Array 1 90642-89614 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCMP010000003.1 Anaerostipes hadrus strain DFI.4.26 OIFANKDA_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 90641 32 100.0 33 ................................ ATCTAACAGATATTTGCTTTCTCCTCCAGCAAG 90576 32 100.0 36 ................................ AGAAGATGTCAGAAAGTCCATGGAAGATGAAACAAC 90508 32 100.0 33 ................................ TCAATCAACGGAAGTGATGCACCACCAGGATTT 90443 32 100.0 33 ................................ AACATCTCGTAGCTTTCCGTACTGACCTCTTAC 90378 32 100.0 34 ................................ TGCCATTGTTTCCTCCTAACTTATCGTAATTGTT 90312 32 100.0 34 ................................ CTATCCTCCTATCATTTTTAACAGTGTTTTATAA 90246 32 100.0 35 ................................ TTCTTAATTGGATCAATAAATGGTCGTTTTGCCAT 90179 32 100.0 33 ................................ ACTTTTCCTCCGGATTTCATAATTTTGAATGCA 90114 32 100.0 34 ................................ AAGTGAGGTTGTAAGATTAAGGTTCCCCAAATTT 90048 32 100.0 35 ................................ AATGTGTGGACTTACAATAGATTCAAGGCTGAAAG 89981 32 100.0 35 ................................ CTGTCACAAGTTTTGCAAAATCTTCTACAGATTCC 89914 32 100.0 35 ................................ TATACAACGCATCGGTTGTACCTTGCTAAATACCC 89847 32 100.0 37 ................................ AATGTAATGAGCAGGAATCCATGTTGCACCAAGTTGT 89778 32 96.9 35 ........T....................... AAATCATACAAAGTAAAAGTAACTGCTTCTGCTCT 89711 32 100.0 34 ................................ AATTTTAAGACATAATCCGACCAATTCCCCACTT 89645 32 75.0 0 .............CAA..A..CA....C..T. | ========== ====== ====== ====== ================================ ===================================== ================== 16 32 98.2 34 GTCGCTCCCTTCGTGGGAGTGTGGATTGAAAT # Left flank : ATCCAGCATTTTTGTGGAAATGAGGTGATAAAATCAAATGTTAGTATTAATTACTTATGATGTAAATACAGAAACAGCAGCAGGGAAAAAGAGACTGAGAAAAGTGGCAAAGCAATGTGAAAATTATGGAAGGCGAGTACAAAATTCTGTATTTGAATGCATTGTTGATAATGCACAGTGTGTGATGCTAAAAGCACTCTTAAATGATATCATAGATGAAAATGTGGATAGCTTGCGTTTATATTATTTAGGGAATAAATATCAGACTAAAGTAGAACATTTTGGTGTAGACAGAGGAATACAAGTTGATCAACCATTGATTTTATAGTGATGCGAGGATATAGCAAACATAAAAAGAGTGGGAGATTCGCACTTAAAATATGAAGTAAAAAATAAATTTGTATCTAAAAATAAATAGTATTTGAATGATTTGTAGATATAAGATAAAATTTATTAGTGATATTGAACAAAAAATTAGAAAATTATTGGTTAATATTGCT # Right flank : ATATTTTACTTGGTGTGGGTTATATTAATATTTATAAATTGTCATCAATATTGTAGTAACGATAAGCGGATATACATACAATGGAAGCACAAGAAAGGAAGAAATCAATGAAACGATGTAAAATTACCGCAGTACGGAAAACAGAATATAAAGATCTAATGGAAAAGTATGAAAATCCAATCCAGCATGCCTGCGATATAGAAGAAGGACAAGTATTTATCACAGAAGGATGGAAACGACCAGAAGGATTTTGTGAAAGCGCATGGGAGAGTATTTCACCATTTGTTATGACATTAGCATATGGAGGCAGTGATATTTATGAAGGCTGGATGAAAAACAAAAACTCAGCGATGATCAGTTGCAATGACGGGTTTAGACCGGTAAGTTTTTACATTGAAGTGTTAGATGAGAAAATATATTAACGAGGAGATAAGAAATTTAATATCAACTCATAAATTTCCTAATATCTTCCAAAATAAAAGTAAATTCGATAACATGAG # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCGTGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8562-9190 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCMP010000053.1 Anaerostipes hadrus strain DFI.4.26 OIFANKDA_53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 8562 30 93.3 36 C.....G....................... CAAGCTTTCAAGAACTAAATCTAATAAACTTAACTG ATA [8575] 8631 30 100.0 36 .............................. ATTAGTTCGCATCGTTTTGACTGCTCCCGTTGCAAG 8697 30 100.0 34 .............................. CACTTAGGAAACTACAGGACAGCCTGATTCCAAT 8761 30 100.0 35 .............................. AAATAAGAATTTATCGAACAGATCTGTTTTGACAG 8826 30 100.0 38 .............................. TGGCGGAACTGTATAATGTTTAGAAAGGGGTGTAGATA 8894 30 100.0 37 .............................. ATGCACCCAGTTTTGTATCATGAATTTCTAAACCATC 8961 30 100.0 38 .............................. TGCTTTGAAAAGCTCTGGAAACAGTACCCGAATAAACG 9029 30 100.0 36 .............................. CCGATGGCTCTTTCCTTCCATGCGGATCACATTCAC 9095 30 100.0 36 .............................. GTAAATGCAAAACATTGCACTGACACTTTTGAAGTT 9161 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 99.3 36 ATTTAAATTCCATTATGATTCTATTAATTC # Left flank : CTGATGCGAAATTGCAGATTTTGTTACCCCAAGTAGCACTGCAAGATCACATACACACATCTCACTCTGTTCTAGAGCGTGTAAGATTTGTACTCTAGTTCCATCTCCAAATAGCTTAAACAAAGAAGCCAACTGGATATAATCATCTTTTGGCTGCATCTTGGATTTCACATCATTCACAATATCCTCATGAATTACATTGCAATTACAAATATAAGACGTTTTTGGCATATATTCACCTCCAAATAATAATAGTTGAACAACTACTCAACTATTATTATACTTATTTTTAAATTTATGTCAATAAGCTGATGTTAGTTCCCCATAAATTTTACAATTAAAACCAGCTCTTTATTCTTTTCTTTATCACATCTCATTTCTGGATTAAACGCTTATTTTAATTATCAGATTTTTCCTTCTAATCTATATTCTTAAGGTTCCAGTTGACTCATTTGGTCCCAAGTGCCTTAAGATTTCCAACCTGTTACATTGAAATCCAT # Right flank : CCGTCCCAAAATCATCCCCTTATTTAAGCCAAAAAACGTCTCTATTTTGTCGACCTCTTCAAAATTCAACATTTCTTTCTTGTCCCTAATCATATATTTCTGCAACACCTCCTATTTTAGGCGTTTCCGCCTTCTGTCGATCCCCTATATTTTTTGCACTATCAGGGGTCGACAGAAACCCCTAATTTTTCAAGTTGATTTTGTTCGACACATTCTATTATGAAACTTATTTGCTAAATATGCAAGTTAAATACACGCATTCATTATATATACTTTTCGAGCAAACACTATACAGTCATATATGCATCAAATATCACCGTCTGAATAATCCAATTTATCGTCATTTTTATAAAAGTCATGCCCACGCGAGAAAATTTCCGTGGGCATGACGTGGGCACAGCTATTTTTAGGCTTATTTTCAATCAAAACCACCGGCTTAGCCGGTGGTTTGTACTAGCCCTATAAGGGCTTATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATTCCATTATGATTCTATTAATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //