Array 1 251529-252529 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTKX010000001.1 Listeria marthii strain FSL W9-0497 NODE_1_length_1407140_cov_59.886002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 251529 29 100.0 34 ............................. ATCATAAAAGCACTTGAGCCAATTTATTCACCAG 251592 29 100.0 35 ............................. GAATTTGATGTAAAGTTCTCCTTTTCCGCTTTCTA 251656 29 100.0 36 ............................. TTATTAAAATCTCACTAGGTTTGTCTTTCGGTCTAA 251721 29 100.0 37 ............................. TCAATAATGTCATCATATAATCCAGTAGTTTGCGAAC 251787 29 100.0 36 ............................. TTATTAAATTTAGCAAAAACTACTTCGCGCTTTTCT 251852 29 96.6 37 .....................C....... AATACCCTTTTTTATTATCGTACCATGATAATTTTGT 251918 29 100.0 35 ............................. AATCATAATCCAGATCACTTAATTGTTTTACATAT 251982 29 100.0 34 ............................. ACAATTCCGCTGACTAGCAATAAAAAACGTTTTC 252045 29 100.0 36 ............................. TACGACGATCAAGAAATAGCTAGACTGGATAAATTT 252110 29 96.6 36 .......T..................... AAAATGGACTTTAAATCAAATCCTGTGCGGATGTAT 252175 29 96.6 36 .......T..................... CTCGGTTATTGTGATGCAAAGGTGTCTATGGACGAC 252240 29 100.0 36 ............................. AGATGCTTGGGCAGCGTGGAAACAAACGGCTGTTGA 252305 29 100.0 36 ............................. ATTAAACTGTCTAAATATGAATTCGTTTGATTAGCC 252370 29 100.0 37 ............................. CTCTTAGTTTCGCGATAACACTTTCCACTTTAGCTAT 252436 29 96.6 36 .......T..................... AGTAATGGGACATCAGAGAAAAATTATGTAGACACC 252501 29 96.6 0 ...............C............. | ========== ====== ====== ====== ============================= ===================================== ================== 16 29 98.9 36 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : TGCCACCACTTCAGCTGATATTTTATTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACTCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTACAAAATTCTAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAACAATTCGACAAACTAACAACCATTTCTATCGGCCGTATCTTAGGCCGCGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAGGATTAATGAAGAAAACAGTAACTTTTAGAGTTGCTGTTTTTTTGTGTTTGGTTGTTTGTCGACCTTTGGTAGCATGAAAAAGGCTGGGGATCGACAGAAAGATGGGAATGGTTGGGGTGAGGGGAGTTTGGTGGTTTTTGGTTTTGAAAACCATGTAGAGAAGGATGGATTTTCATTGGTTTTCAGTCGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCATTTCTATTTCCTATACAAAAAAGCCAACCAACATGATTTAGGCTTATTTTTTATCCCCACGTTAACAATTCCGCAACAAACACACCAAAAACTCCCAATTTCCTCTGAACCTCCAACTACACCACACGCCCAACCTATGCTAAACTCAAAGAGAAAGCCAATACCACATACATAAAAGGAGGATTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATCCTGGCAAGCTGCTCCTCTCCAAGCGGAAAAGTAACAAAAGACACTAAAATCTCCAAAACCATCACCATCCGAGCAGATTACAATATCCCGAAAAATATGAAAGAACTAGCAAATAACAGCAATAACATAGTCAAAGTAAAGCTGCTGCAAAATAAAGACATTGGTAAAGAAAGCAACACAATTAGTGAAGTAGAGATCTTAGCTTCCTACAAAGGCGACCTAGAAAAAGGTGATAAAATAGATATTTCAGAACCATGGTACTTAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 268714-272902 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTKX010000001.1 Listeria marthii strain FSL W9-0497 NODE_1_length_1407140_cov_59.886002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 268714 29 100.0 37 ............................. AAGAATTAGCAAAAGACCATAAAACTAAAAAGTTTAC 268780 29 100.0 36 ............................. AGAAGTTTGCAAGTGTGACAGAGACAGCGCGGAACG 268845 29 100.0 37 ............................. GTTAAAGAAGAACCAGAACCAGAACCAGAAAAAGAAG 268911 29 100.0 37 ............................. CCTTGCTTAGTGTTTCATAAAATTCTCCGTGGCTCTG 268977 29 100.0 37 ............................. AGCGATAGCGAAAGAACATTTAAAGCTAGAGCATGAC 269043 29 100.0 37 ............................. ATAACATACATTATGTTAACTTGGTAGGCTCGCTGAA 269109 29 100.0 35 ............................. GAAGCACTTTTCGCAGTAACAGAAATAGGTTCATG 269173 29 100.0 36 ............................. GAAGAAACAACCGATACCACATTTGTAAGTACTAAT 269238 29 100.0 36 ............................. ATAATAAAGTACTGGATAAGATATTGCACAATTCCT 269303 29 100.0 38 ............................. AAAGTAAATGACGTAGAAGCATCTTCTCAGACACAGCA 269370 29 100.0 37 ............................. CACTACATTATTAAAACAGTATCTGATAAGGAAAAGG 269436 29 100.0 38 ............................. AAGACTTAGAAAAAGACCACAGAACTAAAAAGTTTACG 269503 29 100.0 36 ............................. TATTTAACTTATATTTTGTCATTGTATTTCCTCCTT 269568 29 100.0 37 ............................. CACGTTTGCCCACTAACTTTTGAAAAAGTATGAAAAG 269634 29 100.0 36 ............................. ACAGATGAAGAAGATGCGGAAGACTTAATGATAGAA 269699 29 100.0 35 ............................. AAAAACATTCGTTTCTTAAAAATGTATCTGGATGT 269763 29 100.0 33 ............................. AAAACTTTGCTACCTTTCAAACTTATCAATGCG 269825 29 100.0 36 ............................. AGGATATATAGCACAAATCAATTATGACGGTACAGG 269890 29 100.0 37 ............................. AATTAACTTTGGATGTAGTCGTTCAAAACTAGAAAAG 269956 29 100.0 37 ............................. CTGTTTTTTCTTCATCACTACTAGTTTTTTCAGTACT 270022 29 100.0 37 ............................. TTTAACGTAATACTGTTCTCACCTTCTGCGAGTAACG 270088 29 100.0 36 ............................. TTTACAGCATCCAAATCGGCTGCGCGAATTTCACCG 270153 29 100.0 35 ............................. GAAAAAAGTCCAAACAGGCTCGATAAATGCTATAA 270217 29 100.0 35 ............................. TTTTTTTTATAATTTTACTCAACATGATTTCTTCA 270281 29 100.0 36 ............................. TTGCAATTGACTTGTATGAGGATTTACGTGATCACT 270346 29 100.0 34 ............................. TTATTCATGCCTCCTATTCATACTCCGGATTAGT 270409 29 100.0 35 ............................. GAAAGTTTAGCGTTCGATAACTTGGAAGGGTTAAC 270473 29 100.0 36 ............................. GTTAATTCGTCTAAGATTTCTTCTAGTGCGATTTCT 270538 29 100.0 36 ............................. AAGCCGACTAATACTATTCCCAAAACGCCCATTATT 270603 29 100.0 37 ............................. AAATTTAAAACTGTAGACACTTCTTTGGCAAAATATA 270669 29 100.0 37 ............................. CATAATCAAATACGTTTTGATTGTCCAGTGTTCTTAA 270735 29 100.0 34 ............................. GTTGATGGAATAATTTTAAGTCCGGAAGCAGTAA 270798 29 100.0 35 ............................. CGACTTCACAAAAGATAAAATGACCGTCAAGCAGT 270862 29 100.0 37 ............................. CGCATTCTTTTCCTTGAAAACGTCAAAGGGTTATTAT 270928 29 100.0 34 ............................. TTTTCCGGAGGGATAACTTCTTCGGTCGGATCGA 270991 29 100.0 37 ............................. AAAAAAGCAAAAAACGCAATCAGATTCATGGAAGTGC 271057 29 100.0 35 ............................. GAACTTTTCCGCGAATGTTGTTGATCGATTCATTT 271121 29 100.0 38 ............................. CTATTAGACGTTTTAAGCCATCTAGCTAGCTCCTGTAC 271188 29 100.0 35 ............................. CCAGTATCGGCAAAAAACACAGACGACCTGAAAAA 271252 29 100.0 35 ............................. ATATTTTACATCCAGTAACTTCTTTGTCCCAAATG 271316 29 100.0 34 ............................. CTTGTTTTCGTCTATAAAGATTATAGCTGTTTTA 271379 29 100.0 36 ............................. AGTGAAATCGCAAAGGTCCTTGGCCAGGTCGCTGAA 271444 29 100.0 35 ............................. ATCAAATTAAATATAGTGGAGCCATGGGCATGACT 271508 29 100.0 36 ............................. ATAGCTGGAAGTCTAAGCAGCATGAGGATGGCTCTA 271573 29 100.0 37 ............................. TTAATTACAGAATGTCCGCATCTTTCTGCGTACGAAG 271639 29 100.0 34 ............................. ATCGTAAAAGCACTTGAGCCAATTTATTCATCAG 271702 29 100.0 37 ............................. TATAATACACTGGTAGGCGCGGGGCTTCTATATATAG 271768 29 100.0 36 ............................. TCAGCTAACCAATCTGTACAAGAAGCCTTTGTGTGG 271833 29 100.0 35 ............................. GTAGATTTATTAGAACTTCCGGAAGTTCTATTTTG 271897 29 100.0 35 ............................. CGGGCTTCAAAAAAACAGCAAAGAAGGCAAAAACT 271961 29 100.0 35 ............................. GATTTAGTAAGAGAAGGATTCTATTCTGATATAAA 272025 29 100.0 36 ............................. CCTCTTCAAAACTTCTAATATCAATTTTTTCTATCG 272090 29 100.0 35 ............................. ATGAACCGCAAGACTAACCAAATAGCGGAGTTAGA 272154 29 100.0 37 ............................. TCATATAATCAGTATGCCAAGTTAGATACGACTGTAA 272220 29 100.0 37 ............................. GCAAATGTACAAGCGGCACTATCTAAACTTGCATCAA 272286 29 100.0 37 ............................. TTCTCTACTCCTGATTCCAAGATGTCGCTTATTATGT 272352 29 100.0 36 ............................. ATCTAAAAACACACTGACTTTCTTGCGTAGTGGGTC 272417 29 100.0 36 ............................. ATAATTAAGGCGTGTTATGAGGTTGATGCTGAAACT 272482 29 100.0 35 ............................. TTATTTCTAAGGCTAATTTTTCAAAACTATTCATT 272546 29 100.0 37 ............................. TAAATTTTTCCATTGGTCCTTCCTGTCCTTCCATCTT 272612 29 100.0 37 ............................. AAGCACCGAGTAAAAGAAAATCACCCGAGCATATTGA 272678 29 100.0 37 ............................. TATTTTAGCAAGATCTATTAAGGTGGATATTTCTTCA 272744 29 100.0 36 ............................. GAGATAGTATTTCCTGCTGTTTTTGCTAGACCTGCC 272809 29 100.0 35 ............................. GTGTACATCCAGTTAGTGGCTTGGTAGATATATCC 272873 29 86.2 0 ...............C......CA....C | C [272895] ========== ====== ====== ====== ============================= ====================================== ================== 65 29 99.8 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCTGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGGAAATCTGAAGGGATAAGTTATGACTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGGCCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CTTCCTCTCAACATCCAAACTCCAAAAATAAAAAAGACCTGGACCCCAATCCAAGTCTTTTCCCATATCACCTAAACCAACAAAACCACAACTAACGCCAAAATCGCCGGCAAACCCTGCTTCACCAAAATCCCTTTAGAAGAAGTCAGCCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCCATTCCAGCTCCCGCAAAAAACAACCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGCACTTTCTTATTCGCAAGCAGTTCCTTCTCCACGCCAAATGTCTTGGCTGCGAGTTTGGTGTTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //