Array 1 420562-422847 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDKY01000002.1 Salmonella enterica subsp. enterica serovar Kentucky strain 253 NODE_2_length_655957_cov_25.4624, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 420562 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 420623 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 420684 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 420745 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 420807 29 100.0 32 ............................. CCTTTCGTGTCGTCTGCCTCGCTGGTTACCGT 420868 29 100.0 32 ............................. CCTCGCATAAACGAGGCTCGCTCTGAATCTGG 420929 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 420990 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 421051 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 421112 29 100.0 32 ............................. TCTCGCAAACATCCTTCAGGCAAAACCACGGT 421173 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 421234 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 421295 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 421356 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 421417 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 421478 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 421539 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 421600 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 421661 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 421722 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 421783 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 421844 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 421905 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 421966 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 422027 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 422088 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 422149 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 422210 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 422271 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 422332 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 422393 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 422454 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 422515 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 422576 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 422637 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 422698 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 422759 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 422820 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 38 29 97.8 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 440480-442583 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDKY01000002.1 Salmonella enterica subsp. enterica serovar Kentucky strain 253 NODE_2_length_655957_cov_25.4624, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 440480 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 440541 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 440602 29 100.0 32 ............................. GCATTGATGTAACACTCCTTAACTGCGGCGGC 440663 29 100.0 32 ............................. CGGTCTGTAGTCGCATGGCACGTCCTTCGGGG 440724 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 440785 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 440846 29 100.0 32 ............................. CTGCGGGTATCAAAGCGTTCAACGTTCTTGTC 440907 29 100.0 32 ............................. TTTCTGACTTTTGAGGGGGATATTTAGACGGG 440968 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 441029 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 441090 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 441151 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 441212 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 441273 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 441334 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 441395 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 441456 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 441517 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 441578 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 441639 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 441700 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 441761 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 441822 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 441883 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 441944 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 442005 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 442066 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 442127 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 442188 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 442249 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 442310 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 442371 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 442432 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 442493 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 442554 29 100.0 0 ............................. | A [442581] ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //