Array 1 28979-30564 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPEC01000001.1 Riemerella anatipestifer strain RA1 Scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 28979 47 100.0 30 ............................................... TTATTTGCCGATTCTAATATAGAATTGATA 29056 47 100.0 30 ............................................... TGGTAAAACGATAGTAAAATTAAAATTCGG 29133 47 100.0 30 ............................................... CTACATCTGCTACACCTTTTATCGGGTTTA 29210 47 100.0 29 ............................................... ACTTACGCCTATTTTATTTTTAATTATTA 29286 47 100.0 30 ............................................... TTGACAGATGATATTTTGCTTAACACTAAA 29363 47 100.0 30 ............................................... TAATATTATGAACATTTGTAAAATCCTTAA 29440 47 100.0 30 ............................................... TCAACTATTCAGCAAATGTAGACGATACAG 29517 47 100.0 30 ............................................... AGCACGATAGAATTATGCTCATTGAGTTAA 29594 47 100.0 30 ............................................... GTATAAAAGACCAAGTGGAGATTACCCATA 29671 47 100.0 30 ............................................... AATTAGTTAATTCTCTGGGCGAGGTAGTTT 29748 47 100.0 30 ............................................... TTTCGGTTGCTATCCGAAACGATTCGGATC 29825 47 100.0 30 ............................................... GAGGTGTTGTCATATCTCAATCTCGTCTAT 29902 47 100.0 30 ............................................... TACTTCGTTTATTAGTTTTATTGCAATGTT 29979 47 100.0 30 ............................................... TAGATACATCTCTTTATCTTCGTGTAAAAT 30056 47 95.7 30 ........T...............G...................... GTCTTTGAGGTAAGGTTTTGTCAAATCCCA 30133 47 95.7 30 ........T...............G...................... TAATGGAGATTATAATATCCAGATACAAAC 30210 47 95.7 30 ........T...............G...................... TCTATCGAAGTGTTTAAAAACACTTGATTT 30287 47 95.7 30 ........T...............G...................... GATATAGTATCAGATGAACCGACAACGGAC 30364 47 95.7 30 ........T...............G...................... TGATTGACTCTATTTTCTCCTGTGCAGATA 30441 47 95.7 30 ........T...............G...................... TTATTAAAAGTTTTCCGATACTTCCTATGT 30518 47 93.6 0 ........................G..................T..T | ========== ====== ====== ====== =============================================== ============================== ================== 21 47 98.5 30 GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : TATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGCATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : GTTGCGAATTATCACAAAGATAGTGAAAATTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,4.87 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], // Array 1 12212-14275 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPEC01000003.1 Riemerella anatipestifer strain RA1 Scaffold_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =================================================================================== ================== 12212 35 88.6 30 ................G.A...TG........... ACTAGTAAAATAATAACGATATGAGAAATT 12278 35 82.9 80 ..................A..CT....T..A...A CTCCGCTGAAAATATAACGAAGCGTGAGCTAAAATGAGAGCAGTCCCAACACAACAGCAATGCAAGAAAGTATAGGAAAT 12394 35 80.0 80 .......G..........A..TT....T....G.A CTCCGCTGAAACAACAACAAAGTCGTGAGTAAAATGAGAGCAGTCCCAACTTCGAGGGCGATTAGCTGGACTTAATCGGC 12510 35 80.0 80 ..................A..TA..T.T....G.A CTCCGCTGAAAATATAACGAAGCGTGAGCTAAAATGAGAGCAGTCCCAACACAACAGCAATGCAAGAAAGTATAGGAAAT 12627 35 80.0 80 .......G..........A..TT....T....G.A CTCCGCTGAAACAACAACAAAGTCGTGAGTAAAATGAGAGCAGTCCCAACTTCGAGGGCGATTAGCTGGACTTAATCGGC 12743 35 80.0 80 ..................A..TA..T.T....G.A CTCCGCTGAAAATATAACGAAGCTGTGAGTAAAATGAGAGTAGTCCCAACAGACCTAGCAGATGACGGTAAACTAAACGG 12860 35 80.0 83 .......G..........A..TT....T....G.A CTCCGCTGAAAACTTACAACAAAGCTGTGAGCTAAACTGAGAGCAGTCCCAACTTTCTGTGTTTTGTGCTGTAGCCTTAATAT 12979 35 80.0 82 .....T............A..CT....T....G.A CTCCGCTGAAACAACAACAAAGCTTGTGAGCTAAACTGAGAGCAGTCCCAACACTCACAACAACTTAAAATACCAAAATAAA 13097 35 82.9 82 ..................A..TT....T....G.A CTCTGCTGAAAACGACAACAAAGTTGTGAGCTAAACTGAGAGCAGTCCCAACAATCAGACTTAGCAGATACTCGTGAAAAAA 13215 35 80.0 81 .......G..........A..TT....T....G.A CTCCGCTGAAAATACAACGAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACTTGGACGAATAATACGCCATTGTTTAACTC 13332 35 82.9 81 ..................A..CT....T....G.A CTCCGCTGAAACTACAACAAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACGGAAGGTAGAATTGAATGTTTTCATGATCT 13449 35 100.0 30 ................................... ATAGCAGTAGAACCATCAAACGCTGTGGCT 13515 35 100.0 30 ................................... CGGCAACAAAAGAAGGAGAAGAACAAAGCA 13581 35 100.0 30 ................................... AGCAACATATACGAAAATCCAGAAATCTTA 13647 35 100.0 30 ................................... TGTGCTTCCTACAACGAGTAGCGTTCCTTT 13713 35 100.0 30 ................................... TTAACTAAGTTACCTAGAAGTATAAATGAA 13779 35 97.1 30 ..................A................ TCTGCATCTACGAAGGTGATGAGGAAAAGG 13845 35 97.1 30 ..................A................ CAATAGGACCTATTATATTTACAACAACAG 13911 35 97.1 30 ..................A................ ATTTTGAAAATATAGAGGCGATAAGCCTTT 13977 35 97.1 30 ..................A................ ATTCTAAAAGGTACAGAGAATGAAGCTAAA 14043 35 94.3 30 ..................C........A....... TCAACCAATTTAATCTGCAACTCTGAAATG 14109 35 97.1 30 ..................C................ TGATAGGAATATTTCTTATTCTATTTTTTA 14175 35 91.4 30 ..................A.............C.A CTTAGGAGCAAATAAGCTGTATTTATTGGT 14240 35 71.4 0 ..................A..T.T...T.ATTGTT | C [14261] ========== ====== ====== ====== =================================== =================================================================================== ================== 24 35 89.2 52 GTTGTGAATACCCTTCAAGTGAGAGCAGTCCCAAC # Left flank : CATTAAAATAGATGGGGACAACCCTAAAAACGGTATTGTCTTTAAAAACTTAGACACTCAGCAAGAAGTGAAACTCTCAGCAGAGCATATTGTCCTTAATGAGCCGTCAAGGTTACTCATTCTCGTTCCTACAGATTTAGAAGCGGGTAACTATGAACTCAGCATCACCACGCAAAGCAGTAAAGGCACTACCTTACTGAAAGAACCCCGAACCGAAACACTAAGCACGCCTATTACTATTGTGTAGTGTGTTTTTGGCACTTCTAAATAAAGACCGCCCTTCCTTAATGCTAAGGAAGGGCGGTCGCTTTATAAGAGGAAGACACTTCACTGCCTAAGGCGAAGGCTCTTCTCTCGGTAAGGAGAAGAGCCTTCCCTCGTACGAGGGAACCGACTTCGCCTGTACTAAGGAAGTGAGGTATTTTCTGTAATAGAATAAATAGGAAGCAAAATCCCTGCTCTGTACCGTACAGAGCAGGGATTTTTTTATGCCCTTAGGT # Right flank : TATGATAGGGTATTGTCTTTTTTGGGTGCTTGTTTTATCTCGATGTTTCAAAGAACGCTTTTCTTTACAACGCTTTTAAATCGCGTTGTTCTATTTTTAGGCATTGCCTAATGCTTTGGCTCAACTTATGATGCAGCACCTTCATTCTGGTAGCCGCCTCTTCGTTTTTTAGTCGGAACTCCGCCTCGGTGCTGTTTTGCTCTGCAAGTAGGAGCTTATGAACGATACTACGGTACTCAAAAAACTTTTTGGTGACTTCCTCAGATAAGAAGAGCCCACAGCCCTCCCCATAAAATAGTTCTGGGAGCTCCCTTAGAAAGGCTTGGGCATTGGCTCGGTTAATATAATGAATTTTATCCTTTTGCCCTTTGGGAACTTCCCATTTTAAGAGGTTTTTGGGGTTGTCTTGGTCGGTCATATACGCCAGCAGACGGTACATCTGCTTATGGGCATGGAGTATATCCTCGTACTTTTGGCGTTCAATGTTGCCCTTAAGCTCT # Questionable array : NO Score: 3.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:0, 6:0.25, 7:-1.49, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATACCCTTCAAGTGAGAGCAGTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: F [matched GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [31-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //