Array 1 1652-1220 **** Predicted by CRISPRDetect 2.4 *** >NZ_UAWT01000024.1 Listeria fleischmannii subsp. fleischmannii strain NCTC13940, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 1651 37 100.0 29 ..................................... ACTTTAGCCAAAGCAGATGGTGCGTTTAT 1585 37 100.0 29 ..................................... AGGGGATACAGGCGCTTTATTCGCTGTTA 1519 37 100.0 29 ..................................... TACTACAGGTGAATTTGAGTCGCTCAGCT 1453 37 100.0 29 ..................................... GTAGTTCTCGTCTTTATCATACAGTTGTA 1387 37 97.3 29 ....................................A GCACAAAAGAAGTGTTAAAGAGCAAGTGC 1321 37 100.0 28 ..................................... AGCATTGGCGAGCGTTCTCTACATTAGT 1256 37 86.5 0 ...........................T..C...TTA | ========== ====== ====== ====== ===================================== ============================= ================== 7 37 97.7 29 GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAACT # Left flank : AAATATTGATGATACACTAAGTTATCAGGAATATGAGGAAGTTATGAATTCCATGAAGCGACTTACCACTAAGCATCCTAACTTCTATTGTATGGTTTTCCCAAGCCAAATCGGATATGTTTATATTAGCGAGGAACATATTGAAAGTATATTAGTTGTAGGAGAAGAGGCTCATTCACTCGCGGATGGTCGTAATTTATATACACGTGTTTGTGCCTATTACCCAGATCAAACTATCCCTAGCTACAACGAATTTTTAGAGGCACTAAAAATTATTGCCCCTTATTTATTTACAAGCAAAAAACAAAGCATCCAAATGAATGTAAAAGAACTGGTTTTAATCAAAATAATTAATGAGCTATTCCAGTACTTTGACTTTATTCCAGTAGCAGTATTACAACATAGCCAACTAGAGTATGATTTTTTATATGAAAGCTGATAGATTTTATGATAAACTAAAATAACAGTAGTTTTTTTTAAAAATCTAAAACCAATTTGAG # Right flank : TTAGATGTGATTGATCCTAATTTGAATAGTTTCATTATTCTCAGATATTCTTATGATTTCATGTAAATAAAAATGCTAGAAGCAGATTATTGCTGCTTCTTTATTGTATCCAAATAACTATTCCTAAATAGAACTAAAGTCTATCTACTATGTTCAAAAGCCTGATTTTATACAACTTTTTCTCTAATTAACCCCAAAAGTACTATTTTTGTCAGAAAGCTACTTTTTACTTTCTTTTTTTAGATTTACTCATTATATTTAAGTTAATCATCAAGAGCTTCTCTAATTAAAATAAAGGAGGGATGTAGAATTCTGAAAAATTAATATCGTGTTTTACAAAGGGAAGATGGTCGGTTTTTTGTAAATGTTGGGGGGACATAAACAAATCGCAAAGACAGGAAAGAAAAACATGAGAAACGCCCTTTCATTGATTTTCATTATTTCGCTTAAGGGATAGGCGATAGGGGGAAAAATGATGGGAAGAAAAAGTAAGGTGAATT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 7583-8474 **** Predicted by CRISPRDetect 2.4 *** >NZ_UAWT01000024.1 Listeria fleischmannii subsp. fleischmannii strain NCTC13940, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 7583 36 100.0 30 .................................... TTTCCCCCGTTCGGAATTCTAAGTAGCTAT 7649 36 100.0 30 .................................... TAAAGATACTACTTTAGGATTCACGCCTGT 7715 36 100.0 30 .................................... GAGAACAGTAAAGAAGGGGTATGTTTTGAA 7781 36 100.0 30 .................................... AATTTCCAGATATTTACAAGCAAGTGTTAA 7847 36 100.0 30 .................................... AAAGATGTGGTTATACCATTATCGTTGTCA 7913 36 100.0 30 .................................... TCCTCTGTTGTAGATGCCGCGCCTCGTTGT 7979 36 100.0 29 .................................... TCGTAAAAAAGGGATTGACTACATAGCAC 8044 36 100.0 30 .................................... TCTGGAGTTAAAGATTTACTCGACTATGGT 8110 36 100.0 30 .................................... AGGAAAGAGCAACTTTTAGAAGGCTGGACG 8176 36 100.0 30 .................................... AGACAACATTCACGATACATCAAGCAATAG 8242 36 100.0 30 .................................... TTGTTCGCCCTTATTACGACTCGAATACTC 8308 36 100.0 30 .................................... TGTTCAAGATGAAATTGTATACATGATGAT 8374 36 94.4 29 ..................................CA AACTTGATCAAAAAAATCAAGCTCGGAAG 8439 36 75.0 0 ...............A.......TT.C.CA..C.TT | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 97.8 30 GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAAC # Left flank : TCCACGACATCATCCAGATAAGATACACCCCGACGCTTAGCCAAATGTGTCAGAGCCACATAAATCTCTGATATTTCAAGCTTTTCATTTAGCCCTTTTACTCTCAACTGATAAGGATTTTCGTTCACAATATCACAAACATCCATATCATGCGCCAGAAGTAATTGTTTAATTCTTTCTCTACGATGCTTTTTGCGTCGGCTTAGACGTCTAGATTGGCGACGACTTGTTCTCCTGCTTTCATTTTCTGAAGCATCTCGACTACTGAATAACCTTACCCCAGCATCTAGGACATCACCGTTTTCAGCGTCTATAATCCCCCATCCTACAGAAGCAACCCCAATATCCAAACCTAAAACCAATTTTTTCATATGATGTTCCCCTTCCTTTTGTGTACTAATTAAATTATACAGTTTAAAGAGCGATAAAGCTACTATAAAATAGTTTTATGTTATAATAAAACTAAGTAGTTTCTAAAAACTCATTTTGACGAATTTGAG # Right flank : TTCCTAGAAAATCATAAAACCATTTGCGTCTCCAAAATCTAATTTTGAAGACGCAAATGGTTTTTAGTTTGGCTTGGGTAGCCACTTTATTAAAATGGCATTTTGAAATTGCCGAAAGGGTTTTTGCCTTTTTTGCCTTTTCCGCCCATGCCGCCGGACATTTGTTTCATCATTTTTTTCATTTCATTAAATTGTTTGAGGAGGCGGTTTACCTCTTGGATTGGGCGTCCGCTGCCTCTTGCAATTCGTTTTCTGCGGCTGGCGTTGATGATATCAGGATTGTCTTTTTCATTTTTAGTCATGGATTTAATGATGGCTTCGATATGCCCAAGTTGTTTATCATCGACTTGCATATTATCAAGGCCCTTCATTTTGCCGGCGCCAGGTAGCATCTTCAGTAGCTCATCAAGCGGGCCCATTTGCTTCACTTGACCAAGTTGTTCTAGGAAGTCATCGAGTGTCATGGAGTTTTCTTTCATTTTGCGCTCCATTTCACGCAT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //