Array 1 12425-10746 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRMT01000032.1 Actinomyces urogenitalis S6-C4 contig35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 12424 28 100.0 33 ............................ GGAAAGCAGGGCCCCCGAGGGCCAATCGGCCCA 12363 28 100.0 33 ............................ CAGTGATAGAAAAGTGAGGGAGATTCTAGAACA 12302 28 100.0 33 ............................ CAGGAAGAAAGGCTGTTCTCATGACAACAACAA 12241 28 100.0 33 ............................ CTCCTCTCACGGTTACCGCTACTGTGACCTACA 12180 28 100.0 33 ............................ CTGGCCCCTAGGAAGTGGTGAGGGGGTGAGGGT 12119 28 100.0 33 ............................ GTAGACGCCGCTAGGAAGGTCGATGAGGTGCTT 12058 28 100.0 34 ............................ CTACCTATTCCGTCCATCTAGAGTTTTTTAGTTG 11996 28 100.0 34 ............................ GCCCGTCCGCAAACTTGTCGGTGAGTGGCTCGTC 11934 28 100.0 33 ............................ GGTCGGACGGCGCCCACTCCTGCTTGCCTGTCC 11873 28 100.0 33 ............................ CGCGATCAAGGGCATCGTCACCGGCGGTATCAG 11812 28 100.0 33 ............................ CCATCTGGGCCGCACCCCTGGTGCCGAACACGG 11751 28 100.0 33 ............................ CCTGACCAACCGGGCGAACCAGCGCGAGGTCGC 11690 28 100.0 33 ............................ CGGGCAAGAAACACTGACCAGCGAGCGGTGTAC 11629 28 100.0 33 ............................ GACGAGAGACCGAGAGACCGAGCGAGCGGAGCG 11568 28 100.0 34 ............................ GAGCCACCGCTCCACCGTCACCGGTGTCCTATCG 11506 28 100.0 34 ............................ CTAGGGGGTGAAACATTGCTTGCGGGTTATCAAG 11444 28 100.0 33 ............................ CCTGCTCAAGTTCCCTACTCGCAGCCTCCTCAG 11383 28 100.0 33 ............................ CCGCATCGGTACACCACCGAGCGGGGCGCAGCT 11322 28 100.0 33 ............................ TCAGCCAGCAGGTCAGCCCACAGCGCCGCCCAC 11261 28 100.0 34 ............................ CTGTCCGTTCATGCGCAGCTCGACGTCCGCCATG 11199 28 100.0 33 ............................ CGCCGGCCATATCTTTAAGGCCTCTCGACCAGA 11138 28 100.0 34 ............................ TGCGGATTGGCGAGGCGATTGCCCTCAACGTCGA 11076 28 100.0 33 ............................ CGGGCTCAGGTCCGTGCTCAGTGGGGCCTGGAA 11015 28 100.0 33 ............................ GTTCGCATGGCCCACGGACTGGTGCTACGGCAC 10954 28 100.0 34 ............................ GCGCTCGTTGAGGACGGTCATGGCCTGGGTGGCA 10892 28 100.0 33 ............................ CGTCTGGGAGCCGGGGGCGGCCGGGGCTGAGAT 10831 28 82.1 28 ......................GG.CAA TGACCTTGGTGTGGGACCAGATCCGCAG A [10805] 10774 28 71.4 0 C........GT.CC.AC..........C | T [10748] ========== ====== ====== ====== ============================ ================================== ================== 28 28 98.3 33 GTCGTCCCCACGTGCGTGGGGGTTGAGG # Left flank : TGCCGGTGTTTGGAGTCGTGGGGCGTCGGTCGGTGCCGGTCCTTCGTGGCGTTTTGGTACGGACGGACGGGTTGCCTCCGGCGGTGACGGTTGCGGTCAGGAGCGGGGTGATCCAGGCGCGGGCGGTGGAACCGCGTGCCATGGCCTCGCTATCCAGAGTTGTGCGTGAGGCGACGACGGCCGCGACTGAATGGACGACGGTCGTCCCGGTTGCTGGGTCCGATCCTGACCTGGAGCTCCGGCTGACTGCGCTTGCTGAGGAGCTTGGTGCCCATGTGCTCTGGGCGGGGACGCACCGCCAGGCGGGCGGATGTGTGGGGGCTGACGTGCAGGAGCCGACGGCGCTGCGGCACGTATCGATGGAACTTGATCGTCCTGTCTCGGGTCCTGTGGTGCTGGAGGGGGTGTGGATGGTACCGGTGAGTGCGTCTAGGTTGGCAGTGAATGCGAAACGACCTCGCAACAAGTAGATACCGTTGGAATCATGCCGAATCTCAAGT # Right flank : TATGTAGCCGGCAGTTACGACGTATGAGATCGGCGCGGCCCGTGCAAGCGGGCGATTCCTCGGTTTTCAGAGTTCTCGGGATTCACGCGCGTGGCCCATCTGGTTGATGGCGCGTGCCTGTCACTGCCGCGGTCCGCCGGGCAAGAAGCCGTCTTCTCGCCCGGCGGACCGTGCCGTGAGACCGCTTTGCCCATCGGCTGAGATCTGGGCGAAGATGGAGTATGCGCGTGCATAACTTCTCAGCAGGACCCGCCCAGCTTCCCCTCCCCGTTCTTGAGCAGGCTTCCGCCGAGCTCACCAACTGGCGAGGTTCTGGAATGAGCGTCCTCGAGGTCTCTCACCGTGGCAAGGACTTCACCGAGTGCGCCGCGGACGCCGAGGCCACGATCCGCCGCCTGGCCGGCGTCTCGGACGACTACGCCGTGCTCTTCCTTGCCGGCGGTGCCACCGGCCAGTTCTCCGCCATCCCCGGCAACCTCACCCAGCGTGGGGACACGATC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCACGTGCGTGGGGGTTGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 62289-65685 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRMT01000061.1 Actinomyces urogenitalis S6-C4 contig65, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================== ================== 62289 28 100.0 33 ............................ GCTTACCTAAGCAACCCGAAGAAGGAGGGGGAC 62350 28 100.0 33 ............................ GGAGCCTCAGTCATGCCCCTGACTCCCGTCCCC 62411 28 100.0 33 ............................ GGCCGGGCACGCCGCCGAGACCGCCTCAGACGA 62472 28 100.0 33 ............................ CCAACCGAGCCCCGCGCCACTGTGGCCGGGGCT 62533 28 100.0 33 ............................ GGTTCCCCCGCGCGGATCGCTCAAGCTCCCGCT 62594 28 100.0 33 ............................ CCGCGGCGCCCACGTGACCGGCTGGGGTGATGC 62655 28 100.0 33 ............................ GTCGATGCGGTCGCGCACGTCGGCCAGCGGCGC 62716 28 100.0 34 ............................ CGAACCTTGGGCTCAACTCATCGACTGTGGTCAC 62778 28 100.0 33 ............................ GTGCAGGCATGAGAAAAACAGGGGCGCCGCAAT 62839 28 100.0 33 ............................ GGCGGCAAGCAGCGCACTGTCCCCCTCAGCGAT 62900 28 100.0 42 ............................ CCGCCATCATGGTGCGTCGTAGCCTGTCGGGCTCGACGACGA 62970 28 100.0 33 ............................ CCCCTGCCCTGTCTGACCTAGTGGACACCTGCG 63031 28 100.0 33 ............................ GATCGGGAAATGCTGGCCCACCTCGGTCCAGAA 63092 28 100.0 34 ............................ CAAGCGCCTTACCCATCCCGACTACCTGCACAAG 63154 28 100.0 33 ............................ GACATCGATGGAGCGCTTGTTCGCGCGGTAGAT 63215 28 100.0 33 ............................ CAGAGCCACAGCCACCCACAACAAACCGTAAAC 63276 28 100.0 33 ............................ CGAGGGACGCCTGTGCCTGTTCGAGCCGACCGG 63337 28 100.0 33 ............................ GGACCTCGGCCCGAAGACCTGCCAACTCGTCCG 63398 28 100.0 33 ............................ CCTCTGCTCCATCACATGCTCCTTGTCGTGTGT 63459 28 100.0 33 ............................ GGCCTGGGCTAGGCCGATCGTGCTGTAGATCGA 63520 28 100.0 33 ............................ CTGCCCCATGGTCAGGCCCACGATGTCGGTGTC 63581 28 100.0 33 ............................ GGCGCCGTAGTAGCGTGGTGCGAGCGATGCCAG 63642 28 100.0 33 ............................ TGAGGGGAGACGGGCCCCCGCCCAAGCCGCGTG 63703 28 100.0 33 ............................ CACCGTCAAGAAGATGCAGGCCGCCCTCAACCA 63764 28 100.0 33 ............................ CGCTGAAGTTGATGACCTCTGGAGGGTAGACGT 63825 28 100.0 33 ............................ GAAACACTGACCAGCGGGCGGTGTACAGGGCGA 63886 28 100.0 33 ............................ CTGCTCGACACCGACGATGCACAGGACGGGGCA 63947 28 100.0 33 ............................ CGAGGCTGGAAGCAGGCCGACCTTGCGGAGGCG 64008 28 100.0 33 ............................ GAGGATCCCGGTTTCGGGCTACTAAGTGACCGC 64069 28 100.0 33 ............................ TCGAGGAGCTCGAACGGCGTACGTGATCGCTCG 64130 28 100.0 33 ............................ GCCCACGCGACCAGGTAATCGCCCTGCGCCCCT 64191 28 100.0 33 ............................ CTCGTCGATGCCGGCGTCGCCCGCCTCGATGGC 64252 28 100.0 33 ............................ GAGCGACACCATGACCGAGGGGATTGCCACAGC 64313 28 100.0 33 ............................ GTTAGAGGCTCAGGATAACTCTGGAAAGACTCA 64374 28 100.0 33 ............................ CTGGCATGGAGCAATCAGCCACTCTGGTGAAGC 64435 28 100.0 33 ............................ CGCCGTCATGGCCGCAAACCCCATCATTCTGAT 64496 28 100.0 33 ............................ CTTTGTCGCTATCGCAGGACAGGGAAGGTGACA 64557 28 100.0 34 ............................ CAGGCGGCCGTCGTTGCGGACGCAGCGTGCTCGC 64619 28 100.0 33 ............................ TGCCATTCTCAAGGGCGAGGTAGAGGACTAGAA 64680 28 100.0 33 ............................ GGCGCGGGAGAGGTTGACGACGTTGTCGTCCTG 64741 28 100.0 33 ............................ GTGAGGCTTGTTGGCGGCGGCGGTCTTGTTGCC 64802 28 100.0 33 ............................ CTACACTCTCCGCCCAACAGTATTCATCGCTAG 64863 28 100.0 33 ............................ CCCTGACACACAACCGGGGGAGAGGGGACAAAA 64924 28 100.0 34 ............................ CCAGGGTGCGGCCAACCTCGAACACCTGGGTGAA 64986 28 100.0 33 ............................ GACTCGGTACTGAGTTGCCGAAGGCCGGTCAGG 65047 28 100.0 33 ............................ GGACCCGCCTACCTTGGTGAATCCGAGCTCGGC 65108 28 100.0 34 ............................ GTTTCGCAACCGCCTCGGTCCGGCTGTTACCCCA 65170 28 100.0 33 ............................ CGGACCTCCCAGATCGCGCCCGTGGGCTTGCCC 65231 28 100.0 33 ............................ GCCGTGACCAATCATCTCGCCAATGGCGGCGCA 65292 28 100.0 33 ............................ CCGTTAGGTTCAGACATCCCCTGTTCCCCTGTT 65353 28 100.0 33 ............................ GTCCGGCATGGCGGACGTCGAGCTGCGCATGAA 65414 28 100.0 33 ............................ CTGGCTACTAAGTGACCGCGCACGTCAGTTGCT 65475 28 100.0 33 ............................ CACCGCGCTGGCGAGGGGCTCTAGGGCCTCCAT 65536 28 100.0 33 ............................ CTCTTCCTCGTCGATGTCGTCCAGGAGGGTGAG 65597 28 100.0 33 ............................ CGGCAAGCGCCGCCGCCGGTGGGTGACCGCAAA 65658 28 85.7 0 ...................A....C.AA | ========== ====== ====== ====== ============================ ========================================== ================== 56 28 99.7 33 GTCGACCCCGCGTGAGCGGGGATGAGCC # Left flank : AACGGCAGTCCGTCGCAGGTGGAGCCAATTATGCGATCGGGATGGATGCATCGTGGTCGTCCTGATTCTCTCGGCCGCTCCAGCCTCCCTTCGCGGCGCCGTGACCAGATGGCTCCTGGAGGTCTCTCCAGGAGTATTCGTCGGGCGGTTGTCCGCGCGAGTGCGCGAGCACCTGTGGGAGATGGTCCAGACCTACATCGGGGACGGACGCGCTCTCCTGATCTGGTCGGTCCGTTCAGAACAGCGTTTCGCCGTAGCCTCGTTGGGGCATGAGCGTGAACCTATCGATATCGAGGGGTGCACGGTGATGCGTTCGTCCTATCGTGCCGCTGAGGGCTGGACAGCCATACCCGGAGCAGTCAAGCCGGCCAAGGAGTCCTGGTCGATCGCAGCACGACGACGGCGTTTTCGGAACTCCGCAGAACGCTCTCTAGGTCAGCAGTAAAGGAATACGGCCCACACGCTCACTGGCTTGCTTGAAGTTCCAGCGTTTTCCAAGG # Right flank : AGGAGCAAATGGGCGCCTGCGCCGAGAAACGCGACCTTCTCCCCCGACGTCTCGGGGATATTGCGTTGATCCCAACTGAGCCGCTCAGAGCAGACGGTGGCCGCGCAGCAATGCGCTGCGCGGCCACCGATCTCAGCCCCGTCGGAACACAGGCACCGTGAAGAAGTCGACCGCCGTGGTCACCATCTGCCCGCCGTGGAGCCTCTCACCGGTCCAGAAGTCCTCCCAATCACCCTGAGGAAGGTAGGTCTGCCACTCCTTGGCACCCGGCTGCGTGACAGGATGAACAAGCAGCTTGCTGCCGAGTTTGTACTGCAACGGGTGGTTCCAGATCTCCGGATCGTCCGCGTGGTCGAAGAACAGCGCCCGCATCAGCGGCGCTCCCCCAGCAACACAGTCCTGTGCCTCGCTGGCCAAATACGGCCGCAGCTGCTGACGGAGTGCCACAAACCGACGCGCTACCTCCACCACCTGTGGCTCACCTGCAGCCTCCGCCACGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCGTGAGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGACCCCGCGTGAGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //