Array 1 69768-66644 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPBS010000020.1 Parabacteroides merdae strain 1001262B_160229_F9 NODE_20_length_82928_cov_26.1943, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 69767 32 100.0 33 ................................ GTATTTTCGCAGTCGGGAACAGTATTTAAAAAA 69702 32 100.0 35 ................................ ATTCGCGTTTGGATGGGGAACATCATAGGCATGAA 69635 32 100.0 34 ................................ ACTTTTTGATCAAGCCGTGCAACAGCTTTATCGT 69569 32 100.0 34 ................................ CTGTCTCTTTAACTTTTATTGAAGCTAATCCGGC 69503 32 100.0 34 ................................ ATGATAAGTGGGAATCTTTTGATACATTTCAAGA 69437 32 100.0 34 ................................ CTGAAATTAATGATATTAATGAACATGTCAATCT 69371 32 100.0 34 ................................ TTCTGATAATGCTATTAAGATGTCAGGTTTGGAA 69305 32 100.0 34 ................................ ATGTTATTTGTGAATGCAAAAGGACCTTCGACAG 69239 32 100.0 33 ................................ TTTTGCACATACTCATACCAAGGACGCTGATAA 69174 32 100.0 33 ................................ CGAGCCCCGGCGGAATTGCGAAAAACCTCTTAC 69109 32 100.0 34 ................................ TGTCTCCATGATAGCACGAGTTGCCAAAGCATTG 69043 32 100.0 34 ................................ TGACGGAACTTGACCTTGAGCATTTGGCCTTATA 68977 32 100.0 33 ................................ CCACCTTTTCTGGTGCTGTTGCTGTGGCTTGCT 68912 32 100.0 33 ................................ ACGATAAGTCAACCATTTAGGAAGAATGCTATC 68847 32 100.0 34 ................................ CTAAAAATGAATATGGTTATGAAACGCTTCGTAA 68781 32 100.0 33 ................................ ATCTTAGTTTGGATCGGAAACATCATAGGCATG 68716 32 100.0 34 ................................ TTTTTGAGCAGCAATAGCACGTTTCTGACGCTTA 68650 32 100.0 34 ................................ ATCTTAGTTTGGATCGGAAACATCATCGGCATGA 68584 32 100.0 34 ................................ ATTTTGATTGTACCGCGCAGTTACCTATTTCTCG 68518 32 100.0 33 ................................ ATTTTGATTGTACTGCTCAATTACCTATTTCTC 68453 32 100.0 33 ................................ CCTGTTACGCATTTTAAGGATATACTTAAGGTC 68388 32 100.0 34 ................................ AAATATAGAACATCAAGATATCCAATACGCTAAG 68322 32 100.0 34 ................................ ATGGTCAAGCCTCCTCAATTGTTTTATTGTTGAT 68256 32 100.0 33 ................................ ACGGTACGTTAACCACTTAGGCAGAACACTGTC 68191 32 100.0 33 ................................ AAGAGAAGGATTGCCTAAAATCTCATCTCTACG 68126 32 100.0 34 ................................ ACGACTGATTTAGGCCGCATTACTCCGGTATTTA 68060 32 100.0 33 ................................ ATTAAAATACTCACGAGATTTTATCCAATTACC 67995 32 100.0 34 ................................ AATACTATACGGATGAGTTTTGTGACCCCTTTAA 67929 32 100.0 33 ................................ ACGGATGTAGATACGATCAAAATCCAAGGCCTT 67864 32 100.0 35 ................................ TGATAAAACAGGAATAAAACACAAAAAACCGTTCC 67797 32 100.0 34 ................................ AGGATTGTATGTAAGTGTAATAAAAAGAGGTGCG 67731 32 100.0 35 ................................ TTGACAGTGATAACAGTAGCGTAATAAGTTTGCAA 67664 32 100.0 35 ................................ TGTAAAGGATAGACAGGATAATGCAGGGAAAGAAA 67597 32 100.0 33 ................................ CATAGCGGTAGGAGTAGCCATAATAGGGCCTGC 67532 32 100.0 33 ................................ CTGTTTGTCTCTTACTCCTTATTCCCAATTCAT 67467 32 100.0 35 ................................ ACGAATATAAATACGATCAAAGCCCAAGGCCTTTT 67400 32 100.0 34 ................................ ATGGAAAAGAGTAGGGAGGTCGAAAGCGTGATAT 67334 32 100.0 34 ................................ AGGAACGGGTAAACATACTTGAATATGCCGCTTT 67268 32 100.0 33 ................................ TTTGAATTTACCCCCTTTAGAGGATATGGAAGC 67203 32 100.0 33 ................................ AAGGTGCTGCCTATGCTAAAACTCTCGCTGAGA 67138 32 100.0 35 ................................ GACTGTCTGAGTAATAGGATTAACAATAATGTCAC 67071 32 100.0 36 ................................ TTATATTGTACATCTATTGCCATCAAATGAATCATT 67003 32 100.0 34 ................................ AAGGTCAAAACGCTTATTATTAAGTATAGCGGTA 66937 32 100.0 32 ................................ TGACGGTAATTTAAAGGACGGTCTTACCGTTT 66873 32 100.0 34 ................................ CGTTATATGTTTTATAACATATAGTCGGTTGTTG 66807 32 100.0 34 ................................ AATGGACGAGCCGTTGAAAGAGCTGTCATACTTG 66741 32 100.0 34 ................................ AGTTGACAACCGGTACGCGTGTCCTTCGGAGTCT 66675 32 84.4 0 .......................C....GCCA | ========== ====== ====== ====== ================================ ==================================== ================== 48 32 99.7 34 GTCGTACCTTATATAGGTACGTGGATTGAAAC # Left flank : TTTAGATAATTATCCGGTCTTTTTAATGAAGTAAGTTCATGTATGTTCTAGTTACATATGACGTAGAAACGATGACTTCCGACGGACAGCGCAGGTTACGTCAGGTAGCACGTCAATGCCTGAATTATGGCCAACGCGTCCAAAATTCCGTTTTTGAATGCTCTGTCTCGCCTGCTCAATTTACCGAGTTAAGATTAAAACTATCGGATATCATCGATCATAAAAAAGATAGTATTCGTTTCTATTTCTTGGGAAATAATTATTCTAAAAGAGTTGAATACATAGGTGTCGTCACATCCTATAATGTAGAAGATGAACTTATAATATAACTGTTTGCGAACATTAAGCATTAACAAAAAGCTGGAGTTTTCGCAATCATTGATTATTAGCCTATTAAACACTCCTATTAGTTTTATTTCATCAATAAAAAATCCAAAAAGTTTATTATCGCATAAATGCATTGATAACAGACTGTAAATGTTTGCATTATTTGTAATGCA # Right flank : GAAGTTGATACACGTGTCATAGCCGTCGCACCCGTAAAGGATGCGACGGTAATGTTATTGTTGTAATTCAGACACATTTCAATCCAAACGCACTATTATAACCAACTCAATCTGTAACACCTATCACATCAACAGTAGTTCCTCTACCCAAGCACCGTCCAAAACCAATCCGGCCCGTTCATCATAACACCTTCCATCTTCCAATATAAAAATCCCAGCATACACTCCCACTGTTCCCTGTTTACATAACTGTTCGAAATCCCATTTTCTAATGGATACGCTATACTGCTGTAGCTTACGTAACAACCAAAATTCCGGGCCAATCCGCTTCAGTTCCTCCAGTAAGGTTGCACCATCACCATAGCCGACCAAGATGGATACCGAGTCTTTATCGTCTATCAACCGGAACTTCTCTGCAGCAGTTGCAAACATAAAGTGCATTTCTGCAAAACCTTTATATAACAGACCTTTTATATTAGCCTTATCAAAGGTGTTACAAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTTATATAGGTACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 7282-4599 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPBS010000006.1 Parabacteroides merdae strain 1001262B_160229_F9 NODE_6_length_285393_cov_26.0294, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 7281 32 100.0 35 ................................ AATATCAACATGTCAGTTGCGCTTATATTATCAAG 7214 32 100.0 32 ................................ AGACCAAGCACGGGCTTGCGCATTTTCTTCCT 7150 32 100.0 34 ................................ TGGCATATTCAGGGCATCATAACGAACATTAACA 7084 32 100.0 34 ................................ TGAAACATGGTCTCGTACCGCTAATTTGGACGCC 7018 32 100.0 35 ................................ TCCAGCCTTAAGAGGAGTATAATTAACACCCTTAA 6951 32 100.0 38 ................................ CGATCCGTTGCCCATGCAATCTACCAATATTGTCAGAT 6881 32 100.0 40 ................................ CGATTACGATCTTATGCCTGCTGATCGTACTCTGGTATAA 6809 32 100.0 34 ................................ CGATTGGCTTCCGTCTCCTGGAGGCATCGCGAAA 6743 32 100.0 35 ................................ TGGTCTCTTTGGCTCTATTGGAGCTGGTAGACGCC 6676 32 100.0 35 ................................ TTCACATTTTAAGGATATACTTAAGGTCCAAGCGT 6609 32 100.0 33 ................................ CGTCTCCTGGAGGCATCGCGAAAAAAATCTTAC 6544 32 100.0 34 ................................ TGCTGGCAAGGGAATACCTGAAGATGGGTGTTGA 6478 32 100.0 35 ................................ TTGCCGGTAACAAACTGTTAGCATCGAGCGAGAAC 6411 32 100.0 33 ................................ CAAATTGAACTTATCCTTTTTTTCCCAGCCTTC 6346 32 100.0 34 ................................ AGCGATATAAAGAGGTATCATATCACCAGTTTCA 6280 32 100.0 33 ................................ ATTAACAACCGTAGCCTCATAAGTAGTCAAACC 6215 32 100.0 34 ................................ ATTAAAATACTCGCGATCCTTTATCCAATTACCA 6149 32 100.0 34 ................................ CGTAATACCACTATTATCCTTATCCTGAACAATT 6083 32 100.0 33 ................................ TCATGAAAAAGAAATTGAGAAAGCTATCACTTT 6018 32 100.0 34 ................................ ATCCTTACGAGCACGAATATAAGCAGAACCGATA 5952 32 100.0 33 ................................ TTATAATAGTCCCTCTGCTGTTATGTCTCGTTT 5887 32 100.0 34 ................................ GCGATAAGTCAGCCATTTAGGCAAAACAGAATCA 5821 32 100.0 33 ................................ AACATTAACAACAGCTTTAACACGGCCTAAACC 5756 32 100.0 35 ................................ AAAAGAGATGCGCCACCAGTACCAGAGCCCAAAAG 5689 32 100.0 33 ................................ ATGAAGTTGCAAATGTTACCTTAGCATTATAGA 5624 32 100.0 35 ................................ AGCCCATTTTTTACGCTTAAAGGGATTACAAAACT 5557 32 100.0 33 ................................ TTGTGACTATGTATGCTAAGGTTAATAATATCG 5492 32 100.0 34 ................................ GTCATTAGTGATAAAACGATTATAAGTCTTTTTA 5426 32 100.0 34 ................................ CTTAAAAGTAAGAATAACAGGAGTTTTAGAACAC 5360 32 100.0 35 ................................ GTCAATCTGAAAGTAAGACCATGCTTTTTGTATAA 5293 32 100.0 33 ................................ AGGCACATGAAGTAGGTAAGGACTTGAATACTG 5228 32 100.0 34 ................................ CGAAATATGTTTTATAACATATAGTCGGTTTTTG 5162 32 100.0 34 ................................ ACGAATATATATACGGTCAAAATCCAAGGCCTTT 5096 32 100.0 34 ................................ TAATTCGAATCGTAATTATGGTGGATCAGCTAAA 5030 32 100.0 35 ................................ CCCGACCAAGCATGGACAGTCACCGGCAAAACCAA 4963 32 100.0 32 ................................ TTGTGCAGCAATGGCGCGCTTTTGGCGTCTAC 4899 32 100.0 34 ................................ ATTGCCCTCAAAAGGAATACAATAATCCCATAAT 4833 32 100.0 35 ................................ GAAATCAACCTTATAAGCATTACCGTCCTCGTCAA 4766 32 100.0 33 ................................ TTACCAGAGTGCAGGAGTTTTTTCGCAATGCCA 4701 32 100.0 39 ................................ GTCCGTTTTAGAATACAACAGTAATAATGCAACTAATAA 4630 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================== ================== 41 32 100.0 34 GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Left flank : TACTTCCAGGAGATCCCGTCTCCCCAGAGCCTGTGAAGTCATCCCACTCGTTCCCATCCGCAAGAAACCGAACAACCAGTAAATAATATTGAACAGCATCCCCCCTACCGCAATCGCCCCGATATAGGAAGCGGCCCCCAAATGTCCGACAATCGCCACATCGACCAATCCCAACAAAGGAACCGTTATATTGGATACAATAGAAGGAAGCGCTAACTGAAGTATCTTTTTATTCATTATTTATCGTATCTATAAAAACTATTCCTAACTTTGTCAGCAAAGTTACAGATTACTTTAGAAATAACATGATTACACTTATGTTTCAATAACAAAAACGCGAACCCTAAGTAATTGTAAAAAACGTTGGATGTTCGCATCCTCTATAAATCATACACTTATAGATTTATTTAGAGAATATGAACATTTATTGCTTTTCTACTTTATCATTCGCAAAATTACAATTTAAAAGTGTCATCAATAAAGCTTTTCACAAACATGGA # Right flank : CACTCTTCAAAGGCGCGTTTGAACGTGTCTTTAATGTCGCATCCTTTACGGGGACAACTATTTATAATATTTTTTGCAAGAAGATTACAGGATTAAAATATTTGTTTGTTAGAAAATAAAATATATCTTTGTTGAACAGAGTTATAAAGATACCTTATTACTCAAAGCATAAACACCTTATATTACGTTAACCTAAACATATGATATATACAAATAAAGAATACTGTCTTGAGGTTAAAGGAAGCATGGCCTGCTTTACCCGTCCGGAGATGAAAGTCGAAAGAGTTAGCTACGACATAATAACGCCATCTGCTGCCCGAGCTATTTTCGAATCTATATTTTGGAAACCAGCCATACAATGGAATATTACTCGAATAGAAGTATTAAATCCAATCAGATGGTTTTCCATGAAAAGAAATGAGATTGGAAGTTTAATGAGCCCCCGTTCATCCGGATTATTCATCGAAGATAATCGGCAACAAAAATCCAGTTTGTTACTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.50,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //