Array 1 26119-26889 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIQF010000004.1 Anaerostipes hadrus strain MSK.14.37 NODE_4_length_150663_cov_228.946, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 26119 36 100.0 35 .................................... AATCCCACATTCAGTACAAGTTATTAATGCCATGT 26190 36 100.0 37 .................................... AATATATAAGGGCAGACATAACAATGAACGGATCTAA 26263 36 100.0 39 .................................... TAAATCCACCACCAAAACCAACGAATTTTACTGTTAATG 26338 36 100.0 39 .................................... TGAAAGCACATTGACAACGTGTGCTTTTAGCATTTCAAA 26413 36 100.0 35 .................................... ACAAACTCACATAATTCGTTGTATCGTCTGTTCTT 26484 36 100.0 39 .................................... TGTTTCCAGAGTCTTTCAAAACATTCATTTATTGCTTTT 26559 36 100.0 35 .................................... AAAGAAGCTGATACTTTACTGATAGATGAACCACG 26630 36 100.0 41 .................................... TTGAAGCTTTTGACTGTTCTAAACTGTCTCATAATTTCACT 26707 36 100.0 38 .................................... GGATATATTTCCCTGTTTCTCTATCATAGTGATAGCAT 26781 36 100.0 37 .................................... TGTAACAGATTTAACTCGACATCATCGCATGTATAAT 26854 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 11 36 100.0 38 ATTAAGAAAATAAAAGCCCCGATAGGGGACGAAAAC # Left flank : TTGACGAGAGTATCAATACGTATTATGATGAAACTATTCTGGATGCAATTAATCATTTTTTAGAAAGTTATTATCATTTTCTGAATGGATTTGGACCTGTTAATGAAGAACAGGATATTCTATATTTAGGCGGAGGAACTGGTTTTGCAACGAAAACAATTCTTTATGGAATTTTCTCAAAGAAAGATGCCGTTCGTGTGATCAGTAAAATATTTGATAAAACTATTTTTAGGAAAAAGAATGAAAAACCGCAACATATAAATGATGTTCGTCTAGGTGTTTCACCTCATATTAAGAAGTGTACCGAGTATGCAGGACGTGAATATGAATTCGGTAAGTGCAAAGTTTATATAGAAGAAATATGATTTTGCCCCGATGACCTGTTTATGCGGTGTAGAGCCTTATTTTGAATAAGAAAAAGATAAAAATTTATCTCAAAATAAGTTTACACCGCAAAACATCTTTTTAACCCGCATAAATACAAGGATTGTAAGACCAGG # Right flank : CTAAAAATCATATATTTGATACTTACCTACTTTTCATTGTAATTCACTCAAAAGAACTCTAAAAAATTTTCATGATTAGTAGAGAAATAATCGTTCATTATTAAAAAATATGTTAAAATAACTTATAGACACTCTGATAAGGGACGAAAAAAGAACAAATTTATTATAGTGTAGAAAAATCTTGAAGATAAAACACCCCGACAGGGGACAGAAGAATATAACTTATTCTAGGAAAGGAGTGCCTATGTCATGTTTATATATTACTGAAAATGGGTCTAAAGTCGCTGTAAAAGGTGGGCATTTTATTGTAGAATGTCAAGACGGATCAGAACGCCTTGTTCCGAAAGAAACGCTTGAATCAATTGTGATATTTGGAAATGTTTATTTGACAGTACCATGTATTAAGGAATGTCTGGAGCGAGGAATAGCAGTATCCATGTTTTCAACAAAAGGAAAATATTTTGGGCGGATTGAATCAACAAATCATGTGAATGCAAAGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAGAAAATAAAAGCCCCGATAGGGGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 44673-44108 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIQF010000012.1 Anaerostipes hadrus strain MSK.14.37 NODE_12_length_80457_cov_143.876, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 44672 33 93.9 35 ..............................G.C TTCTTCCATTGCCTGATAAAATGCCCTCATAAACT 44604 33 97.0 32 ..............................G.. CCTTCATCCAGCCATCCTTCCAAGGTATAACC 44539 33 100.0 33 ................................. ACGACTGTATTGGTTGTAACTTTGTTAACGCAA 44473 33 100.0 34 ................................. ACTAATATGCCATATATTATTGAAATTGACGGAA 44406 33 100.0 33 ................................. TGAGGGAGACATCATGATTTTACAGCTTATTTG 44340 33 100.0 33 ................................. TCCCTGCAATCACAAATCAAAGAAGCAAAAGAT 44274 33 100.0 35 ................................. TTGTGTATGATCGGGAACAGGCTGAAAATGATGTC 44206 33 100.0 34 ................................. ACGGAAAGTATGACGAAAAGAAGAAAAGCTTAAC 44139 32 72.7 0 ...G.......T...A..A..CAT...C..-.. | ========== ====== ====== ====== ================================= =================================== ================== 9 33 96.0 34 GTCACTCCCTTCGTGGGAGTGTGGATTGAAATT # Left flank : TATCCAGCATTTTTGTGGAAATGAGGTGATAAAATCAATGTTAGTATTAATTACCTATGATGTAAATACAGAAACAGCAGCAGGAAAAAAGAGACTGAGAAAAGTAGCAAAGCAATGCGAAAATTATGGAAGGCGAGTACAAAATTCTGTATTTGAATGCATTGTTGATAATGCACAATGTGTGATGCTAAAAGCACTCTTAAATGATATCATAGATGAAAATGTGGATAGCTTGCGTTTATATTATTTAGGGAATAAATATCAGACTAAAGTAGAACATTTTGGTGTAGATAGAGGAATACAAGTTGATCAACCATTGATTTTATAGTGATGCGAGTATATAGCAAACATAAAAAGAGTGGGAGATTCGCACTTAAAATATGAAGTAAAAAATAAATTTGTATCTAAAAATAAATAGTATTTGAATGATTTTTAGATATAAGATAAAATTTATTAGTGATATTGAACAAAAAATTAGAAAATTATTGGTTAATATTGCT # Right flank : ATATTTTACTTGGTGTGGGTTATATTAATATTTGCAAATTGTCATCAATATTGTAGTAACGATAGGCGGATATACATATAATGGAAGCTCAAGAAAGGAAGAAATCAATGAAACGATGTAAAATTACCGCAGTACGGAAAACAGAATATAAAGATCTAATGGAAAAGTATGAAAATCCGATCCAGCATGCCTGCGATATAGAAGAAGGACAAGTATTTATCACAGAAGGATGGAAACGACCAGAAGGATTTTGTGAAAGTGCATGGGAGAGTATTTCACCATTTGTTATGACATTAGCATATGGAGGTAGTGATATTTATGAAGGCTGGATGAAAAATAAAAATTCAGCGATGATCAGTTGCAATGATGGTTTCAGACCGGTAAGTTTTTACATTGAAGTGTTAGATGAGAAAATATATTAACGAGGAGATATGAATCATGTCGACTAAATTTGTGATGATACAAGCAATAGGATTCTTAGGAACAATCACATTTTTCTT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTTCGTGGGAGTGTGGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 102062-103293 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIQF010000007.1 Anaerostipes hadrus strain MSK.14.37 NODE_7_length_127869_cov_111.804, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================================================================================================================== ================== 102062 30 100.0 35 .............................. TGACAAAAGATGATATGCTTATCACTGGCGTAAAT 102127 30 100.0 36 .............................. TTGTTCTTTCCTTTCTGCAAATTCCATGCTTTCTGC 102193 30 100.0 35 .............................. ATGATTCGATTGATTGAAGTAGTAGCATAGAAGAA 102258 30 100.0 35 .............................. AATTGATGGTCGAACAGACACCTGCAGGTATTGCA 102323 30 100.0 34 .............................. TATAAATTTTCTCTCAAATCATTAAATGTAAAAT 102387 30 100.0 37 .............................. TGGGCATCCGATCAATGGAAATGTTCTGATTATCGGA 102454 30 100.0 35 .............................. GAAGTGGTGTGTAACGCATTTGCCATATTGGCAAT 102519 30 100.0 35 .............................. AATAGATGCGATTAAAGACAGAGCAGGATATAGTA 102584 30 100.0 35 .............................. TCCAAAAGTATTTATAGCAAAAGGAGAAACAGAAA 102649 30 100.0 35 .............................. CAGAGAGAGATTGCAAGAGAAACAGGATTAAAAAC 102714 30 100.0 34 .............................. TCAGCTTTCCGACAGCGACTGTGTTTTCTTTTAC 102778 30 100.0 35 .............................. CAAATAATGGAAGTTTGGGAACTTCCTACATCCAT 102843 30 100.0 37 .............................. ATGGGAGTATGACGATGAAGACAATCTTATCGGCATG 102910 30 100.0 34 .............................. TCATGTATCCCTGACTTGTTGCGATCTCTTTCAC 102974 30 100.0 34 .............................. TTGACTGCGATCGGAGACATTCGATGCAAGTCAG 103038 30 100.0 35 .............................. GCTGTCGTTGCCGGAAAAATCTGTTCACCTGCTTT 103103 28 86.7 133 ...............A......C.--.... AACATTTAACGAAGGTATAAAATAGTCGGTGATACATGCTTATTTTTATCTAAAAAAGAATATTAATCATTATAAAAGAAAAGATAATTATTAAAAGATATTTGACAAATAAGAAAAGAAAGAGTATTATTAT 103264 29 90.0 0 ...............-.A....A....... | A [103266] ========== ====== ====== ====== ============================== ===================================================================================================================================== ================== 18 30 98.7 41 GTTAAACAATAACATGAGATGTTTTGAAAT # Left flank : TATTGTTACGATTACGAATGGGAAGGTGGATGTGTTGGTGAATAAGAAGGATCTGTCGAAAGTTGAGAGGAGTCAGATTGAGGATATTGTGGTGAGGAAAGTGGGGTGCCAGTTGGGGGATGTGGTGATTAGTTCGATTAAGACGGAGGAGTAGGTGGAAGTGCATATGGAATGGAGGGTTTGGGTTTTCTCTGGATGATGTTCTTGGACAATTTTGGAATAGCGTTCGGAGAGAATTTTATGTTTTTATATGGATTTGTATATTAGGGTTGCATATTTGATTGATTGGATTCATAATAGAAAGTGTCAAGAAACATGGGGAAATGAAGTTTTTGATATTTTACCAAGTGATTTTTTGAAAAAGTAGTAAAAACGGCTAAAATACATTGTTTTTCAAGAAAGGTTAAAATTAGTAAGGGGGTTGGTAAAAATATTGAAAAAGCTTATAAAATCGTTCTTTTTTGTAAAAAAATCTATTTAAAAATAATGATTTTTCGTTG # Right flank : TTTATACAAGAAAAGGTAATATTTCTTATCTTAAACCGTAACATGTAATGTATCACAACAAATCAACCAAAGAAAACAGTGAATGGAGGGATGCTGATGCTGGTATTTGAATACCAATGCAAGCTCAAATTTCTAAAAAGCATAAGTCATAAAACAATAGCAGGAAAGATAAATTACTTTTTAGACAGTGTACTTGCAAAAGATCAAGAATTTTTACAATATCATGAACATAAAGGTTATAAATACTATGTAACAGATGCACCATGGCCAATTGAAAAAGATGGTATTTATAAAGAAGGTAAGGTTTATACTCTAAGAATCAGAACCGTAAAACAAGAATTAGCAGAATTTTTCTCTGAGAAATTATATGCCCATACATCAAAGGAACTTTTAGGGGTTGGTGGGAAATTGAGAATTATTTCTAAAAAACATATTCAAGAGCTTTATTCTATTACACCAATTGTAATTAAGAATGAAGAAGGGTACTGGAGAGGAAACAT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.52, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAACAATAACATGAGATGTTTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 110242-111901 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIQF010000007.1 Anaerostipes hadrus strain MSK.14.37 NODE_7_length_127869_cov_111.804, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 110242 30 100.0 35 .............................. TTGTATGTGTATGATACTCTGTCTCCACCGTCAAT 110307 30 100.0 36 .............................. TTTTCAGAAGCATTTAAAGCAATGAAAGCAGGAGTA 110373 30 100.0 35 .............................. AACAGAACTTCTAATTCTTTTGCCGTTGGAAGTAC 110438 30 100.0 35 .............................. AACAGAACTTCTAATTCTTTTGCCGTTGGAAGTAC 110503 30 100.0 34 .............................. TCCAACGACCAATTAAATGATTCACAAATCATAG 110567 30 100.0 34 .............................. TACAAGATAGTACAGCCAAACACCTATATTGTAT 110631 30 100.0 34 .............................. TTTACAATTAGAATTTTATTAACTGTCCTATCAG 110695 30 100.0 35 .............................. ATGGAAAATTTCTTGAAAATGAGATTCTGGGGTAT 110760 30 100.0 35 .............................. GGCGCTTTTTGTTCTGCTACAGTAGTTCCATTATA 110825 30 100.0 36 .............................. ATACTATTGCATTAAAAACAAAAACAAAAGTGGCAC 110891 30 100.0 34 .............................. AACACTATACAGGCAGTGCTAGTCAGAATAAAAA 110955 30 100.0 36 .............................. TCGTCCTCTAAATCTGTTGCTTGTGATCCTGTTGTT 111021 30 100.0 37 .............................. TCGCATACACCTTCTCTCACATCTCCGTTTGTCGTGT 111088 30 100.0 36 .............................. GAAGGATTACGCAATGATAATTCGTAATTTCCGACA 111154 30 100.0 35 .............................. TGTTTGAGACAACACTTTTACAATACGAGAAAAAT 111219 30 100.0 34 .............................. AAGCAATCCAGGTATCTAAATTAACTGCTACTAC 111283 30 100.0 35 .............................. ACTTTTTCCTTTGCTTCTTTCTCAACTTCTGTTGT 111348 30 100.0 36 .............................. AATGTATCATCTGCCAGAGCTTTGATATCTCTTGTG 111414 30 100.0 35 .............................. CTCTTTACCTCACTTTTTATGTACTTTATCAAATC 111479 30 100.0 35 .............................. TTCGTTTCTTTTAAGTAGTCTGCATCGACATAGAA 111544 30 100.0 36 .............................. TGTTGTCGCATGGTGCTTTTTTCGTGAAAAAATTAG 111610 30 100.0 37 .............................. TTGACTATGAGGTCACAAGTGAGGAGATCGGAGATGC 111677 30 100.0 36 .............................. ATTATTATTTTGGAAAAAATGAACAATTGCATAATT 111743 30 100.0 35 .............................. GTTGGTATATTTACTTCCTTTAGTGGGAAAAAAAC 111808 30 100.0 34 .............................. CGTATCAGAATCACGTCGCCCAACATGGAATTGG 111872 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 26 30 100.0 35 GTTAAACAATAACATGAGATGTTTTGAAAT # Left flank : GATGATAATAGTTGGAGCATGGATATTGTTTTGTGTCGTAGACTTGAATTAGAAGATGGAACTGTTTTAGATGGCGAAGAAGTTTGGAATGAATACAAAAATATATTGGAAGATTCAGATATGGAATATGCAAAAAAGCAGATAAAACTTTCGGTTGCTCGAAGCAATCTTAAATATTTTACATATAGAATCAAAAAAAATTCAGATTTAATATATAATGATATTTTAGGAGAACTTCGATGTATCTATGATGGAGAACAATATTTTGAAAACGGAAAGTTAAACAAAAAGTTGTTGGAACAATCAGGAGGATTATTTATTGATATTTAAAAGTACAAAATTTTACCAAGTGATTTCCAGAAAAAGTGTTAGAAATGGCTGAAATATGTACTTTTTTAGAAAAACAGTAAATTGAGGGGGCACTTGGAAAAAATAATGGAAAGGTACATAAAATCGTTGTTTTTTTAAAAAGACCATTAAAAAATGACGTAAAATCGTTG # Right flank : TACCTCTAAGGTCGGGGATGAATTCGCTCTCGCCATTAGTTAAACAATAACATAAATTTATAAGCACATTTGATTAATTTCTAATTTTAAGGAGGAGTCTATGAGAGTTAATGGAACATTAATCAATTATTATTTCCATTGTAAAAGACAGTGTTATTTACATGGAAATAGGTTGAATCTTGAAGATAATAGTGAAATCGTACAAATTGGAAAGGCAATTCATGAAGAACGATTACAAAGTTCGAACAGTGAAATAGCAATTGAAAATATTAAATTAGATAAATTAACAAAAGAGTATTTAACAGAGGTAAAAAAATCAGATGCTGATGTAGAAGCAGCAAAATGGCAATTATTATATTACCTAAGTGTTTTAAAAAATAAAGGAATTTATCGAAAAGGGAAACTAGAATTTGTTGAAAAAAACAAATCTAATAAAAAAGTAGTAATTTTGGAATTAACAGAGGAGAGGGAGAATGAATTAAAAAAAATTATTGAATCAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAACAATAACATGAGATGTTTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //