Array 1 74471-72245 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALXT01000023.1 Neisseria meningitidis NM576 NM576.contig.22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 74470 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 74404 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 74338 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 74272 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 74206 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 74140 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 74074 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 73996 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 73930 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 73864 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 73798 36 100.0 30 .................................... ATATCGTACTCTTTTACGTTATTAACAAAT 73732 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 73666 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 73600 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 73534 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 73468 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 73402 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 73336 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 73270 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 73204 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 73138 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 73072 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 73006 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 72940 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 72874 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 72808 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 72742 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 72676 36 100.0 30 .................................... CGAAGCAGGAAGACGAAATCAAACGGCACG 72610 36 100.0 30 .................................... CGTTTAAAGACAGATAACCGGATTCGCGTT 72544 36 100.0 30 .................................... CCGCAACCGTCTGCACCGTAAATGTAATCA 72478 36 100.0 30 .................................... CATGGCGGTCGTCATATGGGGGTTCCTTCG 72412 36 100.0 30 .................................... CGATGTTGTGATCGCCTTCCTGCAGGCGTA 72346 36 100.0 30 .................................... CCAAATCGGCAACGGTAATGGTTTCGGGAA 72280 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 34 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //