Array 1 98037-100017 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFYG01000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain C66CEB11 NODE_3_length_358602_cov_21.985343, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 98037 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 98098 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 98159 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 98220 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 98281 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 98342 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 98403 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 98464 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 98525 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 98586 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 98647 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 98708 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 98769 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 98830 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 98891 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 98952 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 99013 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 99074 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 99135 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 99196 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 99257 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 99318 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 99379 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 99440 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 99502 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 99563 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 99624 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 99685 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 99746 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 99807 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 99868 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 99929 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 99990 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116150-116954 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFYG01000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain C66CEB11 NODE_3_length_358602_cov_21.985343, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 116150 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 116211 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 116272 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 116333 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 116394 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 116456 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 116517 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [116559] 116559 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 116620 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 116681 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 116742 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 116803 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 116864 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 116925 29 96.6 0 A............................ | A [116951] ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.0 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //