Array 1 142206-143193 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBRY01000063.1 Pseudomonas cichorii strain ICMP 6917 PchICMP6917_Contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 142206 28 100.0 32 ............................ TGGCTGTAGTTGGCCGGCAGCGGCAGGATCAG 142266 28 100.0 32 ............................ AGCCCGACAGCAGCTCCCGTCGCGAGAAGACC 142326 28 100.0 32 ............................ ACGCTAATGGCGTTCTCGGAGTCGCGCTGGTT 142386 28 100.0 32 ............................ TACAACCCCTCGCAGATCCTGAACGCGGGCGA 142446 28 100.0 32 ............................ AGTGGCGGGTGGGAGCTGGAATTTGTCGAAAG 142506 28 100.0 32 ............................ AAGCGTAGTCATCACCTGGGTATGGCGTTAGC 142566 28 100.0 32 ............................ CGAAAAAAGAATGGGCCGGCGAGCCGCTGGTA 142626 28 100.0 32 ............................ ATTGACACCAACATCATTCTGCAAAGCCTTGG 142686 28 100.0 32 ............................ TAATTACGGCGTCCGGCTCGTATATCCACATG 142746 28 100.0 32 ............................ CGCTCGTTCGACACGTCTGCCAGCTGTTGGCG 142806 28 100.0 32 ............................ TGGATGGCTTTCAATGTCAGCAGACACTTGCA 142866 28 100.0 32 ............................ TTCAACACCGACGGCAGCGCCCGCATAGGCTC 142926 28 100.0 32 ............................ GGATAGCTGCCTGTTGCGCCGTACGCATCGTA 142986 28 100.0 32 ............................ AGCGCTCGCCGCCATGCAAGGCAATGCTCTGG 143046 28 100.0 32 ............................ AAGAGCAGGCATCAGCTATGCAGCTCTGCGTC 143106 28 96.4 32 .............C.............. AGGTCAACGACTTGGTCATCAGAGACCTGGTG 143166 28 75.0 0 ............A.......TC..ACTC | ========== ====== ====== ====== ============================ ================================ ================== 17 28 98.3 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : AGGGATGCAGGCTCTTTTTTGAGTCTCCCTCGGGCACCACATAGCAAGACACTCAAGCGGTTGCAGAGCTTGGGGTGAAAGAAACCGGCCAGTTGAGCCGGTTTTTTTGTGTCTGGGTTTTGGTGATTGCCGGCCTGTAGGAGCGAGCTTGCCCGCGACGACTGTCGCCCTGCCAATGAAAATGCATTGCCTGCACGAACGTCGCGGGCAAGCGCACTCCTCCTTCAGTCGCAGCTACCCGAGTAGAAGCGAATTCATTCGCGAAGACGGCATTCCAGACAATACATGTCCTTTGAATGTACCGGCCTACCGCGAATGAATTCGCATACAGCTCCGGCACCAAACCACGACTTCAAACACCCTCTTTTTGACCCTCTTTTTTTCAGACTCCGTCGCCCCTTTAAAATCAACAAGTTACGGAACCCTCAAAAAAGAGGGTAAAACGGCCCCAAGCAGGTGGTTTATCTTTAAAAACGGAGAGTTATAAGGCAAGGTGTCTA # Right flank : CCACTTCATAACCGTCAAATCCTACGTCCCCACGCACTCCCGCCCTACAACCACCGACTCCCCATTACCTCCCCCAAACTGAATCCCCTCATTTAACCAACCCGGCCCCCAAGCTACGCTTCCTGCCGTTCGCTGCCAGTTCAGCGACCGGGTTTGGCGACCCGATCTAAAGATAAATTCCCCCATCGCGAAGCAGTCGATTTATTCTTCTGTCCCTGCGTTATGGCGGTTGTGTGCGGGAGGCCTTCGGGTCTGCCGGGTTTATCTTTTTACCGGTTCGCCAACCCTCACACAGCTGCCTCCATTTGTTTGGCGACAATCCGTGGCAGCTCTTTTTCAGCGACCATAAAAAGTGTGCCTCTATGCAAAAGCTTCTATCCGATTCCCCATGTACATCCTCCTTCCAAGCCACCCTCTTCCTGCGCCACAGCCGCATGCTCCGCGCCATATTCACTGAATCCCAAGCCTGGTTCTGTCTCTCAGACCTTGCCCGCCTGATG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 175344-174355 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBRY01000063.1 Pseudomonas cichorii strain ICMP 6917 PchICMP6917_Contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 175343 28 100.0 32 ............................ TTGACCGGCGGCAACGGCTCGACCTTGACCGG 175283 28 100.0 32 ............................ TGCTCAGGGCGCTCAATTGGGTTGAAGCCGCC 175223 28 100.0 32 ............................ TCCATGCAGGCGCGCATCGGGTAGCCCATGTC 175163 28 100.0 32 ............................ AGTTACCTTGCCGTACTGCTTGACCTCATTGA 175103 28 100.0 32 ............................ AGCACCTTGCGCAAATCCGCAAGCCCTGCGCC 175043 28 100.0 32 ............................ ATGACGGTGCGCACGTCCTCATCGTCATAACT 174983 28 100.0 32 ............................ AGTCGATGAGCAGCGAGAGTTAAATATTCCAT 174923 28 100.0 32 ............................ TGTGGCTGCCGCAGCAGACCCTGTTATCGCAC 174863 28 100.0 32 ............................ GGCCAGCGTGCCCATGGCAATTTCAGGCTTTC 174803 28 100.0 32 ............................ CGAACATCTCCATGCCGCCTCCCGAGGCATTC 174743 28 100.0 33 ............................ TGGACGGCCGGGTAAGCGCTGGAGCCCTGGCGG 174682 28 100.0 32 ............................ AGACACAGACGAGCAGGGGGCGGTATGAGCAT 174622 28 100.0 32 ............................ ACTATATGGGCTGATGGATGATGTCAGAACAG 174562 28 100.0 32 ............................ CCCCTGAGTAGGCCGCCCGGCAAAGGGTATGG 174502 28 100.0 32 ............................ TGAAAAGCGGATCTCCGGTTGTTGGAGATGGC 174442 28 100.0 32 ............................ GACGCCATTTCGTCGATTCCTGCGCAGAACGG 174382 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 17 28 100.0 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : CGAAGGCATAAGGGTCTTTCATTATTATTCTTGTCCCCATCAGTCAAGGTGGTCAGAGCATCAACCGCTTAAATGATGGGTTTCAGGGTAGTAGAGAGTGGGGGTGTTTGCTGCTGAGAGAGCCGACTGATTGGGTAGGATTTATCCGCGAGACGACATTTCAGACGATGCATTTTTGAGAACTGAGTGATTCATCCCACGCATACACAACTTTGTGGGAGGGGCCTTGGCCGCGACAGCTTCACACGGGATATGTCAGGAAATGGAGCTTTTCCGGGCTGTCATGTCGCTGGGGACGACATCAGAAAGCACGACGATGTCCCACAGCTTGCGAACATCTACCCAGTGGTGAGAAATGAACCCTTTCTTGACCCTCTTTTTTCGCCTCAGATTCGTCCTTTAAAAATCAATGATTTACAAAGCTAGATGAAAAAAGGGGTAAAACGGCTGCTGAGGCATATTTTTCTTTGAAAACGGAGAGTTATCGAGCAGAGTGTCTA # Right flank : ATGACCTGTGGAAACGAGCATCGCCCTTGGCGCTCACTGCCGCACAGGCGGCCCCCACCCAAAGCCCTCGTAATAAACACATTACAAGGGCTTCAGCCCGCATCAAAACCAGGGAACCGTAGCCGTAGCACTTAACCCATAGCTATTGAAGGCCCCTTGCTGGGCGCTGCTCTGTATCGGCCCATGCTGAATGAACAACAGGAATGTCTGGCCGTTGGTGCGACTGCGCAGTTGGGTGAAGGGCAGGTTGCAGCGTTTTGCGGCGCTGTCGGGGATGCGTTCGCGGGCCTGCTCTTCGGTGAGGCCATGGCGTTTGATCAGGCGCCGCCTTGTGCGTTCCGGGTTGCTGTCCACTTGCACGCGGCTGACGCGACGATGCTGCGCGTCAGTGGGCACCACGCTCAGTTCGCCTACCCGCACATGGTCACGCATGCCCGTCAGCCAGGTCAGTGCCATCAAGGCATCCAGCGCTTGCGCACTGCCATGCAGGCGCAGGCAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //