4-TSU WRH421, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 12716 32 100.0 34 ................................ AAAAATAATTGGCCGTTCTCCCAAATGAGTACAA 12650 32 100.0 33 ................................ ACGGTTAGGGTTTTCGGTTAAAAATATTCGTCC 12585 32 100.0 35 ................................ CGTTCATCCCACATCGGCGACACCTCCGGTTAAAT 12518 32 100.0 33 ................................ TCTGAATAGACCTTTTTCAATTCAACGGATTTA 12453 32 96.9 34 ..........C..................... AGCGATGACAAGGCTCGCAAACACATTGTATTTT 12387 32 78.1 0 ..........C.........A.A...CAC.G. | ========== ====== ====== ====== ================================ =================================== ================== 6 32 95.8 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GAGTGCGTGGATTGAAATATTCTACGAAACGACATCCCTTTTAGTAACAACGTCGCATTCTACATGAGTGCGTGGATTGAAATCTTTTGATCTGCTTACCATCTATCCAGGTTGTGTCGCATTCTACGTGAGTGCGTGGATTGAAATAAAAAAGATGTACCACGGATGCCATGAATATCGGGTCGCACTCTACATGAGTGTGTAGATTAATAATTGTGAAAAACATAACTCTGCCTCTCAGTAGTCATGTATTTAATTAAATTCAAAGTTGTTGCTGAAATAATAAATATGATTATCAAGATTCAAATAGATTTCAGACTAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGAGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGATCATTTCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : TTCTGCGTTTTATACAAATTCAAGTACTATCCAGTTCAAAATCTACACATATGAATAATTCAAGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATCGCGACGAAAGGATAGTGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGTACCTCATAATGGTCCTTGTATTTATCCACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAGGCTGAAATGTTTTCGTCTTGCTTGGCAATTTTCATAATCTCTGTATCAGGGACCGGCACACGGTTAAAGGTGTCTAAAATGATGATCTCACCATTCATACTGCGTCCAACATGGAAAGAGGATTTACATTTCACGGCAATGCGCCATTGTCTGAACTTCATTGTAGGCGAAATAATAATGTCTTCAATTTCATC # Questionable array : NO Score: 9.05 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 13298-13003 **** Predicted by CRISPRDetect 2.4 *** >NZ_MEDE01000021.1 Bacillus altitudinis strain YNP4-TSU WRH421, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 13297 32 100.0 35 ................................ TCTGCTTTATTGGAAAGATCGGTCAGTACAAAGGA 13230 32 100.0 33 ................................ ATTCTACGAAACGACATCCCTTTTAGTAACAAC 13165 32 100.0 32 ................................ CTTTTGATCTGCTTACCATCTATCCAGGTTGT 13101 32 96.9 34 ............G................... AAAAAAGATGTACCACGGATGCCATGAATATCGG 13035 32 87.5 0 ......C............T..A....A.... | T [13006] ========== ====== ====== ====== ================================ =================================== ================== 5 32 96.9 34 GTCGCATTCTACATGAGTGCGTGGATTGAAAT # Left flank : CCAGAGACGGTAGGAGAAGCATTCAAAGTGGATGTGATGACACCTCATCATTCAGACTACAACAGCGTCAAGCTAGATAAGATGAACAAAGGGGGAAGTGTTCCAGCCCCTCGAGACGATGACTCACCAACACCGATTTATTTCTTAACGGTGGTCAACGGCCGTTTTCAACTTCTATTGAAAACAAAAAAGAATCTATCAGAAGAATCGGAATGGCTCGAACTCGCCAAAACCATCTTACTAGGCGCTTTAGAACACGAAGGAATCGGTGCTAAAACAAATGCGGGTTATGGAAGACTTAAAATGGACGACGTCATTTCGTAAGCCATGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTCAGGGGTGAAAACTTAATTCCTATATAGAAACTTAAGGGTTTTGACGAGCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : TGTGAAAAACATAACTCTGCCTCTCAGTAGTCATGTATTTAATTAAATTCAAAGTTGTTGCTGAAATAATAAATATGATTATCAAGATTCAAATAGATTTCAGACTAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGAGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGATCATTTCCTAAAAAATGTTATAATTAGGGCGAAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATAAAAATAATTGGCCGTTCTCCCAAATGAGTACAAGTCGCACTCTACATGAGTGCGTGGATTGAAATACGGTTAGGGTTTTCGGTTAAAAATATTCGTCCGTCGCACTCTACATGAGTGCGTGGATTGAAATCGTTCATCCCACATCGGCGACACCTCCGGTTAAATGTCGCACTCTACATGA # Questionable array : NO Score: 8.91 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 21765-21469 **** Predicted by CRISPRDetect 2.4 *** >NZ_MEDE01000021.1 Bacillus altitudinis strain YNP4-TSU WRH421, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 21764 32 100.0 33 ................................ CTATCTATACCAGTCTTAAACTCATGATAAAGG 21699 32 100.0 34 ................................ TTTTCGTAAAAACATAGATACGCATCTGATTTTT 21633 32 100.0 34 ................................ CTTTCTTCACCAACTGTCATGAACCGGTTTGAAG 21567 32 96.9 35 .............A.................. ATTGACGCTTTACTTTCATATAGGCTGTCATAGTC 21500 32 87.5 0 .............A.....GA..........A | ========== ====== ====== ====== ================================ =================================== ================== 5 32 96.9 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGACCGGCTAGGCGAAACGAGACAAAACATCTCAAACATCCACAAAAAAGCACTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGCAAGAAGACAAAATGACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTACATCAAACTCATCGAAAAAATAGACCGGCTGATTTACCAAGAAGGACCTGGCTTTTGGGAGTTTATTGTGGAATATATGACGAAGATGTAAGAGGAACTGATGGTGCGAATGTCAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTCATTCGACAAAATTGAGAAAAAATGTATATTTTATAAAGGAGAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTACCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : TTTGAATTGGCAGCGTCATAGACCAAGCACCCCCGGACTGGCCCAGTAGTCCATGTTTTTAAATGAATTCAAAGCTGTTGATGAAACAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTAATTAAATAGGATTAAGAGAGATTCGGTGCGAATGTGAGGTGAACATAAAATTCCTGAGGCATTTGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAATTGAGGGTTTTGGCTATCATTCCCTAAAAATGTTATAATTAGGGCGGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATCGTTTACTTTCCATCTTAAATTGAAAGGAGGATTGGTCGCACTCTACATGAGTGCGTGGATTGAAATGATTTCTTCGTCTGTTAAATCTTCATAGTATTTGTCGCACCCATATATGAGGTGCGCATGGTTTTCAATGATTGTGTCTTAAAC # Questionable array : NO Score: 8.91 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //