Array 1 1201-873 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIWH010000091.1 Escherichia coli strain EC23 STEC3_S3_trimmed_contig_91, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1200 28 100.0 32 ............................ TGCGAATTGTATCTTTGTCCTCCTGATGTGGT 1140 28 100.0 32 ............................ AGCCTGACTCATCGACTAACTTCATTGACGAC 1080 28 100.0 32 ............................ CAGAAATTAATACACGTAACAAACAGCGCATC 1020 28 100.0 32 ............................ ACCAATATATACAGCACACTGACAAGTCATGA 960 28 100.0 32 ............................ ATTGAAGCCCAATCGGTATAACCCATATTATT 900 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TACAGGCAGCTTAGAAAAATTAATATTGATAATGAATCAGGTAAAAGT # Right flank : GTCTGCGTGGGTTTCTGCCCGAGGGACAAAACACTGGAATATAAAATCGGAATTTAAAACTCACAGGGATGGATAAGATGATTAGGTTATTGATATTACTATTTTTTATTTCTTCACCTGCCTTTGCTGTCAGCGATATTAACAACGCCGCCAAGGTGGCTCTAGAATTCAACAAATGGTATTTGCAACAGATTGAAAAAGATATCTATCCGTTGCTGGGAAGTGGTAGTCCAGAAATGGATGAATATGTGACCGCTGAAACGTTAAAAAAACTGCATAGGGCAGTGAATAGCGATGATGAATTCTATGACGCCGATTTTTTTACGCGTTCACAGGACATTGGGGCTGACTGGCCGAAAAATGTCACTGTGGTTTTTTCCGATCTCGATCCGGTTTGCCTGAATGTTTATGTTTCTTATGGGAAAGATATCTCCCACACCGTCATTGACTGCATGGTTAAGGAGAAAGGGAAGTGGAAAATCCAGTCGGTAGCACTGCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1568-520 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIWH010000040.1 Escherichia coli strain EC23 STEC3_S3_trimmed_contig_40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1567 28 100.0 32 ............................ CATCAGGCCAGCGCCTTTAGCGAAAGCGTGAC 1507 28 100.0 32 ............................ AGTTGCCACGACGCCTAGGGAACCATTAGCGC 1447 28 100.0 32 ............................ AGTGGGGCCTTTTAGTGTTAACCCGTAGAGTG 1387 28 100.0 32 ............................ CAGCACCACACACCGCGTTTTTATCTAATGCC 1327 28 100.0 32 ............................ CGTCATCATTGCGCCGCTCGGCACTTTTACTG 1267 28 100.0 32 ............................ TCACAAAGCCTCACCAGCCGTTCTATTGATTC 1207 28 100.0 32 ............................ GAAAATCTCTGGTGATTGACCAGTACAGACCT 1147 28 100.0 32 ............................ GCAATCTTTGCGCAGTTCTCAGCATTGTTTGC 1087 28 100.0 32 ............................ CACCGGCGGAGTTTGCCCAGTCCATGTATTTG 1027 28 100.0 32 ............................ TATATGTGCCACTTAATAATGGCACTGTTGCA 967 28 100.0 32 ............................ TTTTTCTTTTAATGCTGCATTAATTGCATCAC 907 28 100.0 32 ............................ ACACGCACTGCGTAACATCAAATCAGACAATC 847 28 100.0 32 ............................ ATCTGGCGTTTCAGTAAAGACCTGCTCACCTT 787 28 100.0 32 ............................ TAGGGCGCTGCTAGCAAGTGATGACAATCCTG 727 28 100.0 32 ............................ AGTGTTCCGGTCACAGGCCATGCATCAAGGAA 667 28 100.0 32 ............................ TCCACACCGGTCGGATACTTAATTTTAGTGGA 607 28 96.4 32 ............G............... ATGAGAGAGAGCCGTTGTGACAGGCAATGTAA 547 28 96.4 0 ............G............... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTAACTTTCACCGGCAAAGTGCGCAACCACAATCTTGGTGATAACGTTAGCGCGTTAACCTTAGAGCACTATCCTGGGATGACGGAAAAAGCGTTAAATGAAATTGTGGCAGAAGCCCGCTCGCGCTGGCCTCTACAGCGTATTTCGCTGATCCACCGCATTGGCGCAATGTATCCCGGAGATGAAATTGTATTCGTTGGAGTGACCAGCGCACATCGCAGCATGGCCTTTGATGCCGCTGAGTTCATTATGGACTACCTCAAAACCCGCGCGCCGTTTTGGAAGCGAGAAGCCACAGAGCAGGGCGACCGCTGGGTCGATGCCCGCGACAGCGACCAACAAGCGGCAAAACGCTGGTAAATCCTTTCAACCCTTTTTTCTGCCCTCACGCTAACTCATTGATTTTTCATTCCTCCAATGAACCGTAAGAAAAAAGGGTTAAATTCCCAAAAATGAGCTACCGATCTGATTAATCGACGCTTTCTGCGAATATCCTACA # Right flank : AATTCAAAGTGTTTGCGTTTGGTATTATTAAAACCGCATAAAATTTAAGCTTTTAAACATGTTATATTCCAAAATTCAGAATTACTGCATCGTTAAGTGTGATTTAAGTTAAATTTCTCTTATGTATTGAGTGATATTTTGACAGCGTCGCCAAAACGGAAATAACGATGTGAACAACAATGATTTCTCTCCATCCGACCTCAAAACCATTCTGCATTCCAAACGCTCAAATATTTATTATCTCCAATACTGTCGTGTATTAGTTAACGGTGGTCGGGTTGAATATGTGACGGATGAAGGGCGCGAATCTCTGTATTGGAATATTCCCATCGCGAATACCACCGTGGTTATGTTGGGCACCGGTACCTCGGTGACGCAGGCCGCAATGCGAGAATTTGCCCGTGCGGGCGTATTGGTCGGTTTTTGTGGCGGAGGCGGAACGCCGTTGTTTGCGGCGAATGAGGTAGAGGTGGATGTCTCGTGGTTAGCCCCGCAAAGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //