Array 1 65389-63424 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBHH01000004.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain F70H2 NODE_4_length_178824_cov_13.3848, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 65388 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 65327 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 65266 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 65205 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 65144 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 65083 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 65022 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 64960 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 64899 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 64838 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 64777 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 64716 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 64655 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 64594 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 64533 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 64472 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 64411 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 64350 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 64289 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 64228 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 64167 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 64105 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 64002 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 63941 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 63880 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 63819 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 63758 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 63697 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 63636 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 63575 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 63514 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 63453 29 96.6 0 A............................ | A [63426] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 83013-81520 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBHH01000004.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain F70H2 NODE_4_length_178824_cov_13.3848, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 83012 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 82951 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 82890 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 82829 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 82768 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 82707 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 82646 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 82585 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 82524 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 82463 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 82402 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 82341 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 82280 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 82219 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 82158 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 82097 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 82035 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 81974 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 81913 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 81852 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 81791 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 81730 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 81669 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 81608 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 81547 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //