Array 1 529825-528577 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBYW010000001.1 Actinopolyspora biskrensis strain CECT 8576 Ga0372422_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 529824 28 96.4 33 ..A......................... GACCGGCGGCGGGAACTCCGGCAGCTCTGGCGA 529763 28 96.4 33 ..A......................... GGCGACTCCGTCACAGCTTGAGCTGTGACGGGA 529702 28 92.9 33 ..A.......................T. TGGCGCGCCCTGAAGGTAGGCACGACGTACGTG 529641 28 96.4 33 ..A......................... CGTAGTTGAGGCGTGAGCGGTTTTCCGTGCTCC 529580 28 96.4 33 ..A......................... CGTCATCCGGCCGTTTTCGTCCCACCATTCCTT 529519 28 96.4 33 ..A......................... GAGTTCCTGGTCCTCGCCCACCGGGCGGGCCTC 529458 28 96.4 33 ..A......................... CCGCGGGCGTTCGGTCTCCTGGCGGGTCGTGAT 529397 28 100.0 33 ............................ CTGCCGGTGCACGATCACCGTCAACACCGAGAC 529336 28 96.4 33 ..A......................... CCCCGAGTCCCGGCAGGACTGGGCAACCACCCG 529275 28 100.0 33 ............................ GGGCCTGTGGGACGGCATCAAAACAGTATTTCA 529214 28 100.0 33 ............................ GGCATCCTCGCTTTCGGTTACGGCACTCCGAGC 529153 28 100.0 33 ............................ CCGCTCACCAGCGGTGACGAGCATGGTGTCGAT 529092 28 100.0 33 ............................ CGCGCCGAGTCGTCCGATGTGGTGGTGGATTAC 529031 28 100.0 33 ............................ CAGACCGGCGACACCACCGACGCCGCCGGCACG 528970 28 100.0 33 ............................ TGGATCCGGGGATGCCGTTGTTTACGAGCTACG 528909 28 100.0 33 ............................ TAGCAAGGACTACGCCGAGCGGATCATCGAGCT 528848 28 100.0 33 ............................ CAGCACGAGCTCGATCCTGTTGAGCGCGGCCCG 528787 28 96.4 33 ..G......................... ACCGCAGCATCTCCTGCAACAGCTCCCGCCACG 528726 28 100.0 33 ............................ GGTGCCTTGACCATCCGGACGATTGAGCTGCCC 528665 28 92.9 32 ..A.......................T. CCGGCCAGGGTGGGAACAGCAGTGGCCGCTCC 528605 28 96.4 0 ...........................T | C [528602] ========== ====== ====== ====== ============================ ================================= ================== 21 28 97.8 33 GGTTTCCCCGCGCAAGCGGGGGTGAGCC # Left flank : AACAACAACTCTTCTCCCCCAACAGCCGTTCCCCAGCGGGGTGAGGCGCCTGCTGGTGGTGTTGACCATGGAGCAGCGGACGATAGCTTCATGGCATTCGGACAGACGTTCGTAGCCGCAGAAGCTGCGGCAGTGCTGGTTGGTCCAGCCCCAGGAGCTTTCGACGACCCCATCGGCGCAGGAAAACGATGGAACCAGCTTGACCAGCGATTTCGATGATAGTCGCGGTGTCTTCGTGGTAGACGACGAGTTCGTCGTACCTGACGACCACGGCACGGTAGTGGTGCAGTGTTCCCGAGTCACCCGGCCACGAGATCCGCGTAGCAGCCAGTGTTCACATGCTGCTACGAGACCAGACGGCCATGCTGCTACACCAACCGCGCCATCGGTGGCAGACTGATCGTCAATGCCCCTACCCGCAGCTTCCGACGTCACAACACGCAAGCACCCCACAAGATCACAAAACGGTAAACCACTCTGATTTTCCCAGCACAAAAAGG # Right flank : CACCGGACGTAGCAGTGGCGGGACACGATCGCCGGTTTCCCACGACCTTGTCGAGGACTCGTGCTCGATAGCGCGCCCCGTTGCCAGAAATCACTTGCTGGATACCGGAAATGCCGTGCGCAACGAAGGAGCCCCATGTTCGGGCGAACAATGGGCAGTGCGGCCCTTTTTATCGGGTAGGTTCTGGTGGAGGCCATTCGCGAGCAGCCGTCCACAGCGATGTGCCGGGTAGCTACCGCCCAGCATGACGGTCCTGATCGGCTCCTCGTCCGCGAACGAGCCATCCTGCCCCGTCACAGAGATCACTCCGGTCTGCTTGACGTCCACACGAACCACGTAACCCGGTTCGGGTAGGGCAGCGGCGGAAGACTTTCCTGAGGCCGGCGTGTTCTCGGCTGAGTTGATGCCTACGCGGGCCGGTCGTTCGCCTCAAGCCACGCGCGAGTTTTCGTTCGCTCGTTCCTCGCTACCGAAAACATCGCGCTCTGGCGGCTTGAGGC # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTCCCCGCGCAAGCGGGGGTGAGCC # Alternate repeat : GGATTCCCCGCGCAAGCGGGGGTGAGCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 547349-547016 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBYW010000001.1 Actinopolyspora biskrensis strain CECT 8576 Ga0372422_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 547348 28 100.0 33 ............................ CTCGTCGAGTCCGCCCGGATGCGGGTTGCTCTT 547287 28 100.0 33 ............................ CGCGCCCACCGCCGGCGGGAGCGATCATCTTCG 547226 28 100.0 33 ............................ CCCAACTGATCTTGGGCTGGATCTTGCCCATGC 547165 28 100.0 33 ............................ GCAGCCTGGTAGTGAGGCGTGGTCGAAGGTTGT 547104 28 96.4 33 .............T.............. CTCTGGGGGTGTGAGATGGGGCGCGTGCGTGAG 547043 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 99.4 33 GAAGTCCCCGCGCGAGCGGGGGTGAGCC # Left flank : GACCGTGCTTTGGGCAGCGCCGGATCCGGCCGGCTCAGTGAAGTGGGCTCGGCCAACGCCACTGGAGCATCGGGCACACCTTCGCCTGGCTGAGCGGCTACCGTCGACTGACTCTGCGCTACGAAAACCGTGCCGACCTCTTCACCACCTTACTCACCCTCACCTGCTACAAAAACTCCCCATATGAGACACCCTCTTAGAAGTTGGAGCCAGTCGTTGATGGCGACGATGGTCGCGGTGTCTTCGTAGCGGACGGCGAGTTTGTCGTATCTGATGACCACGGCACACTGGTGAATGTTCCCGATCTCGCTTCTGGCTCTGAGGCCGCGTATCAGCCAGTGTTCAGACGCTGCTACGAGACCAGCACGCTACACGAACCACGCCATCGCTGGCAGACTGATCACCGATGTTCCTACCCGCACCTTCCGATGTCACGGCAAGCGAGCGCCCTACAAAATCACAAAACGGTAAACCACTCTGATTTTCCCAGCACAAAAAGA # Right flank : GTGGCTGACCGCCGCGGCCGAGCAGGCCCGCATGCTGCTGGGTTTCCCCGCTCACACGAGACGACTAGACTCACCGGGCGCTGCAGCTAGCAGTTTCCCGTGGTGGGAAACCGCTCGAGGACGTGCCAGGTGTAGTGGTGATCGGCGCGGGTGAGTTCGACCAGGCGCAGCTCAGTGATGGTGACCTCGACAGGAGGCAGTGCCCGTGCCCGGCGCACAGAGCGAATGATCTCCTCCGGTGACTGCACCCGATTGCTGTAGGCAATACCCACATGGGGCCGGTACATCCGCAGCGGGTCGATGTCGGCATGGCCCGAGGCCGTCGACACCGCGCGATACACCCCAAGCAGCGGAGACCACGGAGCAACGCTGAACCGCACAGCCCCCGGAGAACCGGCCAACGGGATCAGTTGCAGACGAAACGGCTCGACCCCACGGCAGTGTTCCCCACGGCCCTGGCCGCGGCCCGCAACGTCGGCACGGGCACCTCATCGACATAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCCCCGCGCGAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 553832-553440 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBYW010000001.1 Actinopolyspora biskrensis strain CECT 8576 Ga0372422_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 553831 28 75.0 33 .GTT........T........G....TC CAGGCGGGACTTGTGCCGCTCCATCAGGTTGTC 553770 28 75.0 33 .GTT...T....T........G.....C CAGCACGGCCACGTGCGCCCGAGTCAGCCCGAG 553709 28 78.6 33 ..TT.......T..C......G.....C CCGACCCAGAGCTGGAACTCACCCCCCAGGAGA 553648 28 100.0 33 ............................ CCCGGGTTCGACGCAGGTGCGGCACACGTAGGA 553587 27 89.3 33 ...C.................-.....C CATGTCCAGGCACGTCGGCAACACCCATAGCTC 553527 27 85.7 33 ...C.T...............-.....C CTCCATGGGAACGCCTTCTGACGACAGGGTTTA 553467 28 85.7 0 .............A.......G...T.C | ========== ====== ====== ====== ============================ ================================= ================== 7 28 84.2 33 GAAGTCCCCGCGCGAGCGGGGATGAGCT # Left flank : GCTGCCAGTAGACAGGCCCGAAGCCGTTGTTGCTCGCTCAAGAGTGTAAGGAGGCCGTTCGTGTGATCCACCGGCGTCCAGAGAGATGAGCTGTGCAGAAGCTGTGATTCGGGCCGAGCTGAACATGCCGAGCGGGGCAGCTGTTCTCGACATCGCGGACTCTCCCACATCCGCATAGAAAGGACAGCTCGATAACCGTTCCCTTCGCGGTCAAGCGAGGCACAACCGGATCGAAATATCACCTGATCTGCAACGACGTCAGTGCTTCCTTGACAAGGATACTTATTAACGACGCTCATCCGGTCCTGCCACCAGACCGCGTAGCAGCCAGAGTTCACACGCTGCTCGAGGCCAACACGACCATGCGGCTACACGAACTACGCCTTCGCTGGCAAACTAATCGTCGATGCCTCTCCCCGTATCTTCCGACGTCGCGACAAGTAAGCACCCCACAAGATCACAAAACGGTAACGCACTCTAATTTTCCTAGCACAAAAAGG # Right flank : CCGCAGTTGTACACGCCGCTAGACCTCCTCATCGGTTTCCCCGCTCGCGCAGAGGGTGAGCCACCCTAGCCCGGTCAGCGTCGGCGTAGTTGTACACACGAGCGCCCCCGGAACTCCGCGGAGCTCCGGGCACTCTTTTCGCATGGGGCCGTTGATTCAGAGGGCGAGGTAGCCCTGCTGCCACTGCACCGTGGTGGGGCGTGTCCCGGTGTGGGTGTATTCGGTCAGGGCCCGGCGGACGTCGGTTTGGGGGAGTGAGGCTGAGGCGGGCAGGAGGTCGGGGCCATCGCAGGCGAACACCAGTTCGGGGGCGTCCTCGGGGGCGTGTGGGTTGAAGGTGTCCAGTACCTCGGCGGTGCCGATCCAGGTCATCGCTGCCCATCCGGTAGGCGGGTGGGAGGCCACCCGAAGGTAGGCCGGTGGGAACAGGGCTCCGCCCTCGTCACGGTCGGAGCGTGCGGGCCGGTCCCAGGAGCAGACGATGGTGGTGCGGCTGTAGT # Questionable array : NO Score: 3.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.21, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCCCCGCGCGAGCGGGGATGAGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 247277-245835 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBYW010000005.1 Actinopolyspora biskrensis strain CECT 8576 Ga0372422_05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 247276 37 100.0 37 ..................................... TGTTTGCGCTGTCGGGGCGGGCGCATCCTCGGGTAGG 247202 37 100.0 37 ..................................... GCACATGTTGACGGGGGTGTGCGCAGCGGGGTGTGGT 247128 37 100.0 36 ..................................... TCCGAAGCCAGCGTCATCCTCGCCAAAGGCGAAATG 247055 37 100.0 38 ..................................... GAGTCGTGCATGAAGGCCGCCGCCGGGCCGGATGCTGA 246980 37 100.0 36 ..................................... TGGAGTTCTACCGCAAAAATGGCGTTGGTCGTGCTG 246907 37 100.0 38 ..................................... CCGCGAGCTCGTCGGGAACTCCGTCGAGGTCGACGGAG 246832 37 100.0 37 ..................................... CCGAAACCGGCGAAAAGGTACCCGTCGACCCCGACGA 246758 37 100.0 38 ..................................... GTTGTGATGCTCGGCGACCAGGTCGATCGTGGTGTGCA 246683 37 100.0 38 ..................................... CGCGTGTGTCGGTGCGGTCGTGGGGCGAGGAGAGAAAG 246608 37 100.0 38 ..................................... CCGACGCGGAACTCCCGGCCTCCTGGCACCGCGCGGTC 246533 37 100.0 37 ..................................... CTCGCGAATCCGAACGTGGCCAACGTCCTGGCTCCGG 246459 37 100.0 37 ..................................... CGGGCCCGGCCATGTCGACCTGGGTGGATTGCTGCTG 246385 37 100.0 36 ..................................... CTTGTCGGTGAGCTGGGTTTCCACTGGGATGCCGGG 246312 37 100.0 36 ..................................... CACGCCCAGTGGGAAAAGGACGCCTCGCTGCGGCTG 246239 37 100.0 37 ..................................... GCCGCGTTTACCCACCGGCTGGTCCAGCTCGAGCAGC 246165 37 100.0 37 ..................................... AACTCCGTGACATCCTCCCGGATTGACGAGATGTCGC 246091 37 97.3 38 ..............T...................... GACGGGTGGTGCGCCGCCCACGGGATCGACCCGTACAC 246016 37 97.3 35 ..............T...................... CAGTCCGCGCCGACGATCGTGGCCGGGGCGTAGCC 245944 37 94.6 36 ..............T.................A.... CGGCTCAACGAAGTCGAGGTCGAGTGGTCCCCTCCG 245871 36 83.8 0 ..........................CC-....T.GG | C [245840] ========== ====== ====== ====== ===================================== ====================================== ================== 20 37 98.6 37 GTGGCGCCAGCCCTCCGGGGCTGGCGAGGATCGCAAC # Left flank : GCCATCTGCGCGGGGATCAACCGAGCTACACCCCGTGGATTGCGAGCTGACCGTGGAACTGCTGATCACCTACGACGTGGACACAACCACAACGGAGGGACGTCGTCGGCTCAGGCACGTGGCCAAGGCGTGTGAGGCATACGGGAGCCGCGTGCAGAAGTCCGTGTTCGAGGTCGTGTGCCGCCCTTCCGACTGGATGCACATGAAGCAGCGACTCAGCGAGATCATCGATCCGCACGAGGACAGCATCCGCATCTACTCCATGGACAGAGGAAGCTTCGCATCGGCCGAGCACTTGGGGCAGTCACCACCGGCACCGCACGATACGCCGCTGGTGTTCTGAGTTTCCGGCAAGAGCATCAGCGAGTGACGATGTACGGCTTCGGAGGTGCAAGCGTGTCTCGACACGCCGCGAGGTTCCCAAGCACCTGCTCGGCGTGTCGGTCACGGGATAGTCACAACGGCGAGGTGACTACCCTGAAAACCCCTGCTCAATCGCC # Right flank : TCACCTCGAACTCATTCGGCGCGCAGGAACTCGGTGATTGCCGTGTTCCAGTCGAAGGTGGCCAGGCCGTCGGTGCCGCGGCTGGTGAGGCTGTCCGGATCGAGCAGGCGCACGCCGGCATCGGTCAGCAGCCGGATATTGGCCGGGTAAGCGGGGTGCCGGCGCAGCACGGGCTTCACGCAGGGCGCCAGGGTGATGGGCACCTCGCCGGCCAGCAGCTCGTTGACCAGGCTGACCGCCAAGGTGTCGCTGACACCGGTGGCGATCTTGGTGAGGCTGTTGAACGTCACCGGCGCGACCAGCACGGCATCGGCCTTCGGCAACGGATCCTGCTCGCTGGGCAGCCTGGGGTGCACACGCACCGGACGACCGGACCGCTCGGCGAGCTCCTCCCCGTCGACCCAGTCCGCGGCGGTGGGAGTCAGCACCACGCACACGTCCCAACCCGCCCGGCGCAGCAGCCCGACCGGTTCGGCCAGCTCCCGCACCGGCGGCGCAGC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCCAGCCCTCCGGGGCTGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-17.40,-19.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 255404-256618 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBYW010000005.1 Actinopolyspora biskrensis strain CECT 8576 Ga0372422_05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 255404 37 100.0 36 ..................................... TCGGTGGCGAATGCCTCGATGCCGTAGTTGCCGAGC 255477 37 100.0 36 ..................................... TCGTCGGCTCCGATCGGGATCGGCCCGGACCGGGTG 255550 37 100.0 37 ..................................... GCGGGGGCGATCCTCGTGCTATCCGTGGTCGCGTCCG 255624 37 100.0 37 ..................................... ACCGGCGGGACCGGTGGGCAGAGCAGCAACAAGCCCA 255698 37 100.0 37 ..................................... GGTCTTGCCCACCGGGTCTTGGGGTGATCAACTCCCA 255772 37 100.0 37 ..................................... CGACCCCGTCGATCCGACGGTGGACGGCAGCCAGGAC 255846 37 100.0 36 ..................................... CTCCGGGCTGGCGTAGCGGGCGAGCGCCTCGGAACC 255919 37 100.0 36 ..................................... GTCGTCGCGCATGTCGTCCTCCTGGGCTGTGATCTG 255992 37 100.0 36 ..................................... GGAGTGTGACACGGAGCCGGAGCGGCCCCAGTTGGG 256065 37 100.0 37 ..................................... CCCATTTGATGGGCGCGAACAACCGCCCGCAGGGACA 256139 37 100.0 36 ..................................... AATAGCGCGACGTGGCCGCTGTTGCGGGAGCTGGTG 256212 37 100.0 37 ..................................... GGCGTCCTCCGAGGTGTCGTCCTTCAGCGCGCGGAGC 256286 37 100.0 38 ..................................... TGGAGTTCGCTGCCCTTGGTGTAGGGAGTGCGCCCGGG 256361 37 100.0 36 ..................................... TCCTGCGTGCAGCGGTTCAGCGATGGAGACGTCATT 256434 37 100.0 37 ..................................... GATGAGTACTGACATTGCCGCGAGCGTTGAGGCTGCG 256508 37 97.3 36 ..............T...................... TGCGCCTCCGGCTTGCCCCCGATGTCGATGCCCCGC 256581 37 81.1 0 ............T....A........C..T..T.CT. | C [256607] ========== ====== ====== ====== ===================================== ====================================== ================== 17 37 98.7 37 GTGGCGCCAGCCCTCCGGGGCTGGCGAGGATCGCAAC # Left flank : TCCGCTGTGACACGTGCGTGTTCCGAGAAGCCGTGTCTGTCGCCATTGATGTTGACGCTGTGTGCGTACACCTCTCACCCCAGTCGGTTACGTCACTCACCGAAATCGATCAGGAACGTATCGCGAACAACCGACAGCGATCACCCGGCCCTGCTTCGGGGGTGGGGAAGGACCGCAAGGCCGCTTGGGAACCCCAAGCGTGTCCCGGTGCCCCGGGAGGTTCTCAAGTGGATGCCCGGATCTGGTGGAAGAGCGAGAGATTGGAGGCTGAGACGGCCGAGAGCGTCGTGGGGATGTGCCAGCATTGACCGCGGCGCGGTGAGCAGAGAAGGGATGAGTTCGGGACGATCTCGGGTGAACGGAAGCGACGACTGCGCTGGCTTCGGAAGGGGAAGCGTGTGTCGACATGCCGTGAGGTTCCGAAGCGTTTGTTCGGCGTGTCGGTCACAGGGCTGTCACAACCGGGGGACGGCTATCCTGAGAACCCCTGCTCAATCGCC # Right flank : CGGGGGTTCACGGCGCCATGGTGACGAAGGTGTTCAGGTGTTGTCCGTCGGCGCCGTACACGTTGAGTTCGTAGTCGAGGATCTCGGATTCGTCGCGGCCGTCGTGGCGGACGGAGGCCGCCAGCAGGCGCTTGAGATGTTCTGGGCTGTCGGGGTCGGCTTCGGCGGTGAAGGTGCGGACGGTCGTACCGAGGCGACGGACTTCGAAGTGCAGCAGCCGCGGTCCTTCGGAAGCGGGCGCCGACTCCGCTCCGGGGGATTCCTCGTCCGGTGCTTCCTGCCGCTGCGGTTGTTCCCGGTCGTCCGCGGCTACGAGCTCACGGGCTCCGACCGCGACGGTCGTTGGCTTGCCGCGGGACGTTTCGGCCAACCCCCAGGTCTTGAGCAGTGTGACGGCTCTGCCGGCGGTGCCCACGGACACGTGGTGCTGGTCCGCGAGCTGCTTCGCGGTCGGCACCCGATCGCCGTCGACGAGCTCCCCGAGTCCGATCCGGTCACGG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCCAGCCCTCCGGGGCTGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-19.60,-17.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 52246-50871 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBYW010000004.1 Actinopolyspora biskrensis strain CECT 8576 Ga0372422_04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 52245 29 96.6 33 ............................A GCGGATATGCCCGCCTATCTACATCAGGCACCC 52183 29 100.0 32 ............................. CGGCATTCCTGCGCGTGGTCGCTGGCGTAGAC 52122 29 100.0 32 ............................. GCGGGCACACGGTGTGCCCCGGAGACTGGATC 52061 29 96.6 32 ............................A CTCCCTGAATTCGGATACGATGGTGGCGACAC 52000 29 100.0 32 ............................. AAGTCCGGAACACCGTCGGTACTGCTGACGAA 51939 29 100.0 33 ............................. TTGCTGTTCCAGCTCGTCCCGCTGCTCGCGGGC 51877 29 100.0 32 ............................. GCTTGGCCGACCCGCAGCCCGACAACACCGCG 51816 29 96.6 32 ............................C AGCGTGTGGTCCTGCTCGGAGCGCGATCCGGC 51755 29 96.6 32 ............................C AATGTGGTCCGTGTGAGCGCCTTTACCTATCC 51694 29 100.0 32 ............................. GACGTCCTCGCCGAGTGGGAAGACGCGCTCGA 51633 29 100.0 32 ............................. CCACTTTCGTACCGTTGGTAGGTAGCTCGTGT 51572 29 96.6 32 ............................C GCCGCCGGGACCGCGCGCGAGCCGAGCGGGAG 51511 29 96.6 32 ............................T ACGTCACGTCGGTTGAGCTGCCGATCGAGTTC 51450 29 100.0 32 ............................. GACGTCCTCGCCGAGTGGGAAGACGCGCTCGA 51389 29 100.0 32 ............................. CCTACCGGAATCGGGGCCAGCGGCACACACGC 51328 29 96.6 33 ............................T CTGTTCCTCGCCTCACCGGGAAGGCCTGCCAAG 51266 29 100.0 32 ............................. TATTCGAGCTCGATTCCGACCGTCCAGAGTTG 51205 29 96.6 32 ............................C TCGGCGGTTCGCACCGCGTCGGTGAACCCCGA 51144 29 96.6 32 ............................C AACGCGGTCGACTGGGTCGCCGGACTTCCGGG 51083 29 96.6 33 ..A.......................... ATCATGATGTCCCACGACTCGCGCACGTCCTCC 51021 29 82.8 32 ...........GCAA.............C GCCTCATCGATGATGTTGACGTCGCCGCTGAA 50960 29 86.2 32 ..A....T......G.A............ TCGTCATCGACACCGTAGAGCGCCCTGCGCAG 50899 28 86.2 0 .............A.-.....G......C | A [50881] ========== ====== ====== ====== ============================= ================================= ================== 23 29 96.6 32 GTGCTCCCCGCAGGCGCGGGGATGATCCG # Left flank : CTACAGCGAGAAGGACATTACCGACGTGGCAGCTAATACCGGCGCCAAGCCTCAGCGGAAAGCGTGAAATCCATGCAGCTCACCAGGCTGCCTTGCTTACAGTTTCCCCTGAGGTGATGCTTCTGTGATGCCTGGCCACAGGGGCAACTCATCCTTACTGTCTAGTACTCCACACCGATAGTTGTCACTTGTAATGGCTGGTCGCAGGCGTAAACTCCACCTCGCAGATAATGTCGTACAGCACCCGTTTCCATAGACCAGCGGGTCGGAGTACCAGCGCAACTCCACAGGGACTGTCCTGACGCTCAGCTTGACCAACGAACCACTGACTACTCTCGACCGGAATATGGTTGTCCTCCGGTTCCGTGGAGGATGTAAGTGGTGTTAAGGAGCGGCTGATTATCGGTTGTGTGGTGTGGAGGTAGGTTTGGTCGGTGGTTGTTTGACACAAACTGAAGCTATTTTGCTGCTTCGGGCTGTGTAGTGCCTGGTCATCAAGT # Right flank : GCCGATTTCGACCAGTTCGCCCCATGCTGCGGTACTCCCCACGTATGCGGGGGTTTCTTCCCGCGAAGTCCGTATGGGAACGACGGTCATCGAGTGGACGTCAGGAAGGGGCGAGCGGTTATCGTCTTCGTGGCACTAGATGGATGCAAACTGGGGTGGTGGCTAGCTGATGCAAACTGAAGCTATTTTGCCGATAGCCGCTACATAATGCCTGGTCATCGAGAGGTGCTCCCCGCGCCTGCGGGGGTGATCCGTTCCTCGGTGGGGGTGGCCAGCCATTGCCGCGGTGCTCCCCGCGCCTGCGGGGGTGATCCGGAGGCGCGTCGCCGCGGCTTCATCACGAACGAGTGCTCCCCGCGCCTGCGGGGGTGATCCGGCGACGTCGTCGTGGACACCCGAGCGGGTGGTGTGCTCCCCGCGCCTGCGGGGGTGATCCGTCGGCTTCGATGCTGAATCCGTCCAGCACGCCGTACTCCCCGCGCCTGCGGGGGTGATCCCAC # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCAGGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCAGGCGCGGGGCTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 70373-71457 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBYW010000004.1 Actinopolyspora biskrensis strain CECT 8576 Ga0372422_04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================================================= ================== 70373 29 86.2 31 ...........GCAG.............. ACGACTGGATCAGTTCGGTGCAGGAACAAAG G [70399] 70434 29 82.8 32 ...........GCAG.............C ACCGAGACCGTCGGCGAGGACGACGACGCGGC 70495 29 86.2 32 ...........GCAG.............. CGGTGTACGTAGATGGGCAGACGAGCTGGACC 70556 29 72.4 173 ...........GCAG......C.CT..G. ATGGTCTTGTACGGACCTTGGTGGTTGCCGAGTTTCTGTGCTCCGGGGGGAGTTCGAGAAGGATCGAGTGACTGCCGTCTTTGCGGCGTTGGACGGATGTAGGTTGGGGTGGTGGCTGATGCAAATTGAAGCTGTTTTGCTGTTTCGGGCTGTATAGTTCCTGGTTATCAAGT 70758 29 100.0 32 ............................. TAATATGCCTCGCGTGGCAACAGAGGACGATT 70819 29 100.0 32 ............................. ACTCCACGGGCAGCCACCCGGACGACGCCCGC 70880 29 100.0 32 ............................. TGGAAGTACAAGACCCGAGTTGCTTACTCCGC 70941 29 96.6 32 ............................C CCAATTCGCGGTCGGGTCCTGAGTGAAAATCG 71002 29 96.6 32 ............................C GTCCCTACGACCTTCGCCATGCCTGCGTGTCG 71063 29 100.0 32 ............................. GGCTCCGGATGCGGGCCGCCGAGCGCAGCTGG 71124 29 100.0 32 ............................. GCGAAAGAGGCCGCGGCGATGCCGGTCACGCT 71185 29 100.0 32 ............................. CTGTACTGGGCGGCCAACAACGCGGTCGCGTT 71246 29 100.0 32 ............................. CCCTACGTCACGGTCACATCATCGGACTTGTT 71307 29 100.0 32 ............................. ATCCATTGCTGAGTAGAAGTCCGCAGACTGCC 71368 29 96.6 32 ............................A TTGTCGAACCACCCGACCGATGGGGCAATCGA 71429 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ============================================================================================================================================================================= ================== 16 29 94.6 41 GTGCTCCCCGCAGGTGCGGGGATGATCCG # Left flank : GCCGAGCAGTCCGGTCGTCCGGTGCGTGTGTACCCCAGGATGCCCAGCGAGCAGGACCCGCTGCCGAAGGCCGATGCCGTGCTGGTCGCGCCGGTGACGTTCAACAGCCTCACCAAGATCGCCACCGGTGTCAGTGACACCTTGGCGGTCAGCCTGGTCAACGAGCTGCTGGCCGGCGAGGTGCCCATCACCCTGGCGCCCTGCGTGAAGCCCGTGCTGCGCCGGCACCCCGCTTACCCGGCCAATATCCGGCTGCTGACCGATGCCGGCGTGCGCCTGCTCGACCCGGACAGCCTCACCAGCCGCGGCACCGACGGCCTGGCCACCTTCGACTGGAACACGGCAGTCACCGAGTTCCTGCGCGCCGAATGAGTTCGAGAAGGATCGAGTGGTTGTCGTTTTTGCGGTGTGGGGTGGATGTAAGTTGGCTCGGTGGATGTTTGAAGCAAACTGAAGCTGTTTTGCTGCTTCGGGCTGTATAGTTCCTGGTCATCAAGTAG # Right flank : CTCCACGTCCATCAGCAGCCGGTCGCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTCGACGTGCTCCCCGCAGGTGCGGGGATGATCCGGTCCGGCTCAGCAACCTCGCCGGGGAGTGGGGGTGCTCCCCGCAGGTGCGGGGATGATCCCTCCACGTCCATCAGCAGCCGGTCGCCCTCGACGTGCTCCCCGCAGGTGCGGGGATGATCCGGTCCGGCTCAGCAACCTCGCCGGGGAGTGGGGGTGCTCCCCGCAGGTGCGGGGATGATCCCGCGGCCCACTGCTCGTGCCCCCCGTTCAACATGTGCTCCCCGCAGGTGCGGGGATGATCCGAGCCGGTGGGTCGAAGTTCCCTCGGCCGCTGAGTGCTCCCCGCAGGTGCGGGGATGATCCCGCGCGCCGGTAGGCCGCATCGGGGTCGGCTTCG # Questionable array : NO Score: 4.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:-0.88, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCAGGTGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCAGGCGCGGGGCTGATCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 71590-72106 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBYW010000004.1 Actinopolyspora biskrensis strain CECT 8576 Ga0372422_04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 71590 29 100.0 32 ............................. GTCCGGCTCAGCAACCTCGCCGGGGAGTGGGG 71651 29 96.6 32 ............................C TCCACGTCCATCAGCAGCCGGTCGCCCTCGAC 71712 29 100.0 32 ............................. GTCCGGCTCAGCAACCTCGCCGGGGAGTGGGG 71773 29 96.6 32 ............................C GCGGCCCACTGCTCGTGCCCCCCGTTCAACAT 71834 29 100.0 32 ............................. AGCCGGTGGGTCGAAGTTCCCTCGGCCGCTGA 71895 29 96.6 32 ............................C GCGCGCCGGTAGGCCGCATCGGGGTCGGCTTC 71956 29 100.0 32 ............................. TCTCAGAGCACGGGCAGGAGTGAGACGAGTTC 72017 29 96.6 32 ............................T TCCGGCGACTTTGAGCCTGAATCCAGCGCGGA 72078 29 89.7 0 ................T........G..A | ========== ====== ====== ====== ============================= ================================ ================== 9 29 97.3 32 GTGCTCCCCGCAGGTGCGGGGATGATCCG # Left flank : CGGGCTCCGGATGCGGGCCGCCGAGCGCAGCTGGGTGCTCCCCGCAGGTGCGGGGATGATCCGGCGAAAGAGGCCGCGGCGATGCCGGTCACGCTGTGCTCCCCGCAGGTGCGGGGATGATCCGCTGTACTGGGCGGCCAACAACGCGGTCGCGTTGTGCTCCCCGCAGGTGCGGGGATGATCCGCCCTACGTCACGGTCACATCATCGGACTTGTTGTGCTCCCCGCAGGTGCGGGGATGATCCGATCCATTGCTGAGTAGAAGTCCGCAGACTGCCGTGCTCCCCGCAGGTGCGGGGATGATCCATTGTCGAACCACCCGACCGATGGGGCAATCGAGTGCTCCCCGCAGGTGCGGGGATGATCCCTCCACGTCCATCAGCAGCCGGTCGCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTCGAC # Right flank : ATCTCGGTATCACCGCGCAGGTACGCCTGCCGTGCTCCCCGCTTGTGCAGGGGCGCCCCGTGCGTCTGAGCTCCAGTTCGGTGTCCTCGGCGATGCGTTGTGAGCGATGATGCGCATCGATTTTTGTGACTTGCAACACGAATCTCTCTTTGATTGGGCGAACGAGTCCGTGTCTGTCAGTGGTCCGTGCTTGACTCCCCGTGAATGGCGAAGGCCTGTCTAAGGGGGAGCTCGTGATCGGATGGGGTAGTTGGAAGAGCTGGAACTGAGCAGGTCGGCTCGTGCGGTGTGGGCGAAGTCGACCAATGGAGAAGGGGACTGGCTGCCGCTGTGGCGGCACATGGACGATGCGGCCGATGTCGCGGCCTGGCTGTTCGACCACTGGTTGGCGTCCAGTGTGGTCCGGTTGCTGGCGGCGGAGTTCGGTGGTGATGTGGTCGCCGCTCGTTGCGCGGTGATGTTTCTGGCCGGTGCGCACGATGTCGGCAAGGCGACACCGG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCAGGTGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCAGGCGCGGGGCTGATCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 81479-82605 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBYW010000004.1 Actinopolyspora biskrensis strain CECT 8576 Ga0372422_04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 81479 29 100.0 32 ............................. ATGTGCACCGGTCCGACGTGCTTCCGCAGCGG 81540 29 96.6 32 ............................C ATGCCGTGCTGAAGTAGTTCGGCGTCGATGCG 81601 29 96.6 32 ............................T TCACAATGGGTCATAGACCATTGTCTCCGGTA 81662 29 100.0 32 ............................. CTCCGAGGTACGCTCGACATGCCACCCCGGTA 81723 29 100.0 32 ............................. GACCGGCTGGACAAGCTGGCGGATGAGATCGG 81784 29 96.6 32 ............................C GGGGCCACCGTGGACCGGCACGTGCTCGACAA 81845 29 96.6 32 ............................T GTGTACTCTATCCTGCTTCGGGCTTCGCCTGT 81906 29 100.0 32 ............................. CCTCCGGATAGGTCCCTGTAGCGCTTTGCGCC 81967 29 100.0 32 ............................. CTGACGAAGTTCGAGCGTGGGGACCTGACTGC 82028 29 96.6 32 ............................C AATAGGCGGTGTGGCAGGCGTTGTACTCCTCC 82089 29 96.6 32 ............................T CGATCCTTGACCTTCGAGACTCCAAGCACTCC 82150 29 100.0 32 ............................. TTCGGCCGGGTCGATGCCGAGCATGTCGAGCA 82211 29 96.6 32 ............................C AGCTACTCCGGGGCCGACTGTTGCCGAGTGGT 82272 29 100.0 33 ............................. CAGCTTCCCCGCGATCTCCATCACCCCGTGGTG 82334 29 96.6 32 ............................T TCCCCCGAATTCAGCTGTCGCTGTGTCGCCCG 82395 29 100.0 32 ............................. GCAGCGCGGATCAAGCGCCAGAAGGATCAGGC 82456 29 96.6 32 ............................C GCGAGCGGGACGAACTGAGGCAACAGCTCGAC 82517 28 89.7 32 ............G.-...........T.. ACTTCATCGACCTGGTAAAAGTCGTCATCAGG A [82528] 82578 28 82.8 0 .......T..TAG........-....... | ========== ====== ====== ====== ============================= ================================= ================== 19 29 96.9 32 GTGCTCCCCGCGCCTGCGGGGATGATCCG # Left flank : TCATAACCGTCGTCGTACTGACCGCTGTACCTCCCGGTTTGCGGGGCCATCTGACCCGGTGGCTGCTGGAGATCAGCCCCGGGGTGTTCGTCGGGCACGTCTCGGCACGCGTCCGCGAGGAGCTGTGGGAACGCATCCTCGAGTTCGCGGCGGACGGTCGGGCACTCATGGTCTACTCGACCCAGGGCGAGCAGCGCTTGTCCTTCAAGGTGCACGGGCACGATTGGACTCCGGTCGATCACGACGGGCTCATGCTGATGCGTCGGCAAACCGTCCCGGACTACGTACAGGCCGACCACGAGGTCGTGGACGGGGCCGTGGCACAGCAGAAGAACCCCTCCCGCTCCGAGCCTTCGTCGACGGTCAACTCCGAGACCGTGTGGAAGCGCCGGGAGAAACGCAGGAAGTTCAAAAGGAAGTAGCTTGGAGAGCGATCGAACTGCCCGACAAAACTGAAGCTATTTTGCCGATAGCCGCTGCATAATGCCTGGTCATCAAGT # Right flank : GCCCGGTGAGCATCGCGTGAATAGTCTGATCTGTTAGTAGAGCAAGCTTGGACCGCAAGTACTTTCCTGCATAGCTAGTACTGGCCAAAGCCTTTTAGGTCTCACCCAACGAGGCGATGCAGTACCCCAGCAACGCTCAGCGTCACCAAAGACCAAGCTGTGAGCCACGCAAACACCGCAACAACCAACGCCCCAGAGTTGCCTAGCTCCTCGTGTAGCTTGAGCCAAGCTTCGATTGCAGTCACAGCACCTGCTAGGACCCCCACAGCCCCAGATGCTAGGAGGATCACGAGGAGGCGGGTCGAGACAAGGGGGCGCTCTGGCTCCGGTTCCTGCCCACTCTGCGCTGTCTCTATACTAGGCACCAGCTTCCCTTTCACTATGGTCTGATTTTGGGAAGAAGGGCGGCTCCCGTGGCAGCGGGAGCCGCCCGCTTTCTGCGGTCGGCACGCCGCCCTTCTCGAACCACTGGAAGCTCTGTCCAGCCTCCAGCTATTCAT # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCTGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //