Array 1 2225916-2226206 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072044.1 Akkermansia muciniphila strain Akk0580 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 2225916 31 100.0 34 ............................... TAACTTTATGTAAGGCAAAGAATATGGAAGTTTG 2225981 31 100.0 33 ............................... GGGAACAAGGCCAATTTAGCATAGGAGCGGATT 2226045 31 100.0 34 ............................... CGAGCTTGGTTTCCGGCCTCCCTTCCGTCCGTTG 2226110 31 100.0 34 ............................... CCGGGAGCCAAGACAAAGCGGCTTGTCCATGTCA 2226175 31 87.1 0 .....................A..A....TA | G [2226188] ========== ====== ====== ====== =============================== ================================== ================== 5 31 97.4 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GCCCTGTAAGGGATATTCCGTCATTCATTCGTTAACGGGAGCCGTCCGCAAGGGCGGCTCCTTTTTAATGGCAGCGGAAACCGGAGGGGAATTCGGCTTCCGGCAATGGGGAAAACGGCGCGCCGCCCGGGAGGCCTGTTGTGTATGTGTCTCCATGTTGGCGGCTCCGGGGATGCACGGTTCTGTTTGAAGGAACGTGGAAGATGTTGCTGGACGCGGCAGAGGGGAACGGCTAGCATCAATGAACCAAGTTGAATGCAAGCCGGACCGGACGCGGCGAAGATGGAATATTACGGAATAACGCCGCGTCTGATGCCGCCTTGCGCCAACCCCAAGCTCACAGAAAATTCCCGGGAGACCGGCGCTTGCTGCAAGTGATTGGGAAATGGATATTGACAAAAGAATCACCTCTTATCGGGCCTGACCGTATCCGGCTTCCGCATCAGGTTGGCGCAAACCCCTTGCTGCGCCCTTGATGCTCAACCCGTATCCTCCAGGCC # Right flank : AGTGCAGTTGTTTTTAATGATGTCTGCATGGTAAGGGAGGTGATTATTTTGATAAATGGTTTTAAATGGTTATTTATTGAATATTCTTTTGAGGAGGGTTTTTATGTTGGGGAGGACGCCGGATGAACAACTTTCCGGATGGTTTATTATGGTTTCCGGACAGCCTGTCCGGAAAAGGGAAGCAGGCAAGCGGTGTATTTCCTGCGGCATGGGATTTTTTTCCGCGTTCACAGTTTGTGATGGATGAAGCCGGAGCAATCCAATATAAAGATAAGATGCATATAGACTGGTTGAATGATTTTTTGGAATGGACGCCTATTTTGCTGATGGTGCTGGTAGCGGTCGTTTTTCTGGTGGCGCTGAAATGGAGAAGCGGCAGGATGAAGAAGTTTCTGGAGGAGTGGAAACGTAAGATCGTCCGGCAGGCGGAAGCCGGGAATCCCTCCGCCCAGTTCCGTCTGGGGCGCATTTACCAGGAGGGGGACGGCGTGGAGAAGGAC # Questionable array : NO Score: 8.93 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2432575-2433385 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072044.1 Akkermansia muciniphila strain Akk0580 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2432575 31 100.0 35 ............................... GTTAGTTTTCCTCTGCTCTGAAAGTTGCTTGGCCG 2432641 31 100.0 34 ............................... CTCCAACGGCGTCCAACTGGTGCATGTCATCCAG 2432706 31 100.0 34 ............................... TTTCAGTGCCATATTTTTAGTTTAGTTTAGTTTG 2432771 31 100.0 34 ............................... TCGCAGTACATTAACAATATGTCCCGCTCCGCAG 2432836 31 100.0 34 ............................... TACGCTTTCCCCGGTATCGACGCCGATATAACAG 2432901 31 100.0 34 ............................... TGGAAGCCGGAGCGCGGTATCGTCAAACCAGCTT 2432966 31 100.0 33 ............................... GCCAGGTCCTCCTTACTCTCGATTTTGACGCGG 2433030 31 100.0 34 ............................... GATGTGCGGACAGTCCTCGTATTTGACCCGGATT 2433095 31 100.0 34 ............................... GGCAATAATGTGCCTGCTTGTTTGTGTGCTCTAA 2433160 31 100.0 34 ............................... CAGAAGAGCAGCAGGCCTTTGCCGCAGCCGAAAG 2433225 31 100.0 34 ............................... CAGTTTTTGGCCTGCTCCCTGGCGACAGTCCGCA 2433290 31 100.0 34 ............................... GATGGTGTTGCCCGTCACCTTGGTGTTCTTCCGC 2433355 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 13 31 100.0 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : CTTGGGGAAAACGATGCCTCCCTCAAGGACACGGTAACTATTCGCCACCGCGACTCCATGGAACAGGAACGCGTCGCCATCAAGGACCTGTTGCACTGGCTCATTGCCCGTGTGCGTTAACGGCGCCTTTGACAGCCGCCGATGCCGGAAAACACTTCAAGGCCACTCCATTAATATGGAGCGGCCTTTTGATTTCAAAATGGCTGTGGAGAAAAAGTTGCTGGACGATGGACCCTTGACCATCTAGCATCAAAAACAGGTTGGTGAACCAGATGGGAATCAGCAATTCCAAAATGAATTGCTGAACCGATAAACTGTTTGCGCCAACCTCAAGCTCACAGAAATTCCCCGGGAGATCGGCGATTTCTGTAAGTCCTTGAAATCAGTAGATTGACATTCTTTCCAATAAAATATAAGGGGGTAAGGAATATGCATCTTGAAAGAGGTTGGCGCAAAGGGCTGTTTGTACCACTAACTTTCAATGCATATTCCCTTCCGCC # Right flank : CTTTGTTGAGCGGGTTTCACGATCCTGTGTTGGCCGTCGCACCTGTAACGTCGCAGCGCATCGTAGAAAAATTATCAAGCATCGTGGAAAAACGCCCTTGAACGTCTGCCCGCTGCATCCCCATTGCAACCTGGTTGCACCTCCCTTGAAAACGGCTTGAACTGGCCTCCCTACTCCCCGATCACGTCCCTGGCGGCCAACTCGTCAAATACGCGAATGAATTCTGCTGCGTCCATCTGCTGCCGGGGCATGTGAAGAGTGCCCAGCGTCACCACGTCCAGCCGGTCATATTTGGCTACTGCCGGCATCGTTGGCCAGCGGTAGGCCGCCCAGCGCCCCTCCGGCCGTGATGCCGCCCAGGGCCGCTCTATATGAAGCGGAACCCCTGCGGCCATGGCCAGGCGTCCCGTTGCTATATCCTCCGGATCGTCACCCCCAATGGGCAGCCGGTCCAGAACTGCAAGCATCCGGCGCAACGCGGACCCCGTGAACCCATAGCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2889120-2887340 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072044.1 Akkermansia muciniphila strain Akk0580 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2889119 31 100.0 34 ............................... CTCCAACGGCGTCCAACTGGTGCATGTCATCCAG 2889054 31 100.0 34 ............................... CTCCAACGGCGTCCAACTGGTGCATGTCATCCAG 2888989 31 100.0 33 ............................... TCCTAACACGCTAGCATTTAAAGCGTTATAATG 2888925 31 100.0 34 ............................... AGCGATTTCAATGCACGTCTGTTCCCGGTTTGCC 2888860 31 100.0 33 ............................... CTTGTTTTTCCGCTTGGCAAGCTTTTTCAAGGT 2888796 31 100.0 34 ............................... TTCGTAAAAATCCCCGCGCCGTACCCACCAGGAC 2888731 31 100.0 34 ............................... CGCCGTGGCATTTTTTAAACACTTCACAGAACAA 2888666 31 100.0 34 ............................... TGTTTGGCATGGGGCGTTTTTGCTCTATCCAGTT 2888601 31 100.0 34 ............................... AGGTGCTGACGTGGCATTCTTTCGGCCAGGACGG 2888536 31 100.0 34 ............................... CGTTTTTGGGGCGTCATGGTCAACTTCGTTCCCG 2888471 31 100.0 34 ............................... CCTTCGGAGGCTTTCTATCACCTCGGCCAGGGAT 2888406 31 100.0 33 ............................... AACTTTATCTCCTACCTTCACCCGCATGATGGG 2888342 31 100.0 34 ............................... AGGAAATACCTTGAAAAATATCTCACCGGAGAAA 2888277 31 100.0 33 ............................... CCTGGATTTTGCCAAGGCATCCCCTGTTTCCGC 2888213 31 100.0 34 ............................... CTGGTCTGGTAGCAAGGCAGGTTGGTTTGGAATT 2888148 31 100.0 34 ............................... TCTGCGGAGAGCATCATGCGGCCATATCCGCCGC 2888083 31 100.0 34 ............................... AATAACCCATACCCACTGATTCAGATTAATGGAG 2888018 31 100.0 33 ............................... ATCTACCTGGATTTCCGCGAGGTGGTGAAGGAA 2887954 31 100.0 34 ............................... TTCCACGTCCACTTTTTGCGGCTTGCCGTGTCCC 2887889 31 100.0 34 ............................... TGTTATCGGATAATCTGTTTTTAGATATTGGCGC 2887824 31 100.0 34 ............................... ACGCACCCGCGCCTTGTACACCCCATCATAATAG 2887759 31 100.0 34 ............................... AGCAGTATTCAGCCATCCGGCTTTATCATCATCC 2887694 31 100.0 35 ............................... CAAAAACGCGTGGACGACGCCCGCGCCAGCCTCGC 2887628 31 100.0 33 ............................... GATAAGCTTGTATTCCGCCAGGGTGATAGCCTG 2887564 31 100.0 33 ............................... CGAAAATGAAAGTCCCCTGGCTTATATGGCCTG 2887500 31 100.0 34 ............................... TTTTCATCACTTCCGCGTCGCCGGAATTGGTGAT 2887435 31 100.0 34 ............................... GGTTCCGGCGGCCCTATCCGTGAAAGCATCTTTA 2887370 31 90.3 0 .....................TA.......G | ========== ====== ====== ====== =============================== =================================== ================== 28 31 99.7 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCGTGAAAATACCGTTGCTGGCCTGCCTGGCCTCCGCCGTCTCCCTGGCGCTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATTATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCAGTCCCGGGGCGCCTTTTCTTTTGTGGAAAAGAGAATAAGGCGGTTTCCGGGGAGGGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATATTCCTGCATCGTGCACAGGCCCTGGTTGCCGGAGATGTGGGCTTTTTAACGCATGAAAAGCGCGTCTCCCGGTCTCCCTTCCGCCAACCCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTACGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTTACGGCCTGGAATATGTGTGCCTCCATGGGAGGTTGGCGCAAAACACCCGTTGCGCTGTTGATACTCAAGCCATAGGCGTCCAGGCC # Right flank : TCCACATGTCTGCGCGGGGCGCAAGCCGCTCATGCACTGCTTCTTGAAAGAGGAGCAGATCAAAGCTTTATTTTCCGCAACCGTATCGTTTGGTGTTTGGTCTGTTCCCCTGTTATTTTAAGAAAGGACGGTAAGAATCCGTAGTGGAACGGGATGACGGCTCTCTTCCGTTTACCTCTCAGATTGGCATGGTTTGCAGCCTTTTAATGTCCGTCCGCGGCGGGTTGCCGAACATGCGCTTGTATTCCCGGTTGAATTGGGTAGGGCTTTCGTACCCAACGCGGAAGGAGGCGTTTCCTGCGTCCATGTTTTCCACAAGCATCAGGCGGCGGGCCTCATTGAGGCGGATGCGTTTCTGGAATTGAAGCGGGCTGATGGCCGTGAGGGTACGGAAGTGCTGGTGGAAGCTGGACGGGCTCATGCCGGCGCGGCTTGCCAGTTCCCCGATGCTCAACGGCTGGTCGAAGTGCTTTTTTATCCAGTCAATGGCTTTTGCTATC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //